RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 PBX1P40424 430 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 ADCYAP1R1P41586 468 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 LRRC63Q05C16 580 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 SPAG1Q07617 926 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 CRHR2Q13324 411 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 NEDD9Q14511 834 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 KNOP1Q1ED39 458 aaKnown RBP4.57□□□□□ -1.68
MCF2-201ENST00000338585 MTERF2Q49AM1 385 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 CELF3Q5SZQ8 465 aaKnown RBP4.57□□□□□ -1.68
MCF2-201ENST00000338585 FAM102BQ5T8I3 360 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 CEP135Q66GS9 1140 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 ARMCX5Q6P1M9 558 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 C17orf99Q6UX52 265 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 METTL7BQ6UX53 244 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 FAM178BQ8IXR5 827 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 BSNDQ8WZ55 320 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 MAML3Q96JK9 1138 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 SPATA33Q96N06 139 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 MPHOSPH6Q99547 160 aaKnown RBP4.57□□□□□ -1.68
MCF2-201ENST00000338585 GPR20Q99678 358 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 KIFC3Q9BVG8 833 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 KATNBL1Q9H079 304 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 XPNPEP1Q9NQW7 623 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 CDKN2AIPQ9NXV6 580 aaPredicted RBP4.57□□□□□ -1.68
MCF2-201ENST00000338585 KCND2Q9NZV8 630 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 MAFBQ9Y5Q3 323 aaPredicted RBP4.57□□□□□ -1.68
MCF2-201ENST00000338585 ARID2Q68CP9 1835 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 MYH9P35579 1960 aaKnown RBP4.57□□□□□ -1.68
MCF2-201ENST00000338585 MYH11P35749 1972 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 LOXHD1Q8IVV2 1947 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 TISP43B9A030 160 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 K7ENM7 598 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 PES1O00541 588 aaKnown RBP4.57□□□□□ -1.68
MCF2-201ENST00000338585 TGFB1I1O43294 461 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 AOC2O75106 756 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 OATP04181 439 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 EEF1GP26641 437 aaKnown RBP4.57□□□□□ -1.68
MCF2-201ENST00000338585 CTGFP29279 349 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 MTIF2P46199 727 aaKnown RBP4.57□□□□□ -1.68
MCF2-201ENST00000338585 CCL14Q16627 93 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 XKR3Q5GH77 459 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 MIIPQ5JXC2 388 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 PRAMEF19Q5SWL8 479 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 MAMDC4Q6UXC1 1216 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 ZNF720Q7Z2F6 126 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 LRRC8AQ8IWT6 810 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 DHX37Q8IY37 1157 aaKnown RBP4.57□□□□□ -1.68
MCF2-201ENST00000338585 ZNF507Q8TCN5 953 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 NOC3LQ8WTT2 800 aaKnown RBP4.57□□□□□ -1.68
MCF2-201ENST00000338585 SCFD2Q8WU76 684 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 SEPT1Q8WYJ6 367 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 CCDC102AQ96A19 550 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 TSG101Q99816 390 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 TUBGCP2Q9BSJ2 902 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 CYP26B1Q9NR63 512 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 FLRT1Q9NZU1 646 aa4.57□□□□□ -1.68
MCF2-201ENST00000338585 MAGEC2Q9UBF1 373 aaPredicted RBP4.57□□□□□ -1.68
MCF2-201ENST00000338585 SLC15A5A6NIM6 579 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 LGALS16A8MUM7 142 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 NOP56O00567 594 aaKnown RBP4.56□□□□□ -1.68
MCF2-201ENST00000338585 CLIC2O15247 247 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 SLC16A4O15374 487 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 ADCY6O43306 1168 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 PPP1R37O75864 691 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 TOMM70O94826 608 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 TPM3P06753 285 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 PLS3P13797 630 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 KLK7P49862 253 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 STAT5BP51692 787 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 ADKP55263 362 aaKnown RBP4.56□□□□□ -1.68
MCF2-201ENST00000338585 PEX3P56589 373 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 FKBP3Q00688 224 aaKnown RBP4.56□□□□□ -1.68
MCF2-201ENST00000338585 ARHGAP1Q07960 439 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 TBX2Q13207 712 aaPredicted RBP4.56□□□□□ -1.68
MCF2-201ENST00000338585 TTLL4Q14679 1199 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 BMT2Q1RMZ1 405 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 MORN1Q5T089 497 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 SPECC1LQ69YQ0 1117 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 OTUD6AQ7L8S5 288 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 ZNF467Q7Z7K2 595 aaPredicted RBP4.56□□□□□ -1.68
MCF2-201ENST00000338585 ANKRD20A12PQ8NF67 263 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 GLG1Q92896 1179 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 TMEM143Q96AN5 459 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 ZBTB10Q96DT7 871 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 CTAGE1Q96RT6 745 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 CEP89Q96ST8 783 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 TINF2Q9BSI4 451 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 STRA6Q9BX79 667 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 ARHGAP39Q9C0H5 1083 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 ZCCHC17Q9NP64 241 aaKnown RBP4.56□□□□□ -1.68
MCF2-201ENST00000338585 VTA1Q9NP79 307 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 PDLIM7Q9NR12 457 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 LARSQ9P2J5 1176 aaKnown RBP4.56□□□□□ -1.68
MCF2-201ENST00000338585 IMPACTQ9P2X3 320 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 SEL1LQ9UBV2 794 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 ZHX1Q9UKY1 873 aaPredicted RBP4.56□□□□□ -1.68
MCF2-201ENST00000338585 TRAF3IP3Q9Y228 551 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 DIS3Q9Y2L1 958 aaKnown RBP4.56□□□□□ -1.68
MCF2-201ENST00000338585 ZSWIM8A7E2V4 1837 aa4.56□□□□□ -1.68
MCF2-201ENST00000338585 ADGRA3Q8IWK6 1321 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms