RNA–Protein interactions for RNA: ENST00000334504.11

COL4A6-201, Transcript of collagen type IV alpha 6 chain, humanhuman

APPRIS P1 TSL 5 BASIC

Gene COL4A6, Length 6,700 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-201ENST00000334504 CDC25AP30304 524 aa10.47□□□□□ -0.73
COL4A6-201ENST00000334504 CAV1Q03135 178 aa10.47□□□□□ -0.73
COL4A6-201ENST00000334504 KDSRQ06136 332 aa10.47□□□□□ -0.73
COL4A6-201ENST00000334504 SF3B3Q15393 1217 aaKnown RBP10.47□□□□□ -0.73
COL4A6-201ENST00000334504 SSH3Q8TE77 659 aa10.47□□□□□ -0.73
COL4A6-201ENST00000334504 SLC40A1Q9NP59 571 aa10.47□□□□□ -0.73
COL4A6-201ENST00000334504 GRID2IPA4D2P6 1211 aa10.47□□□□□ -0.73
COL4A6-201ENST00000334504 NBPF26B4DH59 902 aa10.47□□□□□ -0.73
COL4A6-201ENST00000334504 PPP1R37O75864 691 aa10.47□□□□□ -0.73
COL4A6-201ENST00000334504 IL10P22301 178 aa10.47□□□□□ -0.73
COL4A6-201ENST00000334504 VSNL1P62760 191 aa10.47□□□□□ -0.73
COL4A6-201ENST00000334504 FBXO11Q86XK2 927 aa10.47□□□□□ -0.73
COL4A6-201ENST00000334504 TAGAPQ8N103 731 aa10.47□□□□□ -0.73
COL4A6-201ENST00000334504 NBPF15Q8N660 670 aa10.47□□□□□ -0.73
COL4A6-201ENST00000334504 DHX38Q92620 1227 aaKnown RBP10.47□□□□□ -0.73
COL4A6-201ENST00000334504 CCT8L2Q96SF2 557 aa10.47□□□□□ -0.73
COL4A6-201ENST00000334504 EDEM3Q9BZQ6 932 aa10.47□□□□□ -0.73
COL4A6-201ENST00000334504 BABAM1Q9NWV8 329 aa10.47□□□□□ -0.73
COL4A6-201ENST00000334504 MMP1P03956 469 aa10.47□□□□□ -0.73
COL4A6-201ENST00000334504 S100A5P33763 92 aa10.47□□□□□ -0.73
COL4A6-201ENST00000334504 PRAMEP78395 509 aa10.47□□□□□ -0.73
COL4A6-201ENST00000334504 ZBTB33Q86T24 672 aa10.47□□□□□ -0.73
COL4A6-201ENST00000334504 SPATA17Q96L03 361 aa10.47□□□□□ -0.73
COL4A6-201ENST00000334504 EMILIN3Q9NT22 766 aa10.47□□□□□ -0.73
COL4A6-201ENST00000334504 CCNL1Q9UK58 526 aaPredicted RBP10.47□□□□□ -0.73
COL4A6-201ENST00000334504 POTEB3A0JP26 581 aa10.47□□□□□ -0.73
COL4A6-201ENST00000334504 MEIS1O00470 390 aa10.47□□□□□ -0.73
COL4A6-201ENST00000334504 MED7O43513 233 aa10.47□□□□□ -0.73
COL4A6-201ENST00000334504 ZSCAN20P17040 1043 aaPredicted RBP10.47□□□□□ -0.73
COL4A6-201ENST00000334504 PMLP29590 882 aa10.47□□□□□ -0.73
COL4A6-201ENST00000334504 POTEBQ6S5H4 581 aa10.47□□□□□ -0.73
COL4A6-201ENST00000334504 RPS6KC1Q96S38 1066 aa10.47□□□□□ -0.73
COL4A6-201ENST00000334504 GID8Q9NWU2 228 aa10.47□□□□□ -0.73
COL4A6-201ENST00000334504 TTC7AQ9ULT0 858 aaPredicted RBP10.47□□□□□ -0.73
COL4A6-201ENST00000334504 SRPRBQ9Y5M8 271 aaKnown RBP10.47□□□□□ -0.73
COL4A6-201ENST00000334504 PRR23D1E9PI22 279 aaPredicted RBP10.46□□□□□ -0.73
COL4A6-201ENST00000334504 H0YIN7 160 aa10.46□□□□□ -0.73
COL4A6-201ENST00000334504 HOXB7P09629 217 aa10.46□□□□□ -0.73
COL4A6-201ENST00000334504 PRR23D2P0DMB1 279 aaPredicted RBP10.46□□□□□ -0.73
COL4A6-201ENST00000334504 SCP2P22307 547 aa10.46□□□□□ -0.73
COL4A6-201ENST00000334504 SERPINB1P30740 379 aa10.46□□□□□ -0.73
COL4A6-201ENST00000334504 IL13P35225 146 aa10.46□□□□□ -0.73
COL4A6-201ENST00000334504 PARP10Q53GL7 1025 aa10.46□□□□□ -0.73
COL4A6-201ENST00000334504 KRT39Q6A163 491 aa10.46□□□□□ -0.73
COL4A6-201ENST00000334504 SNX19Q92543 992 aa10.46□□□□□ -0.73
COL4A6-201ENST00000334504 MTBPQ96DY7 904 aa10.46□□□□□ -0.73
COL4A6-201ENST00000334504 ZFYVE19Q96K21 471 aa10.46□□□□□ -0.73
COL4A6-201ENST00000334504 SLC13A1Q9BZW2 595 aa10.46□□□□□ -0.73
COL4A6-201ENST00000334504 DDX47Q9H0S4 455 aaKnown RBP10.46□□□□□ -0.73
COL4A6-201ENST00000334504 STMN3Q9NZ72 180 aa10.46□□□□□ -0.73
COL4A6-201ENST00000334504 CHMP2BQ9UQN3 213 aa10.46□□□□□ -0.73
COL4A6-201ENST00000334504 MYL1P05976 194 aa10.46□□□□□ -0.73
COL4A6-201ENST00000334504 ZNF211Q13398 564 aaPredicted RBP10.46□□□□□ -0.73
COL4A6-201ENST00000334504 DAB2IPQ5VWQ8 1189 aa10.46□□□□□ -0.73
COL4A6-201ENST00000334504 UNC5CLQ8IV45 518 aa10.46□□□□□ -0.73
COL4A6-201ENST00000334504 SH2D3CQ8N5H7 860 aa10.46□□□□□ -0.73
COL4A6-201ENST00000334504 CCNYL1Q8N7R7 359 aa10.46□□□□□ -0.73
COL4A6-201ENST00000334504 SH3GL1Q99961 368 aa10.46□□□□□ -0.73
COL4A6-201ENST00000334504 ALG13Q9NP73 1137 aaKnown RBP10.46□□□□□ -0.73
COL4A6-201ENST00000334504 ATP1A1P05023 1023 aaKnown RBP10.46□□□□□ -0.74
COL4A6-201ENST00000334504 NR5A1Q13285 461 aa10.46□□□□□ -0.74
COL4A6-201ENST00000334504 AGGF1Q8N302 714 aaeCLIP10.46□□□□□ -0.74
COL4A6-201ENST00000334504 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.46□□□□□ -0.74
COL4A6-201ENST00000334504 SEC16BQ96JE7 1060 aa10.46□□□□□ -0.74
COL4A6-201ENST00000334504 FAM81BQ96LP2 452 aa10.46□□□□□ -0.74
COL4A6-201ENST00000334504 MRPL11Q9Y3B7 192 aaKnown RBP10.46□□□□□ -0.74
COL4A6-201ENST00000334504 PCDHB6Q9Y5E3 794 aa10.46□□□□□ -0.74
COL4A6-201ENST00000334504 A0A1B0GW55 424 aa10.46□□□□□ -0.74
COL4A6-201ENST00000334504 PHF20L1A8MW92 1017 aa10.46□□□□□ -0.74
COL4A6-201ENST00000334504 M0R2C6 588 aa10.46□□□□□ -0.74
COL4A6-201ENST00000334504 DUX4L2P0CJ85 424 aa10.46□□□□□ -0.74
COL4A6-201ENST00000334504 DUX4L3P0CJ86 424 aa10.46□□□□□ -0.74
COL4A6-201ENST00000334504 DUX4L4P0CJ87 422 aa10.46□□□□□ -0.74
COL4A6-201ENST00000334504 DUX4L5P0CJ88 424 aa10.46□□□□□ -0.74
COL4A6-201ENST00000334504 DUX4L6P0CJ89 424 aa10.46□□□□□ -0.74
COL4A6-201ENST00000334504 DUX4L7P0CJ90 424 aa10.46□□□□□ -0.74
COL4A6-201ENST00000334504 ALAS1P13196 640 aa10.46□□□□□ -0.74
COL4A6-201ENST00000334504 CHN1P15882 459 aa10.46□□□□□ -0.74
COL4A6-201ENST00000334504 CTCFP49711 727 aaPredicted RBP10.46□□□□□ -0.74
COL4A6-201ENST00000334504 PPM1NQ8N819 430 aa10.46□□□□□ -0.74
COL4A6-201ENST00000334504 PI4K2BQ8TCG2 481 aa10.46□□□□□ -0.74
COL4A6-201ENST00000334504 TEX12Q9BXU0 123 aa10.46□□□□□ -0.74
COL4A6-201ENST00000334504 DUX4Q9UBX2 424 aa10.46□□□□□ -0.74
COL4A6-201ENST00000334504 TARSL2A2RTX5 802 aaKnown RBP10.46□□□□□ -0.74
COL4A6-201ENST00000334504 XPO1O14980 1071 aaKnown RBP10.46□□□□□ -0.74
COL4A6-201ENST00000334504 PDE5AO76074 875 aa10.46□□□□□ -0.74
COL4A6-201ENST00000334504 CHURC1Q8WUH1 139 aa10.46□□□□□ -0.74
COL4A6-201ENST00000334504 PER1O15534 1290 aaPredicted RBP10.45□□□□□ -0.74
COL4A6-201ENST00000334504 PLCG1P19174 1290 aa10.45□□□□□ -0.74
COL4A6-201ENST00000334504 CD58P19256 250 aa10.45□□□□□ -0.74
COL4A6-201ENST00000334504 PSMA2P25787 234 aa10.45□□□□□ -0.74
COL4A6-201ENST00000334504 MRPS35P82673 323 aaKnown RBP10.45□□□□□ -0.74
COL4A6-201ENST00000334504 MECOMQ03112 1051 aa10.45□□□□□ -0.74
COL4A6-201ENST00000334504 CYGBQ8WWM9 190 aa10.45□□□□□ -0.74
COL4A6-201ENST00000334504 C10orf88Q9H8K7 445 aa10.45□□□□□ -0.74
COL4A6-201ENST00000334504 LGR6Q9HBX8 967 aa10.45□□□□□ -0.74
COL4A6-201ENST00000334504 SEPT9Q9UHD8 586 aaPredicted RBP10.45□□□□□ -0.74
COL4A6-201ENST00000334504 CAB39Q9Y376 341 aaPredicted RBP10.45□□□□□ -0.74
COL4A6-201ENST00000334504 PCDH11XQ9BZA7 1347 aa10.45□□□□□ -0.74
COL4A6-201ENST00000334504 PCDH11YQ9BZA8 1340 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms