RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 SLITRK6Q9H5Y7 841 aa14.58□□□□□ -0.08
CCDC88C-201ENST00000331194 STX8Q9UNK0 236 aa14.58□□□□□ -0.08
CCDC88C-201ENST00000331194 STXBP5LQ9Y2K9 1186 aa14.58□□□□□ -0.08
CCDC88C-201ENST00000331194 SNUPNO95149 360 aaKnown RBP14.58□□□□□ -0.08
CCDC88C-201ENST00000331194 GH1P01241 217 aa14.58□□□□□ -0.08
CCDC88C-201ENST00000331194 EIF3BP55884 814 aaKnown RBP14.58□□□□□ -0.08
CCDC88C-201ENST00000331194 COASYQ13057 564 aa14.58□□□□□ -0.08
CCDC88C-201ENST00000331194 NONOQ15233 471 aaKnown RBP eCLIP14.58□□□□□ -0.08
CCDC88C-201ENST00000331194 NKX1-1Q15270 411 aaPredicted RBP14.58□□□□□ -0.08
CCDC88C-201ENST00000331194 GALNTL6Q49A17 601 aa14.58□□□□□ -0.08
CCDC88C-201ENST00000331194 ZCWPW2Q504Y3 356 aa14.58□□□□□ -0.08
CCDC88C-201ENST00000331194 ZDHHC24Q6UX98 284 aa14.58□□□□□ -0.08
CCDC88C-201ENST00000331194 TRIM59Q8IWR1 403 aa14.58□□□□□ -0.08
CCDC88C-201ENST00000331194 CNKSR1Q969H4 720 aa14.58□□□□□ -0.08
CCDC88C-201ENST00000331194 SH3GLB2Q9NR46 395 aa14.58□□□□□ -0.08
CCDC88C-201ENST00000331194 DAAM1Q9Y4D1 1078 aa14.58□□□□□ -0.08
CCDC88C-201ENST00000331194 USP15Q9Y4E8 981 aaPredicted RBP14.58□□□□□ -0.08
CCDC88C-201ENST00000331194 RPTORQ8N122 1335 aa14.58□□□□□ -0.08
CCDC88C-201ENST00000331194 A6NHS1 94 aa14.57□□□□□ -0.08
CCDC88C-201ENST00000331194 LAD1O00515 517 aa14.57□□□□□ -0.08
CCDC88C-201ENST00000331194 LGR5O75473 907 aa14.57□□□□□ -0.08
CCDC88C-201ENST00000331194 BNIP1Q12981 228 aa14.57□□□□□ -0.08
CCDC88C-201ENST00000331194 COBLL1Q53SF7 1204 aa14.57□□□□□ -0.08
CCDC88C-201ENST00000331194 DUPD1Q68J44 220 aa14.57□□□□□ -0.08
CCDC88C-201ENST00000331194 NEK8Q86SG6 692 aa14.57□□□□□ -0.08
CCDC88C-201ENST00000331194 CCDC25Q86WR0 208 aa14.57□□□□□ -0.08
CCDC88C-201ENST00000331194 ZNF513Q8N8E2 541 aaPredicted RBP14.57□□□□□ -0.08
CCDC88C-201ENST00000331194 SNX29Q8TEQ0 813 aa14.57□□□□□ -0.08
CCDC88C-201ENST00000331194 C18orf8Q96DM3 657 aa14.57□□□□□ -0.08
CCDC88C-201ENST00000331194 NAF1Q96HR8 494 aaKnown RBP14.57□□□□□ -0.08
CCDC88C-201ENST00000331194 ERP44Q9BS26 406 aa14.57□□□□□ -0.08
CCDC88C-201ENST00000331194 NUCKS1Q9H1E3 243 aaKnown RBP14.57□□□□□ -0.08
CCDC88C-201ENST00000331194 TMOD4Q9NZQ9 345 aa14.57□□□□□ -0.08
CCDC88C-201ENST00000331194 ZFATQ9P243 1243 aa14.57□□□□□ -0.08
CCDC88C-201ENST00000331194 COL1A1P02452 1464 aaPredicted RBP14.57□□□□□ -0.08
CCDC88C-201ENST00000331194 PVALEFA0A1B0GWK0 134 aa14.57□□□□□ -0.08
CCDC88C-201ENST00000331194 CES2O00748 559 aa14.57□□□□□ -0.08
CCDC88C-201ENST00000331194 STARD3NLO95772 234 aa14.57□□□□□ -0.08
CCDC88C-201ENST00000331194 ICA1Q05084 483 aa14.57□□□□□ -0.08
CCDC88C-201ENST00000331194 LONRF1Q17RB8 773 aa14.57□□□□□ -0.08
CCDC88C-201ENST00000331194 SEPT14Q6ZU15 432 aa14.57□□□□□ -0.08
CCDC88C-201ENST00000331194 RASGEF1CQ8N431 466 aa14.57□□□□□ -0.08
CCDC88C-201ENST00000331194 MCM9Q9NXL9 1143 aa14.57□□□□□ -0.08
CCDC88C-201ENST00000331194 CICQ96RK0 1608 aaPredicted RBP14.57□□□□□ -0.08
CCDC88C-201ENST00000331194 CCDC88AQ3V6T2 1871 aa14.57□□□□□ -0.08
CCDC88C-201ENST00000331194 CCDC169A6NNP5 214 aa14.57□□□□□ -0.08
CCDC88C-201ENST00000331194 KRT13P13646 458 aa14.57□□□□□ -0.08
CCDC88C-201ENST00000331194 EXOC3L1Q86VI1 746 aa14.57□□□□□ -0.08
CCDC88C-201ENST00000331194 RAD54LQ92698 747 aa14.57□□□□□ -0.08
CCDC88C-201ENST00000331194 PGM2Q96G03 612 aa14.57□□□□□ -0.08
CCDC88C-201ENST00000331194 ABCB11O95342 1321 aa14.56□□□□□ -0.08
CCDC88C-201ENST00000331194 IGSF9BQ9UPX0 1349 aa14.56□□□□□ -0.08
CCDC88C-201ENST00000331194 ANKRD33BA6NCL7 494 aa14.56□□□□□ -0.08
CCDC88C-201ENST00000331194 GNAT1P11488 350 aa14.56□□□□□ -0.08
CCDC88C-201ENST00000331194 UCHL3P15374 230 aa14.56□□□□□ -0.08
CCDC88C-201ENST00000331194 PECAM1P16284 738 aaPredicted RBP14.56□□□□□ -0.08
CCDC88C-201ENST00000331194 MGAT5Q09328 741 aa14.56□□□□□ -0.08
CCDC88C-201ENST00000331194 ADAM9Q13443 819 aa14.56□□□□□ -0.08
CCDC88C-201ENST00000331194 BARGINQ6ZT62 677 aa14.56□□□□□ -0.08
CCDC88C-201ENST00000331194 UTP4Q969X6 686 aaKnown RBP14.56□□□□□ -0.08
CCDC88C-201ENST00000331194 ARHGEF3Q9NR81 526 aa14.56□□□□□ -0.08
CCDC88C-201ENST00000331194 CTNNAL1Q9UBT7 734 aa14.56□□□□□ -0.08
CCDC88C-201ENST00000331194 CHORDC1Q9UHD1 332 aaPredicted RBP14.56□□□□□ -0.08
CCDC88C-201ENST00000331194 SPATA31A1Q5TZJ5 1347 aa14.56□□□□□ -0.08
CCDC88C-201ENST00000331194 H0Y3Z8 333 aa14.56□□□□□ -0.08
CCDC88C-201ENST00000331194 DDX3XO00571 662 aaKnown RBP eCLIP14.56□□□□□ -0.08
CCDC88C-201ENST00000331194 PLCG2P16885 1265 aa14.56□□□□□ -0.08
CCDC88C-201ENST00000331194 KLRK1P26718 216 aa14.56□□□□□ -0.08
CCDC88C-201ENST00000331194 RAB27AP51159 221 aa14.56□□□□□ -0.08
CCDC88C-201ENST00000331194 AUHQ13825 339 aaKnown RBP14.56□□□□□ -0.08
CCDC88C-201ENST00000331194 TNIP1Q15025 636 aa14.56□□□□□ -0.08
CCDC88C-201ENST00000331194 ANO7Q6IWH7 933 aa14.56□□□□□ -0.08
CCDC88C-201ENST00000331194 ANKLE1Q8NAG6 615 aa14.56□□□□□ -0.08
CCDC88C-201ENST00000331194 SH3RF3Q8TEJ3 882 aaPredicted RBP14.56□□□□□ -0.08
CCDC88C-201ENST00000331194 DNAJC19Q96DA6 116 aa14.56□□□□□ -0.08
CCDC88C-201ENST00000331194 ARPP21Q9UBL0 812 aaPredicted RBP14.56□□□□□ -0.08
CCDC88C-201ENST00000331194 A0A1B0GVG6 124 aa14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 ANKRD63C9JTQ0 380 aa14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 SMIM24O75264 130 aa14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 OAS1P00973 400 aaKnown RBP14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 NUDT17P0C025 328 aa14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 GALCP54803 685 aa14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 PLS1Q14651 629 aa14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 CALCRLQ16602 461 aa14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 FAM26FQ5R3K3 315 aa14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 JAMLQ86YT9 394 aa14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 HES6Q96HZ4 224 aa14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 TMEM237Q96Q45 408 aa14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 RAB17Q9H0T7 212 aa14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 KCNK9Q9NPC2 374 aa14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 KIAA0391O15091 583 aaKnown RBP14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 H2AFZP0C0S5 128 aa14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 RPL21P46778 160 aaKnown RBP14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 PDE6CP51160 858 aa14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 MECOMQ03112 1051 aa14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 MPP2Q14168 576 aa14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 RBBP5Q15291 538 aaKnown RBP14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 DPY19L2P1Q6NXN4 242 aa14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 USP17L2Q6R6M4 530 aa14.55□□□□□ -0.08
CCDC88C-201ENST00000331194 H2AFVQ71UI9 128 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms