RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 TPM4P67936 248 aa11.1□□□□□ -0.63
HMGB3-201ENST00000325307 LRRC41Q15345 812 aa11.1□□□□□ -0.63
HMGB3-201ENST00000325307 FAM167AQ96KS9 214 aa11.1□□□□□ -0.63
HMGB3-201ENST00000325307 KCNF1Q9H3M0 494 aa11.1□□□□□ -0.63
HMGB3-201ENST00000325307 PARVGQ9HBI0 331 aa11.1□□□□□ -0.63
HMGB3-201ENST00000325307 MGAMO43451 1857 aa11.1□□□□□ -0.63
HMGB3-201ENST00000325307 LGALS2P05162 132 aa11.1□□□□□ -0.63
HMGB3-201ENST00000325307 AKR1A1P14550 325 aa11.1□□□□□ -0.63
HMGB3-201ENST00000325307 ATP4AP20648 1035 aa11.1□□□□□ -0.63
HMGB3-201ENST00000325307 POLGP54098 1239 aaPredicted RBP11.1□□□□□ -0.63
HMGB3-201ENST00000325307 MYL5Q02045 173 aa11.1□□□□□ -0.63
HMGB3-201ENST00000325307 PSMD2Q13200 908 aa11.1□□□□□ -0.63
HMGB3-201ENST00000325307 AFAP1L1Q8TED9 768 aa11.1□□□□□ -0.63
HMGB3-201ENST00000325307 EMID1Q96A84 441 aaPredicted RBP11.1□□□□□ -0.63
HMGB3-201ENST00000325307 MRPL44Q9H9J2 332 aaKnown RBP11.1□□□□□ -0.63
HMGB3-201ENST00000325307 SYNRGQ9UMZ2 1314 aa11.09□□□□□ -0.63
HMGB3-201ENST00000325307 PPP1R3GB7ZBB8 358 aa11.09□□□□□ -0.63
HMGB3-201ENST00000325307 MYCNP04198 464 aaPredicted RBP11.09□□□□□ -0.63
HMGB3-201ENST00000325307 GAP43P17677 238 aa11.09□□□□□ -0.63
HMGB3-201ENST00000325307 GUCY2CP25092 1073 aa11.09□□□□□ -0.63
HMGB3-201ENST00000325307 PSEN1P49768 467 aa11.09□□□□□ -0.63
HMGB3-201ENST00000325307 TRIM32Q13049 653 aa11.09□□□□□ -0.63
HMGB3-201ENST00000325307 PAK1Q13153 545 aa11.09□□□□□ -0.63
HMGB3-201ENST00000325307 DGKDQ16760 1214 aa11.09□□□□□ -0.63
HMGB3-201ENST00000325307 BRDTQ58F21 947 aaPredicted RBP11.09□□□□□ -0.63
HMGB3-201ENST00000325307 ODR4Q5SWX8 454 aa11.09□□□□□ -0.63
HMGB3-201ENST00000325307 NELFBQ8WX92 580 aa11.09□□□□□ -0.63
HMGB3-201ENST00000325307 ERAP1Q9NZ08 941 aa11.09□□□□□ -0.63
HMGB3-201ENST00000325307 ODF2LQ9ULJ1 636 aa11.09□□□□□ -0.63
HMGB3-201ENST00000325307 EMSYQ7Z589 1322 aa11.09□□□□□ -0.63
HMGB3-201ENST00000325307 PPFIA4O75335 1185 aa11.09□□□□□ -0.63
HMGB3-201ENST00000325307 LGR5O75473 907 aa11.09□□□□□ -0.63
HMGB3-201ENST00000325307 IRF5Q13568 498 aa11.09□□□□□ -0.63
HMGB3-201ENST00000325307 PLPPR4Q7Z2D5 763 aa11.09□□□□□ -0.63
HMGB3-201ENST00000325307 KIAA0895Q8NCT3 520 aa11.09□□□□□ -0.63
HMGB3-201ENST00000325307 BPIFA3Q9BQP9 254 aa11.09□□□□□ -0.63
HMGB3-201ENST00000325307 GPRC5CQ9NQ84 441 aa11.09□□□□□ -0.63
HMGB3-201ENST00000325307 ZNF215Q9UL58 517 aaPredicted RBP11.09□□□□□ -0.63
HMGB3-201ENST00000325307 DGAT1O75907 488 aa11.08□□□□□ -0.63
HMGB3-201ENST00000325307 STBD1O95210 358 aa11.08□□□□□ -0.63
HMGB3-201ENST00000325307 GNRH1P01148 92 aa11.08□□□□□ -0.63
HMGB3-201ENST00000325307 MMP3P08254 477 aa11.08□□□□□ -0.63
HMGB3-201ENST00000325307 PRKAR2AP13861 404 aaKnown RBP11.08□□□□□ -0.63
HMGB3-201ENST00000325307 ERCC5P28715 1186 aaPredicted RBP11.08□□□□□ -0.63
HMGB3-201ENST00000325307 ATP8B4Q8TF62 1192 aa11.08□□□□□ -0.63
HMGB3-201ENST00000325307 SLC7A3Q8WY07 619 aa11.08□□□□□ -0.63
HMGB3-201ENST00000325307 DRC1Q96MC2 740 aa11.08□□□□□ -0.63
HMGB3-201ENST00000325307 ATP6V0A4Q9HBG4 840 aa11.08□□□□□ -0.63
HMGB3-201ENST00000325307 GNEQ9Y223 722 aaKnown RBP11.08□□□□□ -0.63
HMGB3-201ENST00000325307 MYH9P35579 1960 aaKnown RBP11.08□□□□□ -0.64
HMGB3-201ENST00000325307 GCNT3O95395 438 aa11.08□□□□□ -0.64
HMGB3-201ENST00000325307 MSNP26038 577 aaKnown RBP11.08□□□□□ -0.64
HMGB3-201ENST00000325307 SLC26A2P50443 739 aa11.08□□□□□ -0.64
HMGB3-201ENST00000325307 CACNB2Q08289 660 aaPredicted RBP11.08□□□□□ -0.64
HMGB3-201ENST00000325307 HSP90AA4PQ58FG1 418 aa11.08□□□□□ -0.64
HMGB3-201ENST00000325307 FAM43BQ6ZT52 329 aaPredicted RBP11.08□□□□□ -0.64
HMGB3-201ENST00000325307 FAM178BQ8IXR5 827 aa11.08□□□□□ -0.64
HMGB3-201ENST00000325307 MYOCDQ8IZQ8 938 aa11.08□□□□□ -0.64
HMGB3-201ENST00000325307 ADSSL1Q8N142 457 aa11.08□□□□□ -0.64
HMGB3-201ENST00000325307 GLIS3Q8NEA6 775 aa11.08□□□□□ -0.64
HMGB3-201ENST00000325307 TRPV1Q8NER1 839 aa11.08□□□□□ -0.64
HMGB3-201ENST00000325307 LARSQ9P2J5 1176 aaKnown RBP11.08□□□□□ -0.64
HMGB3-201ENST00000325307 TRIM17Q9Y577 477 aa11.08□□□□□ -0.64
HMGB3-201ENST00000325307 CYBAP13498 195 aa11.08□□□□□ -0.64
HMGB3-201ENST00000325307 SOX10P56693 466 aa11.08□□□□□ -0.64
HMGB3-201ENST00000325307 IGBP1P78318 339 aa11.08□□□□□ -0.64
HMGB3-201ENST00000325307 TBC1D8BQ0IIM8 1120 aa11.08□□□□□ -0.64
HMGB3-201ENST00000325307 PLCB4Q15147 1175 aa11.08□□□□□ -0.64
HMGB3-201ENST00000325307 NELFCDQ8IXH7 590 aa11.08□□□□□ -0.64
HMGB3-201ENST00000325307 MCPH1Q8NEM0 835 aa11.08□□□□□ -0.64
HMGB3-201ENST00000325307 NRBP1Q9UHY1 535 aa11.08□□□□□ -0.64
HMGB3-201ENST00000325307 FRMD3A2A2Y4 597 aa11.07□□□□□ -0.64
HMGB3-201ENST00000325307 HMGCRP04035 888 aa11.07□□□□□ -0.64
HMGB3-201ENST00000325307 C6orf222P0C671 652 aaPredicted RBP11.07□□□□□ -0.64
HMGB3-201ENST00000325307 ZSCAN20P17040 1043 aaPredicted RBP11.07□□□□□ -0.64
HMGB3-201ENST00000325307 PPP1R2P41236 205 aa11.07□□□□□ -0.64
HMGB3-201ENST00000325307 EMC2Q15006 297 aa11.07□□□□□ -0.64
HMGB3-201ENST00000325307 CREBRFQ8IUR6 639 aa11.07□□□□□ -0.64
HMGB3-201ENST00000325307 TIPINQ9BVW5 301 aa11.07□□□□□ -0.64
HMGB3-201ENST00000325307 FGFBP2Q9BYJ0 223 aa11.07□□□□□ -0.64
HMGB3-201ENST00000325307 NFE2L3Q9Y4A8 694 aa11.07□□□□□ -0.64
HMGB3-201ENST00000325307 H3BRB1 525 aa11.07□□□□□ -0.64
HMGB3-201ENST00000325307 IKBKBO14920 756 aa11.07□□□□□ -0.64
HMGB3-201ENST00000325307 KIF20AO95235 890 aa11.07□□□□□ -0.64
HMGB3-201ENST00000325307 MYL3P08590 195 aa11.07□□□□□ -0.64
HMGB3-201ENST00000325307 CPT1AP50416 773 aa11.07□□□□□ -0.64
HMGB3-201ENST00000325307 BEX3Q00994 111 aa11.07□□□□□ -0.64
HMGB3-201ENST00000325307 EHHADHQ08426 723 aa11.07□□□□□ -0.64
HMGB3-201ENST00000325307 CT47A1Q5JQC4 288 aaPredicted RBP11.07□□□□□ -0.64
HMGB3-201ENST00000325307 NIFKQ9BYG3 293 aaKnown RBP11.07□□□□□ -0.64
HMGB3-201ENST00000325307 RNPEPQ9H4A4 650 aa11.07□□□□□ -0.64
HMGB3-201ENST00000325307 TUT1Q9H6E5 874 aaKnown RBP11.07□□□□□ -0.64
HMGB3-201ENST00000325307 SUGCTQ9HAC7 445 aa11.07□□□□□ -0.64
HMGB3-201ENST00000325307 SPC25Q9HBM1 224 aa11.07□□□□□ -0.64
HMGB3-201ENST00000325307 SEL1LQ9UBV2 794 aa11.07□□□□□ -0.64
HMGB3-201ENST00000325307 RWDD2AQ9UIY3 292 aa11.07□□□□□ -0.64
HMGB3-201ENST00000325307 TRIM49BA6NDI0 452 aa11.07□□□□□ -0.64
HMGB3-201ENST00000325307 CCDC169A6NNP5 214 aa11.07□□□□□ -0.64
HMGB3-201ENST00000325307 HBP1O60381 514 aa11.07□□□□□ -0.64
HMGB3-201ENST00000325307 RARBP10826 455 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms