RNA–Protein interactions for RNA: ENST00000311351.8

LSM1-201, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM1, Length 1,147 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-201ENST00000311351 ZSCAN31Q96LW9 406 aaPredicted RBP18.34■□□□□ 0.53
LSM1-201ENST00000311351 FAM20AQ96MK3 541 aa18.34■□□□□ 0.53
LSM1-201ENST00000311351 TMX1Q9H3N1 280 aa18.34■□□□□ 0.53
LSM1-201ENST00000311351 ERVK-5Q9HDB9 667 aa18.34■□□□□ 0.53
LSM1-201ENST00000311351 AKT3Q9Y243 479 aa18.34■□□□□ 0.53
LSM1-201ENST00000311351 MAGEB2O15479 319 aa18.33■□□□□ 0.52
LSM1-201ENST00000311351 MARCH6O60337 910 aa18.33■□□□□ 0.52
LSM1-201ENST00000311351 TBC1D8BQ0IIM8 1120 aa18.33■□□□□ 0.52
LSM1-201ENST00000311351 NFX1Q12986 1120 aaKnown RBP18.33■□□□□ 0.52
LSM1-201ENST00000311351 TARBP2Q15633 366 aaKnown RBP18.33■□□□□ 0.52
LSM1-201ENST00000311351 XKR3Q5GH77 459 aa18.33■□□□□ 0.52
LSM1-201ENST00000311351 PLA2G4FQ68DD2 849 aa18.33■□□□□ 0.52
LSM1-201ENST00000311351 NCAPH2Q6IBW4 605 aa18.33■□□□□ 0.52
LSM1-201ENST00000311351 MAP7D2Q96T17 732 aa18.33■□□□□ 0.52
LSM1-201ENST00000311351 SUGCTQ9HAC7 445 aa18.33■□□□□ 0.52
LSM1-201ENST00000311351 RC3H2Q9HBD1 1191 aaKnown RBP18.33■□□□□ 0.52
LSM1-201ENST00000311351 SH2B1Q9NRF2 756 aaPredicted RBP18.33■□□□□ 0.52
LSM1-201ENST00000311351 WRAP73Q9P2S5 460 aaPredicted RBP18.33■□□□□ 0.52
LSM1-201ENST00000311351 ADGRA3Q8IWK6 1321 aa18.32■□□□□ 0.52
LSM1-201ENST00000311351 ATG2AQ2TAZ0 1938 aa18.32■□□□□ 0.52
LSM1-201ENST00000311351 TBX3O15119 743 aa18.32■□□□□ 0.52
LSM1-201ENST00000311351 GTPBP6O43824 516 aaPredicted RBP18.32■□□□□ 0.52
LSM1-201ENST00000311351 MGEA5O60502 916 aa18.32■□□□□ 0.52
LSM1-201ENST00000311351 GPR32O75388 356 aa18.32■□□□□ 0.52
LSM1-201ENST00000311351 RPS6KA5O75582 802 aa18.32■□□□□ 0.52
LSM1-201ENST00000311351 IBSPP21815 317 aaPredicted RBP18.32■□□□□ 0.52
LSM1-201ENST00000311351 PSMC5P62195 406 aa18.32■□□□□ 0.52
LSM1-201ENST00000311351 SPIRE1Q08AE8 756 aa18.32■□□□□ 0.52
LSM1-201ENST00000311351 DRP2Q13474 957 aa18.32■□□□□ 0.52
LSM1-201ENST00000311351 RABEP1Q15276 862 aa18.32■□□□□ 0.52
LSM1-201ENST00000311351 FAM228AQ86W67 206 aa18.32■□□□□ 0.52
LSM1-201ENST00000311351 C8orf76Q96K31 380 aa18.32■□□□□ 0.52
LSM1-201ENST00000311351 CEP89Q96ST8 783 aa18.32■□□□□ 0.52
LSM1-201ENST00000311351 LLPHQ9BRT6 129 aaKnown RBP18.32■□□□□ 0.52
LSM1-201ENST00000311351 FTHL17Q9BXU8 183 aa18.32■□□□□ 0.52
LSM1-201ENST00000311351 TSPYL2Q9H2G4 693 aaPredicted RBP18.32■□□□□ 0.52
LSM1-201ENST00000311351 BRWD1Q9NSI6 2320 aa18.31■□□□□ 0.52
LSM1-201ENST00000311351 DDX11L8A8MPP1 907 aa18.31■□□□□ 0.52
LSM1-201ENST00000311351 POU3F3P20264 500 aaPredicted RBP18.31■□□□□ 0.52
LSM1-201ENST00000311351 CRYBB1P53674 252 aaPredicted RBP18.31■□□□□ 0.52
LSM1-201ENST00000311351 NLRP11P59045 1033 aaKnown RBP18.31■□□□□ 0.52
LSM1-201ENST00000311351 ANO5Q75V66 913 aa18.31■□□□□ 0.52
LSM1-201ENST00000311351 FBXO22Q8NEZ5 403 aa18.31■□□□□ 0.52
LSM1-201ENST00000311351 NIFKQ9BYG3 293 aaKnown RBP18.31■□□□□ 0.52
LSM1-201ENST00000311351 ST3GAL5Q9UNP4 418 aa18.31■□□□□ 0.52
LSM1-201ENST00000311351 VCANP13611 3396 aa18.3■□□□□ 0.52
LSM1-201ENST00000311351 NEMFO60524 1076 aa18.3■□□□□ 0.52
LSM1-201ENST00000311351 CD2BP2O95400 341 aaKnown RBP18.3■□□□□ 0.52
LSM1-201ENST00000311351 ATP2B1P20020 1258 aa18.3■□□□□ 0.52
LSM1-201ENST00000311351 TMOD1P28289 359 aa18.3■□□□□ 0.52
LSM1-201ENST00000311351 QARSP47897 775 aaKnown RBP18.3■□□□□ 0.52
LSM1-201ENST00000311351 HMGN5P82970 282 aaKnown RBP18.3■□□□□ 0.52
LSM1-201ENST00000311351 SAFBQ15424 915 aaKnown RBP eCLIP18.3■□□□□ 0.52
LSM1-201ENST00000311351 CALCRLQ16602 461 aa18.3■□□□□ 0.52
LSM1-201ENST00000311351 EPC2Q52LR7 807 aa18.3■□□□□ 0.52
LSM1-201ENST00000311351 SLFN12Q8IYM2 578 aa18.3■□□□□ 0.52
LSM1-201ENST00000311351 LXNQ9BS40 222 aa18.3■□□□□ 0.52
LSM1-201ENST00000311351 ADAMTS10Q9H324 1103 aa18.3■□□□□ 0.52
LSM1-201ENST00000311351 UPF2Q9HAU5 1272 aaKnown RBP18.3■□□□□ 0.52
LSM1-201ENST00000311351 RGL1Q9NZL6 768 aa18.3■□□□□ 0.52
LSM1-201ENST00000311351 FNDC1Q4ZHG4 1894 aaPredicted RBP18.3■□□□□ 0.52
LSM1-201ENST00000311351 TTC28Q96AY4 2481 aa18.29■□□□□ 0.52
LSM1-201ENST00000311351 BAG4O95429 457 aaKnown RBP18.29■□□□□ 0.52
LSM1-201ENST00000311351 GATMP50440 423 aa18.29■□□□□ 0.52
LSM1-201ENST00000311351 GPC3P51654 580 aa18.29■□□□□ 0.52
LSM1-201ENST00000311351 NPEPPSP55786 919 aa18.29■□□□□ 0.52
LSM1-201ENST00000311351 CYP4A11Q02928 519 aa18.29■□□□□ 0.52
LSM1-201ENST00000311351 EPHA7Q15375 998 aa18.29■□□□□ 0.52
LSM1-201ENST00000311351 NPAS4Q8IUM7 802 aa18.29■□□□□ 0.52
LSM1-201ENST00000311351 FIBCD1Q8N539 461 aa18.29■□□□□ 0.52
LSM1-201ENST00000311351 FAM184AQ8NB25 1140 aa18.29■□□□□ 0.52
LSM1-201ENST00000311351 ZNF689Q96CS4 500 aaPredicted RBP18.29■□□□□ 0.52
LSM1-201ENST00000311351 DYDC2Q96IM9 177 aa18.29■□□□□ 0.52
LSM1-201ENST00000311351 SCLT1Q96NL6 688 aa18.29■□□□□ 0.52
LSM1-201ENST00000311351 THEGQ9P2T0 379 aa18.29■□□□□ 0.52
LSM1-201ENST00000311351 DENND3A2RUS2 1198 aa18.28■□□□□ 0.52
LSM1-201ENST00000311351 DLL1O00548 723 aa18.28■□□□□ 0.52
LSM1-201ENST00000311351 GPR182O15218 404 aa18.28■□□□□ 0.52
LSM1-201ENST00000311351 ST18O60284 1047 aa18.28■□□□□ 0.52
LSM1-201ENST00000311351 DGKIO75912 1065 aa18.28■□□□□ 0.52
LSM1-201ENST00000311351 P4HBP07237 508 aaKnown RBP18.28■□□□□ 0.52
LSM1-201ENST00000311351 LINC00271P0C7V0 271 aa18.28■□□□□ 0.52
LSM1-201ENST00000311351 CTTNQ14247 550 aaKnown RBP18.28■□□□□ 0.52
LSM1-201ENST00000311351 SKIV2LQ15477 1246 aaKnown RBP18.28■□□□□ 0.52
LSM1-201ENST00000311351 PAN2Q504Q3 1202 aaKnown RBP18.28■□□□□ 0.52
LSM1-201ENST00000311351 TMEM192Q8IY95 271 aa18.28■□□□□ 0.52
LSM1-201ENST00000311351 CRIPAKQ8N1N5 446 aa18.28■□□□□ 0.52
LSM1-201ENST00000311351 ZNF579Q8NAF0 562 aaKnown RBP18.28■□□□□ 0.52
LSM1-201ENST00000311351 ADAM2Q99965 735 aa18.28■□□□□ 0.52
LSM1-201ENST00000311351 TMEM60Q9H2L4 133 aa18.28■□□□□ 0.52
LSM1-201ENST00000311351 CYP26B1Q9NR63 512 aa18.28■□□□□ 0.52
LSM1-201ENST00000311351 BMP2KQ9NSY1 1161 aaPredicted RBP18.28■□□□□ 0.52
LSM1-201ENST00000311351 MYO7AQ13402 2215 aa18.28■□□□□ 0.52
LSM1-201ENST00000311351 SPTBN5Q9NRC6 3674 aaKnown RBP18.27■□□□□ 0.52
LSM1-201ENST00000311351 IGKV6-21A0A0C4DH24 114 aa18.27■□□□□ 0.52
LSM1-201ENST00000311351 FGFR4P22455 802 aa18.27■□□□□ 0.52
LSM1-201ENST00000311351 MCM7P33993 719 aa18.27■□□□□ 0.52
LSM1-201ENST00000311351 CTNNB1P35222 781 aa18.27■□□□□ 0.52
LSM1-201ENST00000311351 SARSP49591 514 aaKnown RBP18.27■□□□□ 0.52
LSM1-201ENST00000311351 BTG3Q14201 252 aaPredicted RBP18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms