RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 PROM2Q8N271 834 aa10.57□□□□□ -0.72
COL6A3-201ENST00000295550 TEX12Q9BXU0 123 aa10.57□□□□□ -0.72
COL6A3-201ENST00000295550 NDE1Q9NXR1 346 aa10.57□□□□□ -0.72
COL6A3-201ENST00000295550 DR1Q01658 176 aa10.57□□□□□ -0.72
COL6A3-201ENST00000295550 YWHAHQ04917 246 aaPredicted RBP10.57□□□□□ -0.72
COL6A3-201ENST00000295550 NDST4Q9H3R1 872 aa10.57□□□□□ -0.72
COL6A3-201ENST00000295550 PCDHB4Q9Y5E5 795 aa10.57□□□□□ -0.72
COL6A3-201ENST00000295550 COPG1Q9Y678 874 aaKnown RBP10.57□□□□□ -0.72
COL6A3-201ENST00000295550 MOCS3O95396 460 aa10.57□□□□□ -0.72
COL6A3-201ENST00000295550 PMLP29590 882 aa10.57□□□□□ -0.72
COL6A3-201ENST00000295550 RWDD2BP57060 319 aa10.57□□□□□ -0.72
COL6A3-201ENST00000295550 ICA1Q05084 483 aa10.57□□□□□ -0.72
COL6A3-201ENST00000295550 SHC4Q6S5L8 630 aa10.57□□□□□ -0.72
COL6A3-201ENST00000295550 E2F6O75461 281 aa10.57□□□□□ -0.72
COL6A3-201ENST00000295550 PPARGC1AQ9UBK2 798 aaKnown RBP10.57□□□□□ -0.72
COL6A3-201ENST00000295550 CHUKO15111 745 aa10.57□□□□□ -0.72
COL6A3-201ENST00000295550 CFBP00751 764 aa10.57□□□□□ -0.72
COL6A3-201ENST00000295550 SLC4A1P02730 911 aa10.57□□□□□ -0.72
COL6A3-201ENST00000295550 KIF19Q2TAC6 998 aa10.57□□□□□ -0.72
COL6A3-201ENST00000295550 DEPTORQ8TB45 409 aa10.57□□□□□ -0.72
COL6A3-201ENST00000295550 POLR2MP0CAP2 368 aa10.57□□□□□ -0.72
COL6A3-201ENST00000295550 POLR2BP30876 1174 aaKnown RBP10.57□□□□□ -0.72
COL6A3-201ENST00000295550 RAPGEF5Q92565 580 aa10.57□□□□□ -0.72
COL6A3-201ENST00000295550 KIF1AQ12756 1690 aa10.57□□□□□ -0.72
COL6A3-201ENST00000295550 LIG4P49917 911 aa10.57□□□□□ -0.72
COL6A3-201ENST00000295550 MDM2Q00987 491 aaPredicted RBP10.57□□□□□ -0.72
COL6A3-201ENST00000295550 TMC4Q7Z404 712 aa10.57□□□□□ -0.72
COL6A3-201ENST00000295550 PCGF5Q86SE9 256 aa10.57□□□□□ -0.72
COL6A3-201ENST00000295550 STX18Q9P2W9 335 aaKnown RBP10.57□□□□□ -0.72
COL6A3-201ENST00000295550 PNMA2Q9UL42 364 aa10.57□□□□□ -0.72
COL6A3-201ENST00000295550 TMOD1P28289 359 aa10.56□□□□□ -0.72
COL6A3-201ENST00000295550 ALDH1B1P30837 517 aa10.56□□□□□ -0.72
COL6A3-201ENST00000295550 ERFEQ4G0M1 354 aa10.56□□□□□ -0.72
COL6A3-201ENST00000295550 SRRM1Q8IYB3 904 aaKnown RBP10.56□□□□□ -0.72
COL6A3-201ENST00000295550 TBRG4Q969Z0 631 aaKnown RBP eCLIP10.56□□□□□ -0.72
COL6A3-201ENST00000295550 COG4Q9H9E3 785 aa10.56□□□□□ -0.72
COL6A3-201ENST00000295550 CDC27P30260 824 aa10.56□□□□□ -0.72
COL6A3-201ENST00000295550 PPP1R18Q6NYC8 613 aa10.56□□□□□ -0.72
COL6A3-201ENST00000295550 RGS9BPQ6ZS82 235 aa10.56□□□□□ -0.72
COL6A3-201ENST00000295550 PARP9Q8IXQ6 854 aa10.56□□□□□ -0.72
COL6A3-201ENST00000295550 RIMBP3CA6NJZ7 1639 aa10.56□□□□□ -0.72
COL6A3-201ENST00000295550 RIMBP3BA6NNM3 1639 aa10.56□□□□□ -0.72
COL6A3-201ENST00000295550 RIMBP3Q9UFD9 1639 aa10.56□□□□□ -0.72
COL6A3-201ENST00000295550 DGKHQ86XP1 1220 aa10.56□□□□□ -0.72
COL6A3-201ENST00000295550 ELOA2Q8IYF1 753 aaPredicted RBP10.56□□□□□ -0.72
COL6A3-201ENST00000295550 A0A1B0GTH6 734 aa10.56□□□□□ -0.72
COL6A3-201ENST00000295550 MYO1EQ12965 1108 aa10.56□□□□□ -0.72
COL6A3-201ENST00000295550 KCTD6Q8NC69 237 aa10.56□□□□□ -0.72
COL6A3-201ENST00000295550 MAFGO15525 162 aa10.56□□□□□ -0.72
COL6A3-201ENST00000295550 MAPK4P31152 587 aa10.56□□□□□ -0.72
COL6A3-201ENST00000295550 STAT2P52630 851 aa10.56□□□□□ -0.72
COL6A3-201ENST00000295550 ARMC2Q8NEN0 867 aa10.56□□□□□ -0.72
COL6A3-201ENST00000295550 ZNF512BQ96KM6 892 aaPredicted RBP10.56□□□□□ -0.72
COL6A3-201ENST00000295550 SLC7A5Q01650 507 aa10.56□□□□□ -0.72
COL6A3-201ENST00000295550 ZNF280CQ8ND82 737 aa10.56□□□□□ -0.72
COL6A3-201ENST00000295550 CEP72Q9P209 647 aa10.56□□□□□ -0.72
COL6A3-201ENST00000295550 APOA1P02647 267 aa10.56□□□□□ -0.72
COL6A3-201ENST00000295550 PRR29P0C7W0 189 aa10.56□□□□□ -0.72
COL6A3-201ENST00000295550 CCDC85BQ15834 202 aaPredicted RBP10.56□□□□□ -0.72
COL6A3-201ENST00000295550 RBM43Q6ZSC3 357 aaKnown RBP10.56□□□□□ -0.72
COL6A3-201ENST00000295550 SUPT20HQ8NEM7 779 aa10.56□□□□□ -0.72
COL6A3-201ENST00000295550 CCDC195A0A1B0GUA6 201 aa10.56□□□□□ -0.72
COL6A3-201ENST00000295550 SYT2Q8N9I0 419 aaPredicted RBP10.56□□□□□ -0.72
COL6A3-201ENST00000295550 CHURC1Q8WUH1 139 aa10.56□□□□□ -0.72
COL6A3-201ENST00000295550 ZNF653Q96CK0 615 aa10.56□□□□□ -0.72
COL6A3-201ENST00000295550 GJB4Q9NTQ9 266 aa10.56□□□□□ -0.72
COL6A3-201ENST00000295550 SFMBT1Q9UHJ3 866 aa10.56□□□□□ -0.72
COL6A3-201ENST00000295550 CDV3Q9UKY7 258 aaKnown RBP10.56□□□□□ -0.72
COL6A3-201ENST00000295550 TSC22D4Q9Y3Q8 395 aa10.56□□□□□ -0.72
COL6A3-201ENST00000295550 CYP2D7A0A087X1C5 515 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 DAB1O75553 588 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 TRIM67Q6ZTA4 783 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 G3BP2Q9UN86 482 aaKnown RBP10.55□□□□□ -0.72
COL6A3-201ENST00000295550 A0A1B0GW55 424 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 DUX4L2P0CJ85 424 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 DUX4L3P0CJ86 424 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 DUX4L4P0CJ87 422 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 DUX4L5P0CJ88 424 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 DUX4L6P0CJ89 424 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 DUX4L7P0CJ90 424 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 CARSP49589 748 aaKnown RBP10.55□□□□□ -0.72
COL6A3-201ENST00000295550 FAM98CQ17RN3 349 aaKnown RBP10.55□□□□□ -0.72
COL6A3-201ENST00000295550 WDR24Q96S15 920 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 PIGSQ96S52 555 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 AMNQ9BXJ7 453 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.55□□□□□ -0.72
COL6A3-201ENST00000295550 DUX4Q9UBX2 424 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 MRPL11Q9Y3B7 192 aaKnown RBP10.55□□□□□ -0.72
COL6A3-201ENST00000295550 ZBTB24O43167 697 aaPredicted RBP10.55□□□□□ -0.72
COL6A3-201ENST00000295550 CHEK2O96017 543 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 BPIFB4P59827 614 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 FBXO11Q86XK2 927 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 OXER1Q8TDS5 423 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 NUDCD1Q96RS6 583 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 NFU1Q9UMS0 254 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 TRIM33Q9UPN9 1127 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 TRAF3IP3Q9Y228 551 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 AXIN2Q9Y2T1 843 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 ADGRG1Q9Y653 693 aa10.55□□□□□ -0.72
COL6A3-201ENST00000295550 HSPA6P17066 643 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms