RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 MLXIPLQ9NP71 852 aa12.3□□□□□ -0.44
USP53-201ENST00000274030 PCSK1NQ9UHG2 260 aa12.3□□□□□ -0.44
USP53-201ENST00000274030 GCC2Q8IWJ2 1684 aa12.3□□□□□ -0.44
USP53-201ENST00000274030 NCK2O43639 380 aa12.3□□□□□ -0.44
USP53-201ENST00000274030 PRELPP51888 382 aa12.3□□□□□ -0.44
USP53-201ENST00000274030 PHEXP78562 749 aa12.3□□□□□ -0.44
USP53-201ENST00000274030 PPP4R3CPQ6ZMV5 832 aa12.3□□□□□ -0.44
USP53-201ENST00000274030 TRIM42Q8IWZ5 723 aa12.3□□□□□ -0.44
USP53-201ENST00000274030 SPATA17Q96L03 361 aa12.3□□□□□ -0.44
USP53-201ENST00000274030 ABHD10Q9NUJ1 306 aa12.3□□□□□ -0.44
USP53-201ENST00000274030 WDR64B1ANS9 1081 aa12.3□□□□□ -0.44
USP53-201ENST00000274030 FOXN1O15353 648 aa12.3□□□□□ -0.44
USP53-201ENST00000274030 XXYLT1Q8NBI6 393 aa12.3□□□□□ -0.44
USP53-201ENST00000274030 PDCD6IPQ8WUM4 868 aaKnown RBP12.3□□□□□ -0.44
USP53-201ENST00000274030 SAAL1Q96ER3 474 aa12.3□□□□□ -0.44
USP53-201ENST00000274030 SH3GLB2Q9NR46 395 aa12.3□□□□□ -0.44
USP53-201ENST00000274030 IRAK4Q9NWZ3 460 aa12.3□□□□□ -0.44
USP53-201ENST00000274030 PRKAG2Q9UGJ0 569 aa12.3□□□□□ -0.44
USP53-201ENST00000274030 PLAAQ9Y263 795 aa12.3□□□□□ -0.44
USP53-201ENST00000274030 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.3□□□□□ -0.44
USP53-201ENST00000274030 ZBTB7AO95365 584 aa12.29□□□□□ -0.44
USP53-201ENST00000274030 COASYQ13057 564 aa12.29□□□□□ -0.44
USP53-201ENST00000274030 AP3B2Q13367 1082 aa12.29□□□□□ -0.44
USP53-201ENST00000274030 STXBP2Q15833 593 aa12.29□□□□□ -0.44
USP53-201ENST00000274030 MAPK6Q16659 721 aa12.29□□□□□ -0.44
USP53-201ENST00000274030 DCAF4Q8WV16 495 aa12.29□□□□□ -0.44
USP53-201ENST00000274030 HAUS8Q9BT25 410 aa12.29□□□□□ -0.44
USP53-201ENST00000274030 ATP6V0A4Q9HBG4 840 aa12.29□□□□□ -0.44
USP53-201ENST00000274030 DENND3A2RUS2 1198 aa12.29□□□□□ -0.44
USP53-201ENST00000274030 GSTA4O15217 222 aa12.29□□□□□ -0.44
USP53-201ENST00000274030 ZNF568Q3ZCX4 644 aa12.29□□□□□ -0.44
USP53-201ENST00000274030 TWF2Q6IBS0 349 aaKnown RBP12.29□□□□□ -0.44
USP53-201ENST00000274030 SWSAP1Q6NVH7 229 aa12.29□□□□□ -0.44
USP53-201ENST00000274030 HIBCHQ6NVY1 386 aaPredicted RBP12.29□□□□□ -0.44
USP53-201ENST00000274030 MTRQ99707 1265 aa12.29□□□□□ -0.44
USP53-201ENST00000274030 ELAC2Q9BQ52 826 aaKnown RBP12.29□□□□□ -0.44
USP53-201ENST00000274030 EPS15L1Q9UBC2 864 aa12.29□□□□□ -0.44
USP53-201ENST00000274030 PACSIN2Q9UNF0 486 aaPredicted RBP12.29□□□□□ -0.44
USP53-201ENST00000274030 SETD1BQ9UPS6 1966 aaKnown RBP12.29□□□□□ -0.44
USP53-201ENST00000274030 ESYT3A0FGR9 886 aa12.29□□□□□ -0.44
USP53-201ENST00000274030 TDP2O95551 362 aa12.29□□□□□ -0.44
USP53-201ENST00000274030 GPSM2P81274 684 aa12.29□□□□□ -0.44
USP53-201ENST00000274030 OCRLQ01968 901 aa12.29□□□□□ -0.44
USP53-201ENST00000274030 ART3Q13508 389 aa12.29□□□□□ -0.44
USP53-201ENST00000274030 ARL13BQ3SXY8 428 aa12.29□□□□□ -0.44
USP53-201ENST00000274030 CYFIP1Q7L576 1253 aa12.29□□□□□ -0.44
USP53-201ENST00000274030 RHPN2Q8IUC4 686 aa12.29□□□□□ -0.44
USP53-201ENST00000274030 RAD54LQ92698 747 aa12.29□□□□□ -0.44
USP53-201ENST00000274030 LMCD1Q9NZU5 365 aa12.29□□□□□ -0.44
USP53-201ENST00000274030 EVI5O60447 810 aa12.29□□□□□ -0.44
USP53-201ENST00000274030 ZRANB2O95218 330 aaKnown RBP eCLIP12.29□□□□□ -0.44
USP53-201ENST00000274030 SCARF1Q14162 830 aa12.29□□□□□ -0.44
USP53-201ENST00000274030 SURF1Q15526 300 aa12.29□□□□□ -0.44
USP53-201ENST00000274030 FAM47EQ6ZV65 393 aa12.29□□□□□ -0.44
USP53-201ENST00000274030 RHOT2Q8IXI1 618 aa12.29□□□□□ -0.44
USP53-201ENST00000274030 WHAMMQ8TF30 809 aa12.29□□□□□ -0.44
USP53-201ENST00000274030 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.29□□□□□ -0.44
USP53-201ENST00000274030 XAB2Q9HCS7 855 aaKnown RBP12.29□□□□□ -0.44
USP53-201ENST00000274030 A0A0G2JND7 137 aa12.29□□□□□ -0.44
USP53-201ENST00000274030 LGALS16A8MUM7 142 aa12.29□□□□□ -0.44
USP53-201ENST00000274030 TEX33O43247 280 aa12.29□□□□□ -0.44
USP53-201ENST00000274030 ZNF699Q32M78 642 aa12.29□□□□□ -0.44
USP53-201ENST00000274030 RSBN1LQ6PCB5 846 aaPredicted RBP12.29□□□□□ -0.44
USP53-201ENST00000274030 GANCQ8TET4 914 aa12.29□□□□□ -0.44
USP53-201ENST00000274030 TBRG4Q969Z0 631 aaKnown RBP eCLIP12.29□□□□□ -0.44
USP53-201ENST00000274030 EPC1Q9H2F5 836 aa12.29□□□□□ -0.44
USP53-201ENST00000274030 PIM2Q9P1W9 311 aa12.29□□□□□ -0.44
USP53-201ENST00000274030 UTYO14607 1347 aa12.28□□□□□ -0.44
USP53-201ENST00000274030 ATP8B1O43520 1251 aa12.28□□□□□ -0.44
USP53-201ENST00000274030 KCNQ2O43526 872 aa12.28□□□□□ -0.44
USP53-201ENST00000274030 PDCLQ13371 301 aa12.28□□□□□ -0.44
USP53-201ENST00000274030 EFCAB13Q8IY85 973 aa12.28□□□□□ -0.44
USP53-201ENST00000274030 PIP4K2CQ8TBX8 421 aa12.28□□□□□ -0.44
USP53-201ENST00000274030 ARHGEF1Q92888 912 aaKnown RBP12.28□□□□□ -0.44
USP53-201ENST00000274030 CYTH2Q99418 400 aa12.28□□□□□ -0.44
USP53-201ENST00000274030 SH2D3AQ9BRG2 576 aa12.28□□□□□ -0.44
USP53-201ENST00000274030 ANLNQ9NQW6 1124 aa12.28□□□□□ -0.44
USP53-201ENST00000274030 KRT82Q9NSB4 513 aa12.28□□□□□ -0.44
USP53-201ENST00000274030 RNF146Q9NTX7 359 aa12.28□□□□□ -0.44
USP53-201ENST00000274030 GABBR1Q9UBS5 961 aa12.28□□□□□ -0.44
USP53-201ENST00000274030 NARFQ9UHQ1 456 aa12.28□□□□□ -0.44
USP53-201ENST00000274030 FAF1Q9UNN5 650 aaPredicted RBP12.28□□□□□ -0.44
USP53-201ENST00000274030 F5H6K3 240 aa12.28□□□□□ -0.44
USP53-201ENST00000274030 ESRRAP11474 423 aaPredicted RBP12.28□□□□□ -0.44
USP53-201ENST00000274030 JAK3P52333 1124 aa12.28□□□□□ -0.44
USP53-201ENST00000274030 KLRC3Q07444 240 aa12.28□□□□□ -0.44
USP53-201ENST00000274030 ALCAMQ13740 583 aa12.28□□□□□ -0.44
USP53-201ENST00000274030 TRMT10CQ7L0Y3 403 aaKnown RBP12.28□□□□□ -0.44
USP53-201ENST00000274030 CCHCR1Q8TD31 782 aa12.28□□□□□ -0.44
USP53-201ENST00000274030 TTC1Q99614 292 aa12.28□□□□□ -0.44
USP53-201ENST00000274030 KLHL8Q9P2G9 620 aaPredicted RBP12.28□□□□□ -0.44
USP53-201ENST00000274030 TJP3O95049 919 aa12.28□□□□□ -0.44
USP53-201ENST00000274030 YWHAHQ04917 246 aaPredicted RBP12.28□□□□□ -0.44
USP53-201ENST00000274030 MB21D2Q8IYB1 491 aaPredicted RBP12.28□□□□□ -0.44
USP53-201ENST00000274030 SCINQ9Y6U3 715 aa12.28□□□□□ -0.44
USP53-201ENST00000274030 CREB3O43889 395 aa12.28□□□□□ -0.44
USP53-201ENST00000274030 QRICH1Q2TAL8 776 aa12.28□□□□□ -0.44
USP53-201ENST00000274030 LARP7Q4G0J3 582 aaKnown RBP eCLIP12.28□□□□□ -0.44
USP53-201ENST00000274030 PPP1R2P3Q6NXS1 205 aa12.28□□□□□ -0.44
USP53-201ENST00000274030 ADGRF4Q8IZF3 695 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms