RNA–Protein interactions for RNA: ENST00000263708.6

PTPN4-201, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPN4, Length 10,300 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-201ENST00000263708 GUCY2CP25092 1073 aa12.15□□□□□ -0.47
PTPN4-201ENST00000263708 NME3Q13232 169 aa12.15□□□□□ -0.47
PTPN4-201ENST00000263708 ERICH1Q86X53 443 aa12.15□□□□□ -0.47
PTPN4-201ENST00000263708 TMEM206Q9H813 350 aa12.15□□□□□ -0.47
PTPN4-201ENST00000263708 TRPC7Q9HCX4 862 aa12.15□□□□□ -0.47
PTPN4-201ENST00000263708 MRPL40Q9NQ50 206 aaKnown RBP12.15□□□□□ -0.47
PTPN4-201ENST00000263708 POLR3EQ9NVU0 708 aa12.15□□□□□ -0.47
PTPN4-201ENST00000263708 AIPL1Q9NZN9 384 aa12.15□□□□□ -0.47
PTPN4-201ENST00000263708 LZTS1Q9Y250 596 aa12.15□□□□□ -0.47
PTPN4-201ENST00000263708 RPS8P62241 208 aaKnown RBP12.14□□□□□ -0.47
PTPN4-201ENST00000263708 KRT17Q04695 432 aa12.14□□□□□ -0.47
PTPN4-201ENST00000263708 PASD1Q8IV76 773 aa12.14□□□□□ -0.47
PTPN4-201ENST00000263708 TBC1D19Q8N5T2 526 aa12.14□□□□□ -0.47
PTPN4-201ENST00000263708 APPL2Q8NEU8 664 aa12.14□□□□□ -0.47
PTPN4-201ENST00000263708 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.14□□□□□ -0.47
PTPN4-201ENST00000263708 AMNQ9BXJ7 453 aa12.14□□□□□ -0.47
PTPN4-201ENST00000263708 ARHGAP26Q9UNA1 814 aa12.14□□□□□ -0.47
PTPN4-201ENST00000263708 LRRC8AQ8IWT6 810 aa12.14□□□□□ -0.47
PTPN4-201ENST00000263708 SUCLG2Q96I99 432 aa12.14□□□□□ -0.47
PTPN4-201ENST00000263708 ASMTLO95671 621 aa12.14□□□□□ -0.47
PTPN4-201ENST00000263708 C8orf34Q49A92 452 aa12.14□□□□□ -0.47
PTPN4-201ENST00000263708 ARHGAP18Q8N392 663 aa12.14□□□□□ -0.47
PTPN4-201ENST00000263708 HOXC9P31274 260 aa12.14□□□□□ -0.47
PTPN4-201ENST00000263708 SERPINB10P48595 397 aa12.14□□□□□ -0.47
PTPN4-201ENST00000263708 SYTL3Q4VX76 610 aa12.14□□□□□ -0.47
PTPN4-201ENST00000263708 FGD2Q7Z6J4 655 aa12.14□□□□□ -0.47
PTPN4-201ENST00000263708 SLC35F6Q8N357 371 aa12.14□□□□□ -0.47
PTPN4-201ENST00000263708 SAYSD1Q9NPB0 183 aa12.14□□□□□ -0.47
PTPN4-201ENST00000263708 SEC31AO94979 1220 aaKnown RBP12.14□□□□□ -0.47
PTPN4-201ENST00000263708 TWF2Q6IBS0 349 aaKnown RBP12.14□□□□□ -0.47
PTPN4-201ENST00000263708 DCUN1D1Q96GG9 259 aa12.14□□□□□ -0.47
PTPN4-201ENST00000263708 RIMS2Q9UQ26 1411 aa12.14□□□□□ -0.47
PTPN4-201ENST00000263708 C16orf62Q7Z3J2 963 aa12.14□□□□□ -0.47
PTPN4-201ENST00000263708 SMYD4Q8IYR2 804 aaPredicted RBP12.14□□□□□ -0.47
PTPN4-201ENST00000263708 IFNL3Q8IZI9 196 aa12.14□□□□□ -0.47
PTPN4-201ENST00000263708 OTUD7AQ8TE49 926 aaPredicted RBP12.14□□□□□ -0.47
PTPN4-201ENST00000263708 KPNA7A9QM74 516 aa12.14□□□□□ -0.47
PTPN4-201ENST00000263708 KCNA2P16389 499 aa12.14□□□□□ -0.47
PTPN4-201ENST00000263708 NDUFA8P51970 172 aa12.14□□□□□ -0.47
PTPN4-201ENST00000263708 MFSD4BQ5TF39 518 aa12.14□□□□□ -0.47
PTPN4-201ENST00000263708 IPO5O00410 1097 aaKnown RBP12.14□□□□□ -0.47
PTPN4-201ENST00000263708 BTNL9Q6UXG8 535 aa12.14□□□□□ -0.47
PTPN4-201ENST00000263708 SPATA1Q5VX52 437 aa12.14□□□□□ -0.47
PTPN4-201ENST00000263708 IREB2P48200 963 aaKnown RBP12.13□□□□□ -0.47
PTPN4-201ENST00000263708 SLC27A3Q5K4L6 730 aa12.13□□□□□ -0.47
PTPN4-201ENST00000263708 NUDT18Q6ZVK8 323 aa12.13□□□□□ -0.47
PTPN4-201ENST00000263708 ADCK1Q86TW2 530 aa12.13□□□□□ -0.47
PTPN4-201ENST00000263708 FANCBQ8NB91 859 aa12.13□□□□□ -0.47
PTPN4-201ENST00000263708 SMARCAD1Q9H4L7 1026 aa12.13□□□□□ -0.47
PTPN4-201ENST00000263708 ZFP69BQ9UJL9 534 aa12.13□□□□□ -0.47
PTPN4-201ENST00000263708 RRP15Q9Y3B9 282 aaKnown RBP12.13□□□□□ -0.47
PTPN4-201ENST00000263708 NDUFB5O43674 189 aa12.13□□□□□ -0.47
PTPN4-201ENST00000263708 TNKSO95271 1327 aa12.13□□□□□ -0.47
PTPN4-201ENST00000263708 GOLGA8IPA6NC78 632 aa12.13□□□□□ -0.47
PTPN4-201ENST00000263708 GOLGA8JA6NMD2 632 aa12.13□□□□□ -0.47
PTPN4-201ENST00000263708 WDR75Q8IWA0 830 aaKnown RBP12.13□□□□□ -0.47
PTPN4-201ENST00000263708 AGR3Q8TD06 166 aa12.13□□□□□ -0.47
PTPN4-201ENST00000263708 TNNQ9UQP3 1299 aa12.13□□□□□ -0.47
PTPN4-201ENST00000263708 FANCAO15360 1455 aa12.13□□□□□ -0.47
PTPN4-201ENST00000263708 GOLGA8RI6L899 631 aa12.13□□□□□ -0.47
PTPN4-201ENST00000263708 MEFVO15553 781 aaPredicted RBP12.13□□□□□ -0.47
PTPN4-201ENST00000263708 SUPT3HO75486 399 aa12.13□□□□□ -0.47
PTPN4-201ENST00000263708 SLC16A2P36021 539 aa12.13□□□□□ -0.47
PTPN4-201ENST00000263708 GTF2H3Q13889 308 aa12.13□□□□□ -0.47
PTPN4-201ENST00000263708 CATSPER4Q7RTX7 472 aa12.13□□□□□ -0.47
PTPN4-201ENST00000263708 PLD3Q8IV08 490 aa12.13□□□□□ -0.47
PTPN4-201ENST00000263708 PBKQ96KB5 322 aa12.13□□□□□ -0.47
PTPN4-201ENST00000263708 NNTQ13423 1086 aa12.13□□□□□ -0.47
PTPN4-201ENST00000263708 KRT77Q7Z794 578 aa12.13□□□□□ -0.47
PTPN4-201ENST00000263708 DSCC1Q9BVC3 393 aa12.13□□□□□ -0.47
PTPN4-201ENST00000263708 AURKCQ9UQB9 309 aa12.13□□□□□ -0.47
PTPN4-201ENST00000263708 FOSP01100 380 aaPredicted RBP12.13□□□□□ -0.47
PTPN4-201ENST00000263708 SPARCL1Q14515 664 aa12.13□□□□□ -0.47
PTPN4-201ENST00000263708 ME3Q16798 604 aa12.13□□□□□ -0.47
PTPN4-201ENST00000263708 E4F1Q66K89 784 aaPredicted RBP12.13□□□□□ -0.47
PTPN4-201ENST00000263708 CC2D1AQ6P1N0 951 aaPredicted RBP12.13□□□□□ -0.47
PTPN4-201ENST00000263708 LRRC8BQ6P9F7 803 aa12.13□□□□□ -0.47
PTPN4-201ENST00000263708 ACTR5Q9H9F9 607 aaPredicted RBP12.13□□□□□ -0.47
PTPN4-201ENST00000263708 NOVA2Q9UNW9 492 aaKnown RBP12.13□□□□□ -0.47
PTPN4-201ENST00000263708 H0Y626 953 aa12.13□□□□□ -0.47
PTPN4-201ENST00000263708 TRIM16O95361 564 aa12.13□□□□□ -0.47
PTPN4-201ENST00000263708 NCALDP61601 193 aa12.13□□□□□ -0.47
PTPN4-201ENST00000263708 ADCK5Q3MIX3 580 aa12.13□□□□□ -0.47
PTPN4-201ENST00000263708 G2E3Q7L622 706 aa12.13□□□□□ -0.47
PTPN4-201ENST00000263708 SLC52A2Q9HAB3 445 aa12.13□□□□□ -0.47
PTPN4-201ENST00000263708 H2AFY2Q9P0M6 372 aaPredicted RBP12.13□□□□□ -0.47
PTPN4-201ENST00000263708 RBL2Q08999 1139 aa12.13□□□□□ -0.47
PTPN4-201ENST00000263708 SURF1Q15526 300 aa12.13□□□□□ -0.47
PTPN4-201ENST00000263708 TEDDM1Q5T9Z0 273 aa12.13□□□□□ -0.47
PTPN4-201ENST00000263708 EPM2AIP1Q7L775 607 aaPredicted RBP12.13□□□□□ -0.47
PTPN4-201ENST00000263708 HDDC2Q7Z4H3 204 aa12.13□□□□□ -0.47
PTPN4-201ENST00000263708 ATXN7L3BQ96GX2 97 aa12.13□□□□□ -0.47
PTPN4-201ENST00000263708 CAPN10Q9HC96 672 aa12.13□□□□□ -0.47
PTPN4-201ENST00000263708 DENND4BO75064 1496 aaPredicted RBP12.12□□□□□ -0.47
PTPN4-201ENST00000263708 GNAT1P11488 350 aa12.12□□□□□ -0.47
PTPN4-201ENST00000263708 AP2B1P63010 937 aa12.12□□□□□ -0.47
PTPN4-201ENST00000263708 PPP1R13BQ96KQ4 1090 aa12.12□□□□□ -0.47
PTPN4-201ENST00000263708 TMEM245Q9H330 911 aa12.12□□□□□ -0.47
PTPN4-201ENST00000263708 C14orf93Q9H972 538 aaKnown RBP12.12□□□□□ -0.47
PTPN4-201ENST00000263708 KRT37O76014 449 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms