RNA–Protein interactions for RNA: ENST00000263187.3

MSH4-201, Transcript of mutS homolog 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH4, Length 3,266 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4-201ENST00000263187 SLC35C1Q96A29 364 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 ARHGEF26Q96DR7 871 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 NUCKS1Q9H1E3 243 aaKnown RBP9.94□□□□□ -0.82
MSH4-201ENST00000263187 MYH7BA7E2Y1 1941 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 ASTN1O14525 1302 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 PHF20L1A8MW92 1017 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 PPP1R37O75864 691 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 FLOT1O75955 427 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 FAM13AO94988 1023 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 KRT13P13646 458 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 SMARCA1P28370 1054 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 SLCO1A2P46721 670 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 MAGOHP61326 146 aaKnown RBP9.94□□□□□ -0.82
MSH4-201ENST00000263187 EPHA7Q15375 998 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 PTGISQ16647 500 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 QPCTQ16769 361 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 CBWD6Q4V339 395 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 GLE1Q53GS7 698 aaKnown RBP9.94□□□□□ -0.82
MSH4-201ENST00000263187 CBWD3Q5JTY5 395 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 CBWD5Q5RIA9 395 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 CPNE8Q86YQ8 564 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 LNX1Q8TBB1 728 aaPredicted RBP9.94□□□□□ -0.82
MSH4-201ENST00000263187 SLC35G2Q8TBE7 412 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 MAGOHBQ96A72 148 aaKnown RBP9.94□□□□□ -0.82
MSH4-201ENST00000263187 HOOK2Q96ED9 719 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 DYDC2Q96IM9 177 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 FAM84AQ96KN4 292 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 EIF2AK1Q9BQI3 630 aaKnown RBP9.94□□□□□ -0.82
MSH4-201ENST00000263187 CNOT8Q9UFF9 292 aaKnown RBP9.94□□□□□ -0.82
MSH4-201ENST00000263187 RABGAP1Q9Y3P9 1069 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 ABCB11O95342 1321 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 UBR3Q6ZT12 1888 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 MDH1P40925 334 aaKnown RBP9.94□□□□□ -0.82
MSH4-201ENST00000263187 SPIRE1Q08AE8 756 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 ZNF844Q08AG5 666 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 DRAP1Q14919 205 aaPredicted RBP9.94□□□□□ -0.82
MSH4-201ENST00000263187 FAM186BQ8IYM0 893 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 LRRC57Q8N9N7 239 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 ETNPPLQ8TBG4 499 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 TEKT1Q969V4 418 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 EDEM3Q9BZQ6 932 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 CCDC113Q9H0I3 377 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 SNX24Q9Y343 169 aa9.94□□□□□ -0.82
MSH4-201ENST00000263187 HGSO14964 777 aaPredicted RBP9.93□□□□□ -0.82
MSH4-201ENST00000263187 CALUO43852 315 aaPredicted RBP9.93□□□□□ -0.82
MSH4-201ENST00000263187 GH2P01242 217 aa9.93□□□□□ -0.82
MSH4-201ENST00000263187 CALCAP01258 141 aa9.93□□□□□ -0.82
MSH4-201ENST00000263187 GCFC2P16383 781 aaKnown RBP9.93□□□□□ -0.82
MSH4-201ENST00000263187 HNRNPH1P31943 449 aaKnown RBP9.93□□□□□ -0.82
MSH4-201ENST00000263187 ECE1P42892 770 aa9.93□□□□□ -0.82
MSH4-201ENST00000263187 PLTPP55058 493 aa9.93□□□□□ -0.82
MSH4-201ENST00000263187 SPRED3Q2MJR0 410 aa9.93□□□□□ -0.82
MSH4-201ENST00000263187 FBXO11Q86XK2 927 aa9.93□□□□□ -0.82
MSH4-201ENST00000263187 ZSWIM2Q8NEG5 633 aa9.93□□□□□ -0.82
MSH4-201ENST00000263187 ERMNQ8TAM6 284 aa9.93□□□□□ -0.82
MSH4-201ENST00000263187 MYCBPAPQ8TBZ2 947 aa9.93□□□□□ -0.82
MSH4-201ENST00000263187 SLC20A1Q8WUM9 679 aa9.93□□□□□ -0.82
MSH4-201ENST00000263187 SYN2Q92777 582 aaPredicted RBP9.93□□□□□ -0.82
MSH4-201ENST00000263187 FAM163AQ96GL9 167 aaPredicted RBP9.93□□□□□ -0.82
MSH4-201ENST00000263187 BTBD6Q96KE9 485 aa9.93□□□□□ -0.82
MSH4-201ENST00000263187 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.93□□□□□ -0.82
MSH4-201ENST00000263187 THAP2Q9H0W7 228 aa9.93□□□□□ -0.82
MSH4-201ENST00000263187 EPN3Q9H201 632 aa9.93□□□□□ -0.82
MSH4-201ENST00000263187 ERVK-5Q9HDB9 667 aa9.93□□□□□ -0.82
MSH4-201ENST00000263187 SIX2Q9NPC8 291 aa9.93□□□□□ -0.82
MSH4-201ENST00000263187 DNAJC12Q9UKB3 198 aa9.93□□□□□ -0.82
MSH4-201ENST00000263187 PTPN22Q9Y2R2 807 aa9.93□□□□□ -0.82
MSH4-201ENST00000263187 SMCHD1A6NHR9 2005 aa9.93□□□□□ -0.82
MSH4-201ENST00000263187 hCG_1984214I3L0E3 225 aa9.93□□□□□ -0.82
MSH4-201ENST00000263187 TGFB1I1O43294 461 aa9.93□□□□□ -0.82
MSH4-201ENST00000263187 BBOX1O75936 387 aa9.93□□□□□ -0.82
MSH4-201ENST00000263187 NDUFB10O96000 172 aa9.93□□□□□ -0.82
MSH4-201ENST00000263187 SHBGP04278 402 aa9.93□□□□□ -0.82
MSH4-201ENST00000263187 CRKP46108 304 aa9.93□□□□□ -0.82
MSH4-201ENST00000263187 MARCKSL1P49006 195 aa9.93□□□□□ -0.82
MSH4-201ENST00000263187 ITGB3BPQ13352 177 aaPredicted RBP9.93□□□□□ -0.82
MSH4-201ENST00000263187 DPY19L2P1Q6NXN4 242 aa9.93□□□□□ -0.82
MSH4-201ENST00000263187 SIAH1Q8IUQ4 282 aa9.93□□□□□ -0.82
MSH4-201ENST00000263187 ZNF713Q8N859 430 aaPredicted RBP9.93□□□□□ -0.82
MSH4-201ENST00000263187 LENG9Q96B70 501 aa9.93□□□□□ -0.82
MSH4-201ENST00000263187 ISCUQ9H1K1 167 aa9.93□□□□□ -0.82
MSH4-201ENST00000263187 TDRD3Q9H7E2 651 aaKnown RBP9.93□□□□□ -0.82
MSH4-201ENST00000263187 TMEM150BA6NC51 233 aa9.92□□□□□ -0.82
MSH4-201ENST00000263187 SKOR1P84550 965 aa9.92□□□□□ -0.82
MSH4-201ENST00000263187 ORC2Q13416 577 aaPredicted RBP9.92□□□□□ -0.82
MSH4-201ENST00000263187 KCNV1Q6PIU1 500 aa9.92□□□□□ -0.82
MSH4-201ENST00000263187 KDM7AQ6ZMT4 941 aa9.92□□□□□ -0.82
MSH4-201ENST00000263187 SH3BP5LQ7L8J4 393 aa9.92□□□□□ -0.82
MSH4-201ENST00000263187 SYCP3Q8IZU3 236 aa9.92□□□□□ -0.82
MSH4-201ENST00000263187 SYT2Q8N9I0 419 aaPredicted RBP9.92□□□□□ -0.82
MSH4-201ENST00000263187 WHAMMQ8TF30 809 aa9.92□□□□□ -0.82
MSH4-201ENST00000263187 AMNQ9BXJ7 453 aa9.92□□□□□ -0.82
MSH4-201ENST00000263187 FOXO6A8MYZ6 492 aa9.92□□□□□ -0.82
MSH4-201ENST00000263187 RPA1P27694 616 aa9.92□□□□□ -0.82
MSH4-201ENST00000263187 STAT1P42224 750 aa9.92□□□□□ -0.82
MSH4-201ENST00000263187 NOVP48745 357 aa9.92□□□□□ -0.82
MSH4-201ENST00000263187 DLG4P78352 724 aa9.92□□□□□ -0.82
MSH4-201ENST00000263187 SF3B2Q13435 895 aaKnown RBP9.92□□□□□ -0.82
MSH4-201ENST00000263187 RINT1Q6NUQ1 792 aa9.92□□□□□ -0.82
MSH4-201ENST00000263187 VPS36Q86VN1 386 aa9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms