RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 PHLDB2Q86SQ0 1253 aa23.23■■□□□ 1.31
TRIM28-201ENST00000253024 SIX2Q9NPC8 291 aa23.23■■□□□ 1.31
TRIM28-201ENST00000253024 DNAJC12Q9UKB3 198 aa23.23■■□□□ 1.31
TRIM28-201ENST00000253024 ATP2C2O75185 946 aa23.23■■□□□ 1.31
TRIM28-201ENST00000253024 H2AFZP0C0S5 128 aa23.23■■□□□ 1.31
TRIM28-201ENST00000253024 IBSPP21815 317 aaPredicted RBP23.23■■□□□ 1.31
TRIM28-201ENST00000253024 HHIPL2Q6UWX4 724 aa23.23■■□□□ 1.31
TRIM28-201ENST00000253024 H2AFVQ71UI9 128 aa23.23■■□□□ 1.31
TRIM28-201ENST00000253024 CPNE8Q86YQ8 564 aa23.23■■□□□ 1.31
TRIM28-201ENST00000253024 DHX37Q8IY37 1157 aaKnown RBP23.23■■□□□ 1.31
TRIM28-201ENST00000253024 CPXCR1Q8N123 301 aa23.23■■□□□ 1.31
TRIM28-201ENST00000253024 MSL3Q8N5Y2 521 aaKnown RBP23.23■■□□□ 1.31
TRIM28-201ENST00000253024 TPCN2Q8NHX9 752 aa23.23■■□□□ 1.31
TRIM28-201ENST00000253024 LNX1Q8TBB1 728 aaPredicted RBP23.23■■□□□ 1.31
TRIM28-201ENST00000253024 VAV3Q9UKW4 847 aa23.23■■□□□ 1.31
TRIM28-201ENST00000253024 EBAG9O00559 213 aa23.22■■□□□ 1.31
TRIM28-201ENST00000253024 RAD17O75943 681 aa23.22■■□□□ 1.31
TRIM28-201ENST00000253024 SLITRK3O94933 977 aa23.22■■□□□ 1.31
TRIM28-201ENST00000253024 FGGP02679 453 aa23.22■■□□□ 1.31
TRIM28-201ENST00000253024 NT5C2P49902 561 aa23.22■■□□□ 1.31
TRIM28-201ENST00000253024 ARHGEF26Q96DR7 871 aa23.22■■□□□ 1.31
TRIM28-201ENST00000253024 PPP1R9AQ9ULJ8 1098 aa23.22■■□□□ 1.31
TRIM28-201ENST00000253024 GOLGA8IPA6NC78 632 aa23.22■■□□□ 1.31
TRIM28-201ENST00000253024 GOLGA8JA6NMD2 632 aa23.22■■□□□ 1.31
TRIM28-201ENST00000253024 DCDC2CA8MYV0 355 aa23.22■■□□□ 1.31
TRIM28-201ENST00000253024 GAS7O60861 476 aa23.22■■□□□ 1.31
TRIM28-201ENST00000253024 TNNC1P63316 161 aa23.22■■□□□ 1.31
TRIM28-201ENST00000253024 FAM178BQ8IXR5 827 aa23.22■■□□□ 1.31
TRIM28-201ENST00000253024 PLCD3Q8N3E9 789 aa23.22■■□□□ 1.31
TRIM28-201ENST00000253024 GLG1Q92896 1179 aa23.22■■□□□ 1.31
TRIM28-201ENST00000253024 NUCKS1Q9H1E3 243 aaKnown RBP23.22■■□□□ 1.31
TRIM28-201ENST00000253024 QTRT2Q9H974 415 aaKnown RBP23.22■■□□□ 1.31
TRIM28-201ENST00000253024 GDF3Q9NR23 364 aa23.22■■□□□ 1.31
TRIM28-201ENST00000253024 FAM169AQ9Y6X4 670 aa23.22■■□□□ 1.31
TRIM28-201ENST00000253024 EIF3HO15372 352 aaKnown RBP eCLIP23.22■■□□□ 1.312e-12■■□□□ 11.9
TRIM28-201ENST00000253024 BUB1BO60566 1050 aaPredicted RBP23.22■■□□□ 1.31
TRIM28-201ENST00000253024 EDRF1Q3B7T1 1238 aa23.22■■□□□ 1.31
TRIM28-201ENST00000253024 SLC20A1Q8WUM9 679 aa23.22■■□□□ 1.31
TRIM28-201ENST00000253024 XPO5Q9HAV4 1204 aaKnown RBP eCLIP23.22■■□□□ 1.31
TRIM28-201ENST00000253024 TYW1Q9NV66 732 aaKnown RBP23.22■■□□□ 1.31
TRIM28-201ENST00000253024 GOLGA8KD6RF30 607 aa23.21■■□□□ 1.31
TRIM28-201ENST00000253024 FLOT1O75955 427 aa23.21■■□□□ 1.31
TRIM28-201ENST00000253024 DPY19L2P1Q6NXN4 242 aa23.21■■□□□ 1.31
TRIM28-201ENST00000253024 KAT5Q92993 513 aa23.21■■□□□ 1.31
TRIM28-201ENST00000253024 SHTN1A0MZ66 631 aa23.21■■□□□ 1.31
TRIM28-201ENST00000253024 EXOC3O60645 756 aa23.21■■□□□ 1.31
TRIM28-201ENST00000253024 CTNNA1P35221 906 aaKnown RBP23.21■■□□□ 1.31
TRIM28-201ENST00000253024 FBXW10Q5XX13 1052 aa23.21■■□□□ 1.31
TRIM28-201ENST00000253024 DCAF4Q8WV16 495 aa23.21■■□□□ 1.31
TRIM28-201ENST00000253024 ZDHHC15Q96MV8 337 aa23.21■■□□□ 1.31
TRIM28-201ENST00000253024 NPR1P16066 1061 aa23.2■■□□□ 1.3
TRIM28-201ENST00000253024 SREBF1P36956 1147 aa23.2■■□□□ 1.3
TRIM28-201ENST00000253024 TMEM179Q6ZVK1 233 aa23.2■■□□□ 1.3
TRIM28-201ENST00000253024 FRMD5Q7Z6J6 570 aa23.2■■□□□ 1.3
TRIM28-201ENST00000253024 SLC35G2Q8TBE7 412 aa23.2■■□□□ 1.3
TRIM28-201ENST00000253024 EDEM3Q9BZQ6 932 aa23.2■■□□□ 1.3
TRIM28-201ENST00000253024 THAP2Q9H0W7 228 aa23.2■■□□□ 1.3
TRIM28-201ENST00000253024 NYAP2Q9P242 653 aa23.2■■□□□ 1.3
TRIM28-201ENST00000253024 STAT1P42224 750 aa23.2■■□□□ 1.3
TRIM28-201ENST00000253024 FBXL5Q9UKA1 691 aa23.2■■□□□ 1.3
TRIM28-201ENST00000253024 TRAF3IP3Q9Y228 551 aa23.2■■□□□ 1.3
TRIM28-201ENST00000253024 FRMD3A2A2Y4 597 aa23.19■■□□□ 1.3
TRIM28-201ENST00000253024 NR1D1P20393 614 aa23.19■■□□□ 1.3
TRIM28-201ENST00000253024 HSD17B3P37058 310 aa23.19■■□□□ 1.3
TRIM28-201ENST00000253024 BTBD6Q96KE9 485 aa23.19■■□□□ 1.3
TRIM28-201ENST00000253024 MYO3BQ8WXR4 1341 aa23.19■■□□□ 1.3
TRIM28-201ENST00000253024 ARFGEF1Q9Y6D6 1849 aa23.19■■□□□ 1.3
TRIM28-201ENST00000253024 PDXKO00764 312 aa23.19■■□□□ 1.3
TRIM28-201ENST00000253024 GCLMP48507 274 aa23.19■■□□□ 1.3
TRIM28-201ENST00000253024 NBPF9Q3BBW0 867 aa23.19■■□□□ 1.3
TRIM28-201ENST00000253024 DACT2Q5SW24 774 aa23.19■■□□□ 1.3
TRIM28-201ENST00000253024 RNF187Q5TA31 235 aaPredicted RBP23.19■■□□□ 1.3
TRIM28-201ENST00000253024 IQCKQ8N0W5 287 aa23.19■■□□□ 1.3
TRIM28-201ENST00000253024 SYN2Q92777 582 aaPredicted RBP23.19■■□□□ 1.3
TRIM28-201ENST00000253024 SH3GL2Q99962 352 aa23.19■■□□□ 1.3
TRIM28-201ENST00000253024 TSKSQ9UJT2 592 aa23.19■■□□□ 1.3
TRIM28-201ENST00000253024 ATP8A1Q9Y2Q0 1164 aa23.19■■□□□ 1.3
TRIM28-201ENST00000253024 TLDC2A0PJX2 215 aa23.19■■□□□ 1.3
TRIM28-201ENST00000253024 RPL13P26373 211 aaKnown RBP23.19■■□□□ 1.3
TRIM28-201ENST00000253024 STAT2P52630 851 aa23.19■■□□□ 1.3
TRIM28-201ENST00000253024 AP3B2Q13367 1082 aa23.19■■□□□ 1.3
TRIM28-201ENST00000253024 ZNF572Q7Z3I7 529 aaPredicted RBP23.19■■□□□ 1.3
TRIM28-201ENST00000253024 E7EVH7 732 aa23.18■■□□□ 1.3
TRIM28-201ENST00000253024 PGRMC1O00264 195 aaKnown RBP23.18■■□□□ 1.3
TRIM28-201ENST00000253024 CLSTN1O94985 981 aa23.18■■□□□ 1.3
TRIM28-201ENST00000253024 KRT13P13646 458 aa23.18■■□□□ 1.3
TRIM28-201ENST00000253024 MARCKSL1P49006 195 aa23.18■■□□□ 1.3
TRIM28-201ENST00000253024 SP4Q02446 784 aa23.18■■□□□ 1.3
TRIM28-201ENST00000253024 UBAP2Q5T6F2 1119 aaKnown RBP23.18■■□□□ 1.3
TRIM28-201ENST00000253024 EPM2AIP1Q7L775 607 aaPredicted RBP23.18■■□□□ 1.3
TRIM28-201ENST00000253024 ZNF577Q9BSK1 485 aa23.18■■□□□ 1.3
TRIM28-201ENST00000253024 PARVGQ9HBI0 331 aa23.18■■□□□ 1.3
TRIM28-201ENST00000253024 PITPNM2Q9BZ72 1349 aa23.18■■□□□ 1.3
TRIM28-201ENST00000253024 CYP3A7-CYP3A51PA0A087WV96 503 aa23.18■■□□□ 1.3
TRIM28-201ENST00000253024 CYP3A7P24462 503 aa23.18■■□□□ 1.3
TRIM28-201ENST00000253024 OTOP1Q7RTM1 612 aa23.18■■□□□ 1.3
TRIM28-201ENST00000253024 LRRC57Q8N9N7 239 aa23.18■■□□□ 1.3
TRIM28-201ENST00000253024 CRYGNQ8WXF5 182 aa23.18■■□□□ 1.3
TRIM28-201ENST00000253024 CAVIN3Q969G5 261 aa23.18■■□□□ 1.3
TRIM28-201ENST00000253024 GPRC5CQ9NQ84 441 aa23.18■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms