RNA–Protein interactions for RNA: ENST00000252597.7

USHBP1-201, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USHBP1, Length 3,335 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-201ENST00000252597 SLC35G2Q8TBE7 412 aa13□□□□□ -0.33
USHBP1-201ENST00000252597 LMBR1Q8WVP7 490 aa13□□□□□ -0.33
USHBP1-201ENST00000252597 NUCKS1Q9H1E3 243 aaKnown RBP13□□□□□ -0.33
USHBP1-201ENST00000252597 CD209Q9NNX6 404 aa13□□□□□ -0.33
USHBP1-201ENST00000252597 SAMD15Q9P1V8 674 aa13□□□□□ -0.33
USHBP1-201ENST00000252597 L3MBTL1Q9Y468 752 aa13□□□□□ -0.33
USHBP1-201ENST00000252597 CHUKO15111 745 aa12.99□□□□□ -0.33
USHBP1-201ENST00000252597 EVI5O60447 810 aa12.99□□□□□ -0.33
USHBP1-201ENST00000252597 EXOC3O60645 756 aa12.99□□□□□ -0.33
USHBP1-201ENST00000252597 NR3C1P04150 777 aa12.99□□□□□ -0.33
USHBP1-201ENST00000252597 PON1P27169 355 aa12.99□□□□□ -0.33
USHBP1-201ENST00000252597 HNRNPH3P31942 346 aaKnown RBP12.99□□□□□ -0.33
USHBP1-201ENST00000252597 USP11P51784 963 aa12.99□□□□□ -0.33
USHBP1-201ENST00000252597 CYB5D1Q6P9G0 228 aa12.99□□□□□ -0.33
USHBP1-201ENST00000252597 AMIGO3Q86WK7 504 aa12.99□□□□□ -0.33
USHBP1-201ENST00000252597 TPCN2Q8NHX9 752 aa12.99□□□□□ -0.33
USHBP1-201ENST00000252597 RBM46Q8TBY0 533 aaKnown RBP12.99□□□□□ -0.33
USHBP1-201ENST00000252597 ZKSCAN4Q969J2 545 aaPredicted RBP12.99□□□□□ -0.33
USHBP1-201ENST00000252597 HOOK2Q96ED9 719 aa12.99□□□□□ -0.33
USHBP1-201ENST00000252597 OSBPL7Q9BZF2 842 aa12.99□□□□□ -0.33
USHBP1-201ENST00000252597 NYXQ9GZU5 481 aa12.99□□□□□ -0.33
USHBP1-201ENST00000252597 TAS2R14Q9NYV8 317 aa12.99□□□□□ -0.33
USHBP1-201ENST00000252597 TAF1P21675 1872 aa12.99□□□□□ -0.33
USHBP1-201ENST00000252597 NEBLO76041 1014 aa12.99□□□□□ -0.33
USHBP1-201ENST00000252597 GPSM2P81274 684 aa12.99□□□□□ -0.33
USHBP1-201ENST00000252597 MYO1EQ12965 1108 aa12.99□□□□□ -0.33
USHBP1-201ENST00000252597 SLC29A2Q14542 456 aa12.99□□□□□ -0.33
USHBP1-201ENST00000252597 DRAP1Q14919 205 aaPredicted RBP12.99□□□□□ -0.33
USHBP1-201ENST00000252597 TNIP1Q15025 636 aa12.99□□□□□ -0.33
USHBP1-201ENST00000252597 ASTE1Q2TB18 679 aaPredicted RBP12.99□□□□□ -0.33
USHBP1-201ENST00000252597 UBAP2Q5T6F2 1119 aaKnown RBP12.99□□□□□ -0.33
USHBP1-201ENST00000252597 PARP9Q8IXQ6 854 aa12.99□□□□□ -0.33
USHBP1-201ENST00000252597 FBXO25Q8TCJ0 367 aa12.99□□□□□ -0.33
USHBP1-201ENST00000252597 EPS8L3Q8TE67 593 aaKnown RBP12.99□□□□□ -0.33
USHBP1-201ENST00000252597 C18orf8Q96DM3 657 aa12.99□□□□□ -0.33
USHBP1-201ENST00000252597 NT5C3AQ9H0P0 336 aa12.99□□□□□ -0.33
USHBP1-201ENST00000252597 RNF14Q9UBS8 474 aa12.99□□□□□ -0.33
USHBP1-201ENST00000252597 DNAJC12Q9UKB3 198 aa12.99□□□□□ -0.33
USHBP1-201ENST00000252597 TRIM37O94972 964 aa12.98□□□□□ -0.33
USHBP1-201ENST00000252597 SSTR3P32745 418 aaPredicted RBP12.98□□□□□ -0.33
USHBP1-201ENST00000252597 C2CD6Q53TS8 623 aa12.98□□□□□ -0.33
USHBP1-201ENST00000252597 SEPT14Q6ZU15 432 aa12.98□□□□□ -0.33
USHBP1-201ENST00000252597 ANKS4BQ8N8V4 417 aa12.98□□□□□ -0.33
USHBP1-201ENST00000252597 DAGLBQ8NCG7 672 aa12.98□□□□□ -0.33
USHBP1-201ENST00000252597 MTMR4Q9NYA4 1195 aa12.98□□□□□ -0.33
USHBP1-201ENST00000252597 PJA2O43164 708 aa12.98□□□□□ -0.33
USHBP1-201ENST00000252597 PPP1R11O60927 126 aaPredicted RBP12.98□□□□□ -0.33
USHBP1-201ENST00000252597 MTM1Q13496 603 aa12.98□□□□□ -0.33
USHBP1-201ENST00000252597 QRICH1Q2TAL8 776 aa12.98□□□□□ -0.33
USHBP1-201ENST00000252597 CATSPER3Q86XQ3 398 aa12.98□□□□□ -0.33
USHBP1-201ENST00000252597 KIAA0825Q8IV33 1275 aa12.98□□□□□ -0.33
USHBP1-201ENST00000252597 FAM186BQ8IYM0 893 aa12.98□□□□□ -0.33
USHBP1-201ENST00000252597 PRPF38AQ8NAV1 312 aaKnown RBP12.98□□□□□ -0.33
USHBP1-201ENST00000252597 KCNV2Q8TDN2 545 aa12.98□□□□□ -0.33
USHBP1-201ENST00000252597 ZNF622Q969S3 477 aaKnown RBP eCLIP12.98□□□□□ -0.33
USHBP1-201ENST00000252597 CCDC127Q96BQ5 260 aa12.98□□□□□ -0.33
USHBP1-201ENST00000252597 ANO3Q9BYT9 981 aa12.98□□□□□ -0.33
USHBP1-201ENST00000252597 THAP2Q9H0W7 228 aa12.98□□□□□ -0.33
USHBP1-201ENST00000252597 DHX36Q9H2U1 1008 aaKnown RBP12.98□□□□□ -0.33
USHBP1-201ENST00000252597 GGA1Q9UJY5 639 aa12.98□□□□□ -0.33
USHBP1-201ENST00000252597 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.98□□□□□ -0.33
USHBP1-201ENST00000252597 KNOP1Q1ED39 458 aaKnown RBP12.98□□□□□ -0.33
USHBP1-201ENST00000252597 PALB2Q86YC2 1186 aa12.98□□□□□ -0.33
USHBP1-201ENST00000252597 CNPY4Q8N129 248 aa12.98□□□□□ -0.33
USHBP1-201ENST00000252597 CCDC63Q8NA47 563 aa12.98□□□□□ -0.33
USHBP1-201ENST00000252597 CCDC197Q8NCU1 140 aa12.98□□□□□ -0.33
USHBP1-201ENST00000252597 VCPKMTQ9H867 229 aa12.98□□□□□ -0.33
USHBP1-201ENST00000252597 ASIC3Q9UHC3 531 aa12.98□□□□□ -0.33
USHBP1-201ENST00000252597 CEP83Q9Y592 693 aa12.98□□□□□ -0.33
USHBP1-201ENST00000252597 ANKRD36CQ5JPF3 1778 aa12.98□□□□□ -0.33
USHBP1-201ENST00000252597 MYH3P11055 1940 aa12.97□□□□□ -0.33
USHBP1-201ENST00000252597 GOLGA8IPA6NC78 632 aa12.97□□□□□ -0.33
USHBP1-201ENST00000252597 GOLGA8JA6NMD2 632 aa12.97□□□□□ -0.33
USHBP1-201ENST00000252597 DDX3XO00571 662 aaKnown RBP eCLIP12.97□□□□□ -0.33
USHBP1-201ENST00000252597 UPP2O95045 317 aa12.97□□□□□ -0.33
USHBP1-201ENST00000252597 CALCAP01258 141 aa12.97□□□□□ -0.33
USHBP1-201ENST00000252597 MYBL1P10243 752 aa12.97□□□□□ -0.33
USHBP1-201ENST00000252597 MARCKSL1P49006 195 aa12.97□□□□□ -0.33
USHBP1-201ENST00000252597 FXR2P51116 673 aaKnown RBP eCLIP12.97□□□□□ -0.33
USHBP1-201ENST00000252597 LONRF1Q17RB8 773 aa12.97□□□□□ -0.33
USHBP1-201ENST00000252597 CCDC174Q6PII3 467 aa12.97□□□□□ -0.33
USHBP1-201ENST00000252597 ZNF662Q6ZS27 426 aa12.97□□□□□ -0.33
USHBP1-201ENST00000252597 SUGP1Q8IWZ8 645 aaKnown RBP12.97□□□□□ -0.33
USHBP1-201ENST00000252597 ERMNQ8TAM6 284 aa12.97□□□□□ -0.33
USHBP1-201ENST00000252597 IQCDQ96DY2 449 aa12.97□□□□□ -0.33
USHBP1-201ENST00000252597 PBKQ96KB5 322 aa12.97□□□□□ -0.33
USHBP1-201ENST00000252597 FAM84AQ96KN4 292 aa12.97□□□□□ -0.33
USHBP1-201ENST00000252597 SEMA4AQ9H3S1 761 aa12.97□□□□□ -0.33
USHBP1-201ENST00000252597 TPX2Q9ULW0 747 aaKnown RBP12.97□□□□□ -0.33
USHBP1-201ENST00000252597 PNMA6FA0A0J9YX94 578 aa12.97□□□□□ -0.33
USHBP1-201ENST00000252597 CALUO43852 315 aaPredicted RBP12.97□□□□□ -0.33
USHBP1-201ENST00000252597 GNA14O95837 355 aa12.97□□□□□ -0.33
USHBP1-201ENST00000252597 RPL13P26373 211 aaKnown RBP12.97□□□□□ -0.33
USHBP1-201ENST00000252597 SCTRP47872 440 aa12.97□□□□□ -0.33
USHBP1-201ENST00000252597 PSMD2Q13200 908 aa12.97□□□□□ -0.33
USHBP1-201ENST00000252597 CUL1Q13616 776 aa12.97□□□□□ -0.33
USHBP1-201ENST00000252597 CPNE8Q86YQ8 564 aa12.97□□□□□ -0.33
USHBP1-201ENST00000252597 LRRC34Q8IZ02 419 aa12.97□□□□□ -0.33
USHBP1-201ENST00000252597 PROM2Q8N271 834 aa12.97□□□□□ -0.33
USHBP1-201ENST00000252597 ARHGEF1Q92888 912 aaKnown RBP12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms