RNA–Protein interactions for RNA: ENST00000251739.9

VPS50-201, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS50, Length 1,193 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-201ENST00000251739 TMX1Q9H3N1 280 aa11.75□□□□□ -0.53
VPS50-201ENST00000251739 TMEM260Q9NX78 707 aa11.75□□□□□ -0.53
VPS50-201ENST00000251739 MRPL42Q9Y6G3 142 aaKnown RBP11.75□□□□□ -0.53
VPS50-201ENST00000251739 COL1A2P08123 1366 aa11.75□□□□□ -0.53
VPS50-201ENST00000251739 WDFY4Q6ZS81 3184 aa11.75□□□□□ -0.53
VPS50-201ENST00000251739 NCK2O43639 380 aa11.74□□□□□ -0.53
VPS50-201ENST00000251739 CDC45O75419 566 aa11.74□□□□□ -0.53
VPS50-201ENST00000251739 ATP4AP20648 1035 aa11.74□□□□□ -0.53
VPS50-201ENST00000251739 TMEM62Q0P6H9 643 aa11.74□□□□□ -0.53
VPS50-201ENST00000251739 BTG3Q14201 252 aaPredicted RBP11.74□□□□□ -0.53
VPS50-201ENST00000251739 KRT32Q14532 448 aa11.74□□□□□ -0.53
VPS50-201ENST00000251739 PFKFB3Q16875 520 aaPredicted RBP11.74□□□□□ -0.53
VPS50-201ENST00000251739 MTHFD1LQ6UB35 978 aa11.74□□□□□ -0.53
VPS50-201ENST00000251739 FBXL16Q8N461 479 aa11.74□□□□□ -0.53
VPS50-201ENST00000251739 TNPO1Q92973 898 aaKnown RBP11.74□□□□□ -0.53
VPS50-201ENST00000251739 ZMYND12Q9H0C1 365 aa11.74□□□□□ -0.53
VPS50-201ENST00000251739 PRKAG3Q9UGI9 489 aa11.74□□□□□ -0.53
VPS50-201ENST00000251739 PLAGL2Q9UPG8 496 aa11.74□□□□□ -0.53
VPS50-201ENST00000251739 FAM86C2PA6NEL3 165 aa11.73□□□□□ -0.53
VPS50-201ENST00000251739 HBP1O60381 514 aa11.73□□□□□ -0.53
VPS50-201ENST00000251739 MGEA5O60502 916 aa11.73□□□□□ -0.53
VPS50-201ENST00000251739 TBX10O75333 385 aa11.73□□□□□ -0.53
VPS50-201ENST00000251739 CACNA1HO95180 2353 aa11.73□□□□□ -0.53
VPS50-201ENST00000251739 ITGB1P05556 798 aa11.73□□□□□ -0.53
VPS50-201ENST00000251739 HMGB1P09429 215 aaKnown RBP11.73□□□□□ -0.53
VPS50-201ENST00000251739 SCG2P13521 617 aa11.73□□□□□ -0.53
VPS50-201ENST00000251739 DNAJB1P25685 340 aa11.73□□□□□ -0.53
VPS50-201ENST00000251739 ADD1P35611 737 aaKnown RBP11.73□□□□□ -0.53
VPS50-201ENST00000251739 LSM11P83369 360 aaKnown RBP eCLIP11.73□□□□□ -0.53
VPS50-201ENST00000251739 KRT76Q01546 638 aa11.73□□□□□ -0.53
VPS50-201ENST00000251739 DLX2Q07687 328 aaPredicted RBP11.73□□□□□ -0.53
VPS50-201ENST00000251739 PAK2Q13177 524 aa11.73□□□□□ -0.53
VPS50-201ENST00000251739 SMAD2Q15796 467 aaKnown RBP11.73□□□□□ -0.53
VPS50-201ENST00000251739 PKN1Q16512 942 aa11.73□□□□□ -0.53
VPS50-201ENST00000251739 NAALADL2Q58DX5 795 aa11.73□□□□□ -0.53
VPS50-201ENST00000251739 KIAA0319LQ8IZA0 1049 aa11.73□□□□□ -0.53
VPS50-201ENST00000251739 NME8Q8N427 588 aa11.73□□□□□ -0.53
VPS50-201ENST00000251739 TMEM40Q8WWA1 233 aa11.73□□□□□ -0.53
VPS50-201ENST00000251739 LENG9Q96B70 501 aa11.73□□□□□ -0.53
VPS50-201ENST00000251739 AGXT2Q9BYV1 514 aa11.73□□□□□ -0.53
VPS50-201ENST00000251739 ERVK-5Q9HDB9 667 aa11.73□□□□□ -0.53
VPS50-201ENST00000251739 CLDND1Q9NY35 253 aa11.73□□□□□ -0.53
VPS50-201ENST00000251739 M0QZ92 97 aa11.72□□□□□ -0.53
VPS50-201ENST00000251739 IPO5O00410 1097 aaKnown RBP11.72□□□□□ -0.53
VPS50-201ENST00000251739 C22orf31O95567 290 aa11.72□□□□□ -0.53
VPS50-201ENST00000251739 CPA1P15085 419 aa11.72□□□□□ -0.53
VPS50-201ENST00000251739 KLRC1P26715 233 aa11.72□□□□□ -0.53
VPS50-201ENST00000251739 GTF2F1P35269 517 aaKnown RBP eCLIP11.72□□□□□ -0.53
VPS50-201ENST00000251739 NTRK3Q16288 839 aa11.72□□□□□ -0.53
VPS50-201ENST00000251739 JAKMIP3Q5VZ66 844 aa11.72□□□□□ -0.53
VPS50-201ENST00000251739 PLA2G4DQ86XP0 818 aa11.72□□□□□ -0.53
VPS50-201ENST00000251739 ADHFE1Q8IWW8 467 aa11.72□□□□□ -0.53
VPS50-201ENST00000251739 LINC01465Q8N7H1 131 aa11.72□□□□□ -0.53
VPS50-201ENST00000251739 SPPL3Q8TCT6 385 aa11.72□□□□□ -0.53
VPS50-201ENST00000251739 FAM122AQ96E09 287 aa11.72□□□□□ -0.53
VPS50-201ENST00000251739 MSLNLQ96KJ4 702 aa11.72□□□□□ -0.53
VPS50-201ENST00000251739 ALG13Q9NP73 1137 aaKnown RBP11.72□□□□□ -0.53
VPS50-201ENST00000251739 NOC2LQ9Y3T9 749 aaKnown RBP11.72□□□□□ -0.53
VPS50-201ENST00000251739 MAFBQ9Y5Q3 323 aaPredicted RBP11.72□□□□□ -0.53
VPS50-201ENST00000251739 PRR33A8MZF0 331 aa11.71□□□□□ -0.53
VPS50-201ENST00000251739 C9IYK1 514 aa11.71□□□□□ -0.53
VPS50-201ENST00000251739 DDX39AO00148 427 aaKnown RBP11.71□□□□□ -0.53
VPS50-201ENST00000251739 MBTPS2O43462 519 aa11.71□□□□□ -0.53
VPS50-201ENST00000251739 EDIL3O43854 480 aa11.71□□□□□ -0.53
VPS50-201ENST00000251739 STAG3L1P0CL83 205 aa11.71□□□□□ -0.53
VPS50-201ENST00000251739 CIITAP33076 1130 aa11.71□□□□□ -0.53
VPS50-201ENST00000251739 SARSP49591 514 aaKnown RBP11.71□□□□□ -0.53
VPS50-201ENST00000251739 GATMP50440 423 aa11.71□□□□□ -0.53
VPS50-201ENST00000251739 METAP2P50579 478 aaKnown RBP eCLIP11.71□□□□□ -0.53
VPS50-201ENST00000251739 SETQ01105 290 aaPredicted RBP11.71□□□□□ -0.53
VPS50-201ENST00000251739 APOBRQ0VD83 1088 aa11.71□□□□□ -0.53
VPS50-201ENST00000251739 ADAM15Q13444 863 aa11.71□□□□□ -0.53
VPS50-201ENST00000251739 TMEM266Q2M3C6 531 aa11.71□□□□□ -0.53
VPS50-201ENST00000251739 ZNF484Q5JVG2 852 aa11.71□□□□□ -0.53
VPS50-201ENST00000251739 FAM160B1Q5W0V3 765 aa11.71□□□□□ -0.53
VPS50-201ENST00000251739 MCTP2Q6DN12 878 aa11.71□□□□□ -0.53
VPS50-201ENST00000251739 ZNF746Q6NUN9 644 aaPredicted RBP11.71□□□□□ -0.53
VPS50-201ENST00000251739 REXO1Q8N1G1 1221 aaKnown RBP11.71□□□□□ -0.53
VPS50-201ENST00000251739 ZNF302Q9NR11 478 aa11.71□□□□□ -0.53
VPS50-201ENST00000251739 TBC1D22BQ9NU19 505 aa11.71□□□□□ -0.53
VPS50-201ENST00000251739 FAM50BQ9Y247 325 aa11.71□□□□□ -0.53
VPS50-201ENST00000251739 HCN4Q9Y3Q4 1203 aa11.71□□□□□ -0.53
VPS50-201ENST00000251739 CCDC196A0A1B0GTZ2 297 aa11.7□□□□□ -0.54
VPS50-201ENST00000251739 TK2O00142 265 aa11.7□□□□□ -0.54
VPS50-201ENST00000251739 BACH1O14867 736 aa11.7□□□□□ -0.54
VPS50-201ENST00000251739 LINC01565O15544 149 aa11.7□□□□□ -0.54
VPS50-201ENST00000251739 PRPF3O43395 683 aaKnown RBP11.7□□□□□ -0.54
VPS50-201ENST00000251739 DCXO43602 365 aa11.7□□□□□ -0.54
VPS50-201ENST00000251739 EYA4O95677 639 aa11.7□□□□□ -0.54
VPS50-201ENST00000251739 ALADP13716 330 aa11.7□□□□□ -0.54
VPS50-201ENST00000251739 SSTR3P32745 418 aaPredicted RBP11.7□□□□□ -0.54
VPS50-201ENST00000251739 HSPA4P34932 840 aa11.7□□□□□ -0.54
VPS50-201ENST00000251739 IRS1P35568 1242 aa11.7□□□□□ -0.54
VPS50-201ENST00000251739 ZNF76P36508 570 aa11.7□□□□□ -0.54
VPS50-201ENST00000251739 PRSS12P56730 875 aa11.7□□□□□ -0.54
VPS50-201ENST00000251739 EVCP57679 992 aa11.7□□□□□ -0.54
VPS50-201ENST00000251739 SMAD4Q13485 552 aaKnown RBP11.7□□□□□ -0.54
VPS50-201ENST00000251739 DSC3Q14574 896 aa11.7□□□□□ -0.54
VPS50-201ENST00000251739 PAN2Q504Q3 1202 aaKnown RBP11.7□□□□□ -0.54
VPS50-201ENST00000251739 SWSAP1Q6NVH7 229 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms