RNA–Protein interactions for RNA: ENST00000216414.12

CDKN3-201, Transcript of cyclin dependent kinase inhibitor 3, humanhuman

TSL 1 (best)

Gene CDKN3, Length 373 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDKN3-201ENST00000216414 PCDHA9Q9Y5H5 950 aa4.35□□□□□ -1.71
CDKN3-201ENST00000216414 TRBV23-1A0A0A0MS06 115 aa4.34□□□□□ -1.71
CDKN3-201ENST00000216414 PMS2P1A4D2B8 440 aa4.34□□□□□ -1.71
CDKN3-201ENST00000216414 FOXN1O15353 648 aa4.34□□□□□ -1.71
CDKN3-201ENST00000216414 NAT1P18440 290 aa4.34□□□□□ -1.71
CDKN3-201ENST00000216414 SCNN1GP51170 649 aa4.34□□□□□ -1.71
CDKN3-201ENST00000216414 SUMO1P63165 101 aaKnown RBP4.34□□□□□ -1.71
CDKN3-201ENST00000216414 ATP2C1P98194 919 aaPredicted RBP4.34□□□□□ -1.71
CDKN3-201ENST00000216414 SLC25A3Q00325 362 aa4.34□□□□□ -1.71
CDKN3-201ENST00000216414 SAFB2Q14151 953 aaKnown RBP eCLIP4.34□□□□□ -1.71
CDKN3-201ENST00000216414 ACAP1Q15027 740 aa4.34□□□□□ -1.71
CDKN3-201ENST00000216414 SEC23AQ15436 765 aa4.34□□□□□ -1.71
CDKN3-201ENST00000216414 LAIR1Q6GTX8 287 aa4.34□□□□□ -1.71
CDKN3-201ENST00000216414 Q6ZPA2 131 aa4.34□□□□□ -1.71
CDKN3-201ENST00000216414 ZNF662Q6ZS27 426 aa4.34□□□□□ -1.71
CDKN3-201ENST00000216414 RPUSD2Q8IZ73 545 aaKnown RBP4.34□□□□□ -1.71
CDKN3-201ENST00000216414 ASB15Q8WXK1 588 aa4.34□□□□□ -1.71
CDKN3-201ENST00000216414 RABGGTAQ92696 567 aa4.34□□□□□ -1.71
CDKN3-201ENST00000216414 MIEF2Q96C03 454 aa4.34□□□□□ -1.71
CDKN3-201ENST00000216414 GBP4Q96PP9 640 aa4.34□□□□□ -1.71
CDKN3-201ENST00000216414 NRDE2Q9H7Z3 1164 aa4.34□□□□□ -1.71
CDKN3-201ENST00000216414 GPRC5BQ9NZH0 403 aa4.34□□□□□ -1.71
CDKN3-201ENST00000216414 FOXP2O15409 715 aa4.33□□□□□ -1.72
CDKN3-201ENST00000216414 MAN2A2P49641 1150 aa4.33□□□□□ -1.72
CDKN3-201ENST00000216414 MAP3K12Q12852 859 aa4.33□□□□□ -1.72
CDKN3-201ENST00000216414 FAM209AQ5JX71 171 aa4.33□□□□□ -1.72
CDKN3-201ENST00000216414 SPATC1Q76KD6 591 aa4.33□□□□□ -1.72
CDKN3-201ENST00000216414 GSPT2Q8IYD1 628 aaKnown RBP4.33□□□□□ -1.72
CDKN3-201ENST00000216414 CALML6Q8TD86 181 aa4.33□□□□□ -1.72
CDKN3-201ENST00000216414 ERCC4Q92889 916 aaPredicted RBP4.33□□□□□ -1.72
CDKN3-201ENST00000216414 TRIM55Q9BYV6 548 aa4.33□□□□□ -1.72
CDKN3-201ENST00000216414 KCNH7Q9NS40 1196 aa4.33□□□□□ -1.72
CDKN3-201ENST00000216414 GOLGA8BA8MQT2 603 aa4.32□□□□□ -1.72
CDKN3-201ENST00000216414 FAM20BO75063 409 aa4.32□□□□□ -1.72
CDKN3-201ENST00000216414 CRTAMO95727 393 aa4.32□□□□□ -1.72
CDKN3-201ENST00000216414 C6orf222P0C671 652 aaPredicted RBP4.32□□□□□ -1.72
CDKN3-201ENST00000216414 APEX1P27695 318 aaKnown RBP4.32□□□□□ -1.72
CDKN3-201ENST00000216414 PTGS2P35354 604 aa4.32□□□□□ -1.72
CDKN3-201ENST00000216414 LACTBP83111 547 aaPredicted RBP4.32□□□□□ -1.72
CDKN3-201ENST00000216414 RAB33AQ14088 237 aa4.32□□□□□ -1.72
CDKN3-201ENST00000216414 ELAVL1Q15717 326 aaKnown RBP4.32□□□□□ -1.72
CDKN3-201ENST00000216414 TM4SF20Q53R12 229 aa4.32□□□□□ -1.72
CDKN3-201ENST00000216414 LRCH2Q5VUJ6 765 aa4.32□□□□□ -1.72
CDKN3-201ENST00000216414 FSTL4Q6MZW2 842 aa4.32□□□□□ -1.72
CDKN3-201ENST00000216414 KLHDC10Q6PID8 442 aa4.32□□□□□ -1.72
CDKN3-201ENST00000216414 NOSTRINQ8IVI9 506 aa4.32□□□□□ -1.72
CDKN3-201ENST00000216414 LPPQ93052 612 aa4.32□□□□□ -1.72
CDKN3-201ENST00000216414 SLC7A6OSQ96CW6 309 aaPredicted RBP4.32□□□□□ -1.72
CDKN3-201ENST00000216414 RPL10LQ96L21 214 aaKnown RBP4.32□□□□□ -1.72
CDKN3-201ENST00000216414 PFDN2Q9UHV9 154 aa4.32□□□□□ -1.72
CDKN3-201ENST00000216414 MAGEL2Q9UJ55 1249 aa4.32□□□□□ -1.72
CDKN3-201ENST00000216414 VWA7Q9Y334 891 aa4.32□□□□□ -1.72
CDKN3-201ENST00000216414 ASB1Q9Y576 335 aa4.32□□□□□ -1.72
CDKN3-201ENST00000216414 CTDP1Q9Y5B0 961 aaPredicted RBP4.32□□□□□ -1.72
CDKN3-201ENST00000216414 RASSF10A6NK89 507 aa4.31□□□□□ -1.72
CDKN3-201ENST00000216414 H2AFYO75367 372 aaKnown RBP4.31□□□□□ -1.72
CDKN3-201ENST00000216414 GABREP78334 506 aa4.31□□□□□ -1.72
CDKN3-201ENST00000216414 COL10A1Q03692 680 aa4.31□□□□□ -1.72
CDKN3-201ENST00000216414 TOB2Q14106 344 aaPredicted RBP4.31□□□□□ -1.72
CDKN3-201ENST00000216414 TMEM132BQ14DG7 1078 aa4.31□□□□□ -1.72
CDKN3-201ENST00000216414 MTERF2Q49AM1 385 aa4.31□□□□□ -1.72
CDKN3-201ENST00000216414 GAREM2Q75VX8 874 aa4.31□□□□□ -1.72
CDKN3-201ENST00000216414 ANKRD53Q8N9V6 530 aa4.31□□□□□ -1.72
CDKN3-201ENST00000216414 HAS1Q92839 578 aa4.31□□□□□ -1.72
CDKN3-201ENST00000216414 GCDHQ92947 438 aaPredicted RBP4.31□□□□□ -1.72
CDKN3-201ENST00000216414 ZNF669Q96BR6 464 aaPredicted RBP4.31□□□□□ -1.72
CDKN3-201ENST00000216414 GPR87Q9BY21 358 aa4.31□□□□□ -1.72
CDKN3-201ENST00000216414 SLC6A15Q9H2J7 730 aa4.31□□□□□ -1.72
CDKN3-201ENST00000216414 RBM8AQ9Y5S9 174 aaKnown RBP4.31□□□□□ -1.72
CDKN3-201ENST00000216414 GOLGA6L22H0YM25 854 aa4.3□□□□□ -1.72
CDKN3-201ENST00000216414 PDPK1O15530 556 aa4.3□□□□□ -1.72
CDKN3-201ENST00000216414 ADCY3O60266 1144 aa4.3□□□□□ -1.72
CDKN3-201ENST00000216414 HIP1RO75146 1068 aa4.3□□□□□ -1.72
CDKN3-201ENST00000216414 NUDT3O95989 172 aa4.3□□□□□ -1.72
CDKN3-201ENST00000216414 APPP05067 770 aa4.3□□□□□ -1.72
CDKN3-201ENST00000216414 TCF3P15923 654 aa4.3□□□□□ -1.72
CDKN3-201ENST00000216414 ADCY7P51828 1080 aa4.3□□□□□ -1.72
CDKN3-201ENST00000216414 SESN2P58004 480 aaPredicted RBP4.3□□□□□ -1.72
CDKN3-201ENST00000216414 BPIFB4P59827 614 aa4.3□□□□□ -1.72
CDKN3-201ENST00000216414 ZC3H6P61129 1189 aaKnown RBP4.3□□□□□ -1.72
CDKN3-201ENST00000216414 SSRP1Q08945 709 aaKnown RBP4.3□□□□□ -1.72
CDKN3-201ENST00000216414 FOXB2Q5VYV0 432 aa4.3□□□□□ -1.72
CDKN3-201ENST00000216414 FAM111BQ6SJ93 734 aa4.3□□□□□ -1.72
CDKN3-201ENST00000216414 MRGPREQ86SM8 312 aa4.3□□□□□ -1.72
CDKN3-201ENST00000216414 BCL6BQ8N143 479 aaPredicted RBP4.3□□□□□ -1.72
CDKN3-201ENST00000216414 PGBD4Q96DM1 585 aa4.3□□□□□ -1.72
CDKN3-201ENST00000216414 SAE1Q9UBE0 346 aaPredicted RBP4.3□□□□□ -1.72
CDKN3-201ENST00000216414 DENND2AQ9ULE3 1009 aa4.3□□□□□ -1.72
CDKN3-201ENST00000216414 COQ6Q9Y2Z9 468 aa4.3□□□□□ -1.72
CDKN3-201ENST00000216414 POLR2AP24928 1970 aaKnown RBP4.3□□□□□ -1.72
CDKN3-201ENST00000216414 CCDC85CA6NKD9 419 aa4.29□□□□□ -1.72
CDKN3-201ENST00000216414 TRAF5O00463 557 aa4.29□□□□□ -1.72
CDKN3-201ENST00000216414 GCP02774 474 aa4.29□□□□□ -1.72
CDKN3-201ENST00000216414 SDHAP31040 664 aa4.29□□□□□ -1.72
CDKN3-201ENST00000216414 IL12RB1P42701 662 aa4.29□□□□□ -1.72
CDKN3-201ENST00000216414 TCIRG1Q13488 830 aa4.29□□□□□ -1.72
CDKN3-201ENST00000216414 CCDC142Q17RM4 750 aa4.29□□□□□ -1.72
CDKN3-201ENST00000216414 MBNL2Q5VZF2 373 aaKnown RBP4.29□□□□□ -1.72
CDKN3-201ENST00000216414 SYNE4Q8N205 404 aa4.29□□□□□ -1.72
CDKN3-201ENST00000216414 MB21D1Q8N884 522 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms