RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 AKR1B10O60218 316 aa7.4□□□□□ -1.23
SCN1A-213ENST00000636759 SNX3O60493 162 aa7.4□□□□□ -1.23
SCN1A-213ENST00000636759 CIAO1O76071 339 aa7.4□□□□□ -1.23
SCN1A-213ENST00000636759 UBTFL6P0CB48 400 aaPredicted RBP7.4□□□□□ -1.23
SCN1A-213ENST00000636759 SMARCA1P28370 1054 aa7.4□□□□□ -1.23
SCN1A-213ENST00000636759 RASSF7Q02833 373 aa7.4□□□□□ -1.23
SCN1A-213ENST00000636759 ITGA7Q13683 1181 aa7.4□□□□□ -1.23
SCN1A-213ENST00000636759 APTXQ7Z2E3 356 aaKnown RBP7.4□□□□□ -1.23
SCN1A-213ENST00000636759 SPATA24Q86W54 205 aa7.4□□□□□ -1.23
SCN1A-213ENST00000636759 KLHL7Q8IXQ5 586 aa7.4□□□□□ -1.23
SCN1A-213ENST00000636759 SLC15A3Q8IY34 581 aa7.4□□□□□ -1.23
SCN1A-213ENST00000636759 AGGF1Q8N302 714 aaeCLIP7.4□□□□□ -1.23
SCN1A-213ENST00000636759 ATP6V0A1Q93050 837 aa7.4□□□□□ -1.23
SCN1A-213ENST00000636759 BHMTQ93088 406 aa7.4□□□□□ -1.23
SCN1A-213ENST00000636759 DYDC2Q96IM9 177 aa7.4□□□□□ -1.23
SCN1A-213ENST00000636759 SLC4A9Q96Q91 983 aa7.4□□□□□ -1.23
SCN1A-213ENST00000636759 CCDC28BQ9BUN5 200 aa7.4□□□□□ -1.23
SCN1A-213ENST00000636759 IFIH1Q9BYX4 1025 aaKnown RBP7.4□□□□□ -1.23
SCN1A-213ENST00000636759 NMRK1Q9NWW6 199 aa7.4□□□□□ -1.23
SCN1A-213ENST00000636759 BTBD7Q9P203 1132 aa7.4□□□□□ -1.23
SCN1A-213ENST00000636759 TSC22D4Q9Y3Q8 395 aa7.4□□□□□ -1.23
SCN1A-213ENST00000636759 DUSP10Q9Y6W6 482 aa7.4□□□□□ -1.23
SCN1A-213ENST00000636759 WDR19Q8NEZ3 1342 aa7.4□□□□□ -1.23
SCN1A-213ENST00000636759 SBF2Q86WG5 1849 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 A0A0J9YVX5 310 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 GOLGA8AA7E2F4 631 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 ATP5J2-PTCD1G3V325 749 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 PTCD1O75127 700 aaKnown RBP7.39□□□□□ -1.23
SCN1A-213ENST00000636759 PEX11AO75192 247 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 MOCS3O95396 460 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 SHBGP04278 402 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 ZCCHC18P0CG32 403 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 CD97P48960 835 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 EIF3BP55884 814 aaKnown RBP7.39□□□□□ -1.23
SCN1A-213ENST00000636759 MDM2Q00987 491 aaPredicted RBP7.39□□□□□ -1.23
SCN1A-213ENST00000636759 LIN52Q52LA3 116 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 CDKAL1Q5VV42 579 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 GRAMD1CQ8IYS0 662 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 THAP9Q9H5L6 903 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 DCLRE1BQ9H816 532 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 LRWD1Q9UFC0 647 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 DDX25Q9UHL0 483 aaKnown RBP7.39□□□□□ -1.23
SCN1A-213ENST00000636759 FBXL5Q9UKA1 691 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 TRIM33Q9UPN9 1127 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 CTNND2Q9UQB3 1225 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 ARL2BPQ9Y2Y0 163 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 RNF225M0QZC1 329 aaPredicted RBP7.39□□□□□ -1.23
SCN1A-213ENST00000636759 ATP5HO75947 161 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 NFKBIAP25963 317 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 AFMP43652 599 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 HPCAP84074 193 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 R3HDM1Q15032 1099 aaKnown RBP7.39□□□□□ -1.23
SCN1A-213ENST00000636759 VPS37DQ86XT2 251 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 STAG2Q8N3U4 1231 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 NELFBQ8WX92 580 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 MPP4Q96JB8 637 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 ZNF333Q96JL9 665 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 AGBL1Q96MI9 1066 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 MED15Q96RN5 788 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 HAPLN3Q96S86 360 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 UBAC1Q9BSL1 405 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 NHEJ1Q9H9Q4 299 aaPredicted RBP7.39□□□□□ -1.23
SCN1A-213ENST00000636759 TMOD3Q9NYL9 352 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 SART1O43290 800 aaKnown RBP7.39□□□□□ -1.23
SCN1A-213ENST00000636759 MAP3K7O43318 606 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 PYGMP11217 842 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 RASSF2P50749 326 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 PLOD1Q02809 727 aaPredicted RBP7.39□□□□□ -1.23
SCN1A-213ENST00000636759 MECOMQ03112 1051 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 SCARF1Q14162 830 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 SEPT7Q16181 437 aaKnown RBP7.39□□□□□ -1.23
SCN1A-213ENST00000636759 LRRC24Q50LG9 513 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 HS2ST1Q7LGA3 356 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 WDR75Q8IWA0 830 aaKnown RBP7.39□□□□□ -1.23
SCN1A-213ENST00000636759 CXorf38Q8TB03 319 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 DEPTORQ8TB45 409 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 NCSTNQ92542 709 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 TAF4BQ92750 862 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 CASP10Q92851 521 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 KCNN1Q92952 543 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 PRMT1Q99873 361 aaKnown RBP7.39□□□□□ -1.23
SCN1A-213ENST00000636759 RXFP1Q9HBX9 757 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 ATP8A2Q9NTI2 1148 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 PAG1Q9NWQ8 432 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 DENND2AQ9ULE3 1009 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 ASAP1Q9ULH1 1129 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 CDK5RAP2Q96SN8 1893 aa7.39□□□□□ -1.23
SCN1A-213ENST00000636759 CCDC160A6NGH7 325 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 GOLGA8BA8MQT2 603 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 KCNJ18B7U540 433 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 O00370 1275 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 RGS16O15492 202 aaPredicted RBP7.38□□□□□ -1.23
SCN1A-213ENST00000636759 PDE5AO76074 875 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 VAV1P15498 845 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 SKIV2L2P42285 1042 aaKnown RBP7.38□□□□□ -1.23
SCN1A-213ENST00000636759 TCIRG1Q13488 830 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 KCNJ12Q14500 433 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 GSTA3Q16772 222 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 WASHC2DQ5SRD0 308 aa7.38□□□□□ -1.23
SCN1A-213ENST00000636759 NT5DC1Q5TFE4 455 aa7.38□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms