RNA–Protein interactions for RNA: ENST00000636172.1

CLN3-245, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,536 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-245ENST00000636172 F2P00734 622 aa22.92■■□□□ 1.26
CLN3-245ENST00000636172 MYL3P08590 195 aa22.92■■□□□ 1.26
CLN3-245ENST00000636172 DPYDQ12882 1025 aa22.92■■□□□ 1.26
CLN3-245ENST00000636172 MTFR1Q15390 333 aa22.92■■□□□ 1.26
CLN3-245ENST00000636172 ARSHQ5FYA8 562 aa22.92■■□□□ 1.26
CLN3-245ENST00000636172 XKR9Q5GH70 373 aa22.92■■□□□ 1.26
CLN3-245ENST00000636172 GNASQ5JWF2 1037 aa22.92■■□□□ 1.26
CLN3-245ENST00000636172 KLHDC9Q8NEP7 349 aa22.92■■□□□ 1.26
CLN3-245ENST00000636172 BBXQ8WY36 941 aaPredicted RBP22.92■■□□□ 1.26
CLN3-245ENST00000636172 KAT2BQ92831 832 aa22.92■■□□□ 1.26
CLN3-245ENST00000636172 C7orf25Q9BPX7 421 aa22.92■■□□□ 1.26
CLN3-245ENST00000636172 NIFKQ9BYG3 293 aaKnown RBP22.92■■□□□ 1.26
CLN3-245ENST00000636172 GZF1Q9H116 711 aaPredicted RBP22.92■■□□□ 1.26
CLN3-245ENST00000636172 RNPEPQ9H4A4 650 aa22.92■■□□□ 1.26
CLN3-245ENST00000636172 TUT1Q9H6E5 874 aaKnown RBP22.92■■□□□ 1.26
CLN3-245ENST00000636172 NRBP2Q9NSY0 501 aa22.92■■□□□ 1.26
CLN3-245ENST00000636172 ZNF215Q9UL58 517 aaPredicted RBP22.92■■□□□ 1.26
CLN3-245ENST00000636172 BRCA2P51587 3418 aa22.91■■□□□ 1.26
CLN3-245ENST00000636172 MYL1P05976 194 aa22.91■■□□□ 1.26
CLN3-245ENST00000636172 CST5P28325 142 aaPredicted RBP22.91■■□□□ 1.26
CLN3-245ENST00000636172 PURAQ00577 322 aaKnown RBP22.91■■□□□ 1.26
CLN3-245ENST00000636172 ZSCAN23Q3MJ62 389 aa22.91■■□□□ 1.26
CLN3-245ENST00000636172 RINT1Q6NUQ1 792 aa22.91■■□□□ 1.26
CLN3-245ENST00000636172 CEP170P1Q96L14 293 aa22.91■■□□□ 1.26
CLN3-245ENST00000636172 LRRC27Q9C0I9 530 aa22.91■■□□□ 1.26
CLN3-245ENST00000636172 PAK6Q9NQU5 681 aaPredicted RBP22.91■■□□□ 1.26
CLN3-245ENST00000636172 CYP26B1Q9NR63 512 aa22.91■■□□□ 1.26
CLN3-245ENST00000636172 MYCP01106 439 aaPredicted RBP22.9■■□□□ 1.26
CLN3-245ENST00000636172 CCL5P13501 91 aa22.9■■□□□ 1.26
CLN3-245ENST00000636172 CCSAPQ6IQ19 270 aaPredicted RBP22.9■■□□□ 1.26
CLN3-245ENST00000636172 CNNM4Q6P4Q7 775 aa22.9■■□□□ 1.26
CLN3-245ENST00000636172 PADI6Q6TGC4 694 aa22.9■■□□□ 1.26
CLN3-245ENST00000636172 C1orf186Q6ZWK4 172 aa22.9■■□□□ 1.26
CLN3-245ENST00000636172 DDX12PQ92771 950 aa22.9■■□□□ 1.26
CLN3-245ENST00000636172 CCDC43Q96MW1 224 aaKnown RBP22.9■■□□□ 1.26
CLN3-245ENST00000636172 KIAA1468Q9P260 1216 aa22.9■■□□□ 1.26
CLN3-245ENST00000636172 TRPC6Q9Y210 931 aa22.9■■□□□ 1.26
CLN3-245ENST00000636172 PCDHA5Q9Y5H7 936 aa22.9■■□□□ 1.26
CLN3-245ENST00000636172 NPHP3-ACAD11A0A0J9YXS1 232 aa22.89■■□□□ 1.26
CLN3-245ENST00000636172 KPNA6O60684 536 aa22.89■■□□□ 1.26
CLN3-245ENST00000636172 TARBP2Q15633 366 aaKnown RBP22.89■■□□□ 1.26
CLN3-245ENST00000636172 MTERF2Q49AM1 385 aa22.89■■□□□ 1.26
CLN3-245ENST00000636172 DYMQ7RTS9 669 aa22.89■■□□□ 1.26
CLN3-245ENST00000636172 SPATA20Q8TB22 786 aa22.89■■□□□ 1.26
CLN3-245ENST00000636172 DNAJC19Q96DA6 116 aa22.89■■□□□ 1.26
CLN3-245ENST00000636172 CEP89Q96ST8 783 aa22.89■■□□□ 1.26
CLN3-245ENST00000636172 KCND2Q9NZV8 630 aa22.89■■□□□ 1.26
CLN3-245ENST00000636172 ZBTB42B2RXF5 422 aa22.88■■□□□ 1.25
CLN3-245ENST00000636172 RAD51AP2Q09MP3 1159 aa22.88■■□□□ 1.25
CLN3-245ENST00000636172 ARMC5Q96C12 935 aa22.88■■□□□ 1.25
CLN3-245ENST00000636172 ZNF333Q96JL9 665 aa22.88■■□□□ 1.25
CLN3-245ENST00000636172 TUBE1Q9UJT0 475 aa22.88■■□□□ 1.25
CLN3-245ENST00000636172 SYCE3A1L190 88 aa22.87■■□□□ 1.25
CLN3-245ENST00000636172 HAS3O00219 553 aa22.87■■□□□ 1.25
CLN3-245ENST00000636172 ZEB2O60315 1214 aa22.87■■□□□ 1.25
CLN3-245ENST00000636172 HBP1O60381 514 aa22.87■■□□□ 1.25
CLN3-245ENST00000636172 USO1O60763 962 aaKnown RBP22.87■■□□□ 1.25
CLN3-245ENST00000636172 LETM1O95202 739 aaPredicted RBP22.87■■□□□ 1.25
CLN3-245ENST00000636172 SMC2O95347 1197 aa22.87■■□□□ 1.25
CLN3-245ENST00000636172 MYCNP04198 464 aaPredicted RBP22.87■■□□□ 1.25
CLN3-245ENST00000636172 SARSP49591 514 aaKnown RBP22.87■■□□□ 1.25
CLN3-245ENST00000636172 ASIC1P78348 528 aa22.87■■□□□ 1.25
CLN3-245ENST00000636172 GIT2Q14161 759 aa22.87■■□□□ 1.25
CLN3-245ENST00000636172 MFSD10Q14728 455 aa22.87■■□□□ 1.25
CLN3-245ENST00000636172 LRRC41Q15345 812 aa22.87■■□□□ 1.25
CLN3-245ENST00000636172 KCNA10Q16322 511 aa22.87■■□□□ 1.25
CLN3-245ENST00000636172 NT5DC1Q5TFE4 455 aa22.87■■□□□ 1.25
CLN3-245ENST00000636172 RNF180Q86T96 592 aa22.87■■□□□ 1.25
CLN3-245ENST00000636172 SMARCE1Q969G3 411 aa22.87■■□□□ 1.25
CLN3-245ENST00000636172 REEP2Q9BRK0 252 aa22.87■■□□□ 1.25
CLN3-245ENST00000636172 BMP2KQ9NSY1 1161 aaPredicted RBP22.87■■□□□ 1.25
CLN3-245ENST00000636172 SCN10AQ9Y5Y9 1956 aa22.87■■□□□ 1.25
CLN3-245ENST00000636172 KLRC4O43908 158 aa22.87■■□□□ 1.25
CLN3-245ENST00000636172 RPN1P04843 607 aaKnown RBP22.87■■□□□ 1.25
CLN3-245ENST00000636172 KRT18P05783 430 aaKnown RBP22.87■■□□□ 1.25
CLN3-245ENST00000636172 PSEN2P49810 448 aa22.87■■□□□ 1.25
CLN3-245ENST00000636172 CACNB1Q02641 598 aaPredicted RBP22.87■■□□□ 1.25
CLN3-245ENST00000636172 KIAA0753Q2KHM9 967 aa22.87■■□□□ 1.25
CLN3-245ENST00000636172 CXCL17Q6UXB2 119 aa22.87■■□□□ 1.25
CLN3-245ENST00000636172 MTG1Q9BT17 334 aaPredicted RBP22.87■■□□□ 1.25
CLN3-245ENST00000636172 RNF208Q9H0X6 261 aa22.87■■□□□ 1.25
CLN3-245ENST00000636172 ASGR1P07306 291 aa22.86■■□□□ 1.25
CLN3-245ENST00000636172 INSRRP14616 1297 aa22.86■■□□□ 1.25
CLN3-245ENST00000636172 GUCY2CP25092 1073 aa22.86■■□□□ 1.25
CLN3-245ENST00000636172 PCSK9Q8NBP7 692 aaKnown RBP22.86■■□□□ 1.25
CLN3-245ENST00000636172 DEFB118Q96PH6 123 aa22.86■■□□□ 1.25
CLN3-245ENST00000636172 KATNAL1Q9BW62 490 aa22.86■■□□□ 1.25
CLN3-245ENST00000636172 PPME1Q9Y570 386 aa22.86■■□□□ 1.25
CLN3-245ENST00000636172 DGAT1O75907 488 aa22.85■■□□□ 1.25
CLN3-245ENST00000636172 CHMP4BP1P59074 171 aa22.85■■□□□ 1.25
CLN3-245ENST00000636172 TRAPPC12Q8WVT3 735 aa22.85■■□□□ 1.25
CLN3-245ENST00000636172 ABHD8Q96I13 439 aa22.85■■□□□ 1.25
CLN3-245ENST00000636172 GSDMAQ96QA5 445 aa22.85■■□□□ 1.25
CLN3-245ENST00000636172 DHX33Q9H6R0 707 aaKnown RBP22.85■■□□□ 1.25
CLN3-245ENST00000636172 PDLIM7Q9NR12 457 aa22.85■■□□□ 1.25
CLN3-245ENST00000636172 MAN1B1Q9UKM7 699 aa22.85■■□□□ 1.25
CLN3-245ENST00000636172 COL1A2P08123 1366 aa22.85■■□□□ 1.25
CLN3-245ENST00000636172 FRMD3A2A2Y4 597 aa22.84■■□□□ 1.25
CLN3-245ENST00000636172 RSPH10B2B2RC85 870 aa22.84■■□□□ 1.25
CLN3-245ENST00000636172 RSPH10BP0C881 870 aa22.84■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms