RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 LZTS2Q9BRK4 669 aa16.79■□□□□ 0.28
PNKP-218ENST00000625299 ERVK-5Q9HDB9 667 aa16.79■□□□□ 0.28
PNKP-218ENST00000625299 TSHZ2Q9NRE2 1034 aa16.79■□□□□ 0.28
PNKP-218ENST00000625299 NOC2LQ9Y3T9 749 aaKnown RBP16.79■□□□□ 0.28
PNKP-218ENST00000625299 KDM3AQ9Y4C1 1321 aa16.78■□□□□ 0.28
PNKP-218ENST00000625299 SMIM35A0A1B0GVV1 85 aa16.78■□□□□ 0.28
PNKP-218ENST00000625299 FSD2A1L4K1 749 aa16.78■□□□□ 0.28
PNKP-218ENST00000625299 MAFGO15525 162 aa16.78■□□□□ 0.28
PNKP-218ENST00000625299 PDGFBP01127 241 aaPredicted RBP16.78■□□□□ 0.28
PNKP-218ENST00000625299 FGFR1P11362 822 aa16.78■□□□□ 0.28
PNKP-218ENST00000625299 GSPT1P15170 499 aaKnown RBP16.78■□□□□ 0.28
PNKP-218ENST00000625299 GNAQP50148 359 aa16.78■□□□□ 0.28
PNKP-218ENST00000625299 CASC1Q6TDU7 716 aa16.78■□□□□ 0.28
PNKP-218ENST00000625299 PLPPR4Q7Z2D5 763 aa16.78■□□□□ 0.28
PNKP-218ENST00000625299 HEATR3Q7Z4Q2 680 aa16.78■□□□□ 0.28
PNKP-218ENST00000625299 NME8Q8N427 588 aa16.78■□□□□ 0.28
PNKP-218ENST00000625299 IRF2BPLQ9H1B7 796 aa16.78■□□□□ 0.28
PNKP-218ENST00000625299 ENTPD7Q9NQZ7 604 aa16.78■□□□□ 0.28
PNKP-218ENST00000625299 KCNH7Q9NS40 1196 aa16.78■□□□□ 0.28
PNKP-218ENST00000625299 C1orf112Q9NSG2 853 aa16.78■□□□□ 0.28
PNKP-218ENST00000625299 TYW1Q9NV66 732 aaKnown RBP16.78■□□□□ 0.28
PNKP-218ENST00000625299 MYO15AQ9UKN7 3530 aa16.78■□□□□ 0.28
PNKP-218ENST00000625299 EVPLQ92817 2033 aa16.77■□□□□ 0.28
PNKP-218ENST00000625299 CCDC69A6NI79 296 aa16.77■□□□□ 0.28
PNKP-218ENST00000625299 DDX39AO00148 427 aaKnown RBP16.77■□□□□ 0.28
PNKP-218ENST00000625299 BACH1O14867 736 aa16.77■□□□□ 0.28
PNKP-218ENST00000625299 KLRC1P26715 233 aa16.77■□□□□ 0.28
PNKP-218ENST00000625299 SMARCA1P28370 1054 aa16.77■□□□□ 0.28
PNKP-218ENST00000625299 AAMPQ13685 434 aa16.77■□□□□ 0.28
PNKP-218ENST00000625299 TTC22Q5TAA0 569 aa16.77■□□□□ 0.28
PNKP-218ENST00000625299 ANKRD54Q6NXT1 300 aa16.77■□□□□ 0.28
PNKP-218ENST00000625299 CYP2W1Q8TAV3 490 aa16.77■□□□□ 0.28
PNKP-218ENST00000625299 TMEM40Q8WWA1 233 aa16.77■□□□□ 0.28
PNKP-218ENST00000625299 PGBD1Q96JS3 809 aa16.77■□□□□ 0.28
PNKP-218ENST00000625299 TCF25Q9BQ70 676 aa16.77■□□□□ 0.28
PNKP-218ENST00000625299 MXRA8Q9BRK3 442 aa16.77■□□□□ 0.28
PNKP-218ENST00000625299 CDHR5Q9HBB8 845 aa16.77■□□□□ 0.28
PNKP-218ENST00000625299 ATP6V0A4Q9HBG4 840 aa16.77■□□□□ 0.28
PNKP-218ENST00000625299 ST3GAL5Q9UNP4 418 aa16.77■□□□□ 0.28
PNKP-218ENST00000625299 FSCN2O14926 492 aa16.76■□□□□ 0.27
PNKP-218ENST00000625299 PRC1O43663 620 aa16.76■□□□□ 0.27
PNKP-218ENST00000625299 ARP10275 920 aa16.76■□□□□ 0.27
PNKP-218ENST00000625299 LAG3P18627 525 aa16.76■□□□□ 0.27
PNKP-218ENST00000625299 PDE12Q6L8Q7 609 aaKnown RBP16.76■□□□□ 0.27
PNKP-218ENST00000625299 SLC24A5Q71RS6 500 aa16.76■□□□□ 0.27
PNKP-218ENST00000625299 RIPOR3Q96MK2 946 aa16.76■□□□□ 0.27
PNKP-218ENST00000625299 S1PR5Q9H228 398 aa16.76■□□□□ 0.27
PNKP-218ENST00000625299 RGS18Q9NS28 235 aa16.76■□□□□ 0.27
PNKP-218ENST00000625299 RNF216Q9NWF9 866 aaPredicted RBP16.76■□□□□ 0.27
PNKP-218ENST00000625299 PUF60Q9UHX1 559 aaKnown RBP16.76■□□□□ 0.27
PNKP-218ENST00000625299 CDH22Q9UJ99 828 aa16.76■□□□□ 0.27
PNKP-218ENST00000625299 PLXNA3P51805 1871 aa16.76■□□□□ 0.27
PNKP-218ENST00000625299 NFASCO94856 1347 aa16.75■□□□□ 0.27
PNKP-218ENST00000625299 HIDE1A8MVS5 230 aa16.75■□□□□ 0.27
PNKP-218ENST00000625299 GPR182O15218 404 aa16.75■□□□□ 0.27
PNKP-218ENST00000625299 CHMLP26374 656 aa16.75■□□□□ 0.27
PNKP-218ENST00000625299 PDE4AP27815 886 aa16.75■□□□□ 0.27
PNKP-218ENST00000625299 ITGB3BPQ13352 177 aaPredicted RBP16.75■□□□□ 0.27
PNKP-218ENST00000625299 ODR4Q5SWX8 454 aa16.75■□□□□ 0.27
PNKP-218ENST00000625299 SYCE2Q6PIF2 218 aa16.75■□□□□ 0.27
PNKP-218ENST00000625299 KREMEN2Q8NCW0 462 aa16.75■□□□□ 0.27
PNKP-218ENST00000625299 MRPS27Q92552 414 aaKnown RBP16.75■□□□□ 0.27
PNKP-218ENST00000625299 OSMRQ99650 979 aa16.75■□□□□ 0.27
PNKP-218ENST00000625299 CWH43Q9H720 699 aa16.75■□□□□ 0.27
PNKP-218ENST00000625299 C9IYK1 514 aa16.74■□□□□ 0.27
PNKP-218ENST00000625299 SH2B2O14492 632 aaPredicted RBP16.74■□□□□ 0.27
PNKP-218ENST00000625299 CA8P35219 290 aa16.74■□□□□ 0.27
PNKP-218ENST00000625299 PBX3P40426 434 aa16.74■□□□□ 0.27
PNKP-218ENST00000625299 KIZQ2M2Z5 673 aa16.74■□□□□ 0.27
PNKP-218ENST00000625299 FAM160B1Q5W0V3 765 aa16.74■□□□□ 0.27
PNKP-218ENST00000625299 KIAA0319LQ8IZA0 1049 aa16.74■□□□□ 0.27
PNKP-218ENST00000625299 AGO4Q9HCK5 861 aaKnown RBP16.74■□□□□ 0.27
PNKP-218ENST00000625299 TMEM161AQ9NX61 479 aa16.74■□□□□ 0.27
PNKP-218ENST00000625299 NR2E1Q9Y466 385 aa16.74■□□□□ 0.27
PNKP-218ENST00000625299 RBM8AQ9Y5S9 174 aaKnown RBP16.74■□□□□ 0.27
PNKP-218ENST00000625299 GALR2O43603 387 aaPredicted RBP16.73■□□□□ 0.27
PNKP-218ENST00000625299 HBP1O60381 514 aa16.73■□□□□ 0.27
PNKP-218ENST00000625299 CALM1P0DP23 149 aa16.73■□□□□ 0.27
PNKP-218ENST00000625299 CALM2P0DP24 149 aa16.73■□□□□ 0.27
PNKP-218ENST00000625299 CALM3P0DP25 149 aa16.73■□□□□ 0.27
PNKP-218ENST00000625299 SLC26A2P50443 739 aa16.73■□□□□ 0.27
PNKP-218ENST00000625299 MTMR3Q13615 1198 aa16.73■□□□□ 0.27
PNKP-218ENST00000625299 KCNC3Q14003 757 aa16.73■□□□□ 0.27
PNKP-218ENST00000625299 CEP55Q53EZ4 464 aa16.73■□□□□ 0.27
PNKP-218ENST00000625299 TMEM184AQ6ZMB5 413 aa16.73■□□□□ 0.27
PNKP-218ENST00000625299 TRMT1LQ7Z2T5 733 aaKnown RBP16.73■□□□□ 0.27
PNKP-218ENST00000625299 TMC7Q7Z402 723 aa16.73■□□□□ 0.27
PNKP-218ENST00000625299 FAM228AQ86W67 206 aa16.73■□□□□ 0.27
PNKP-218ENST00000625299 CKAP2LQ8IYA6 745 aa16.73■□□□□ 0.27
PNKP-218ENST00000625299 EXOC6Q8TAG9 804 aa16.73■□□□□ 0.27
PNKP-218ENST00000625299 NGRNQ9NPE2 291 aaKnown RBP16.73■□□□□ 0.27
PNKP-218ENST00000625299 LZTS1Q9Y250 596 aa16.73■□□□□ 0.27
PNKP-218ENST00000625299 PTPRZ1P23471 2315 aaPredicted RBP16.73■□□□□ 0.27
PNKP-218ENST00000625299 MYO10Q9HD67 2058 aa16.73■□□□□ 0.27
PNKP-218ENST00000625299 CCNE2O96020 404 aa16.72■□□□□ 0.27
PNKP-218ENST00000625299 VTNP04004 478 aa16.72■□□□□ 0.27
PNKP-218ENST00000625299 HOXB8P17481 243 aaPredicted RBP16.72■□□□□ 0.27
PNKP-218ENST00000625299 MCM5P33992 734 aa16.72■□□□□ 0.27
PNKP-218ENST00000625299 ZNF76P36508 570 aa16.72■□□□□ 0.27
PNKP-218ENST00000625299 NAPAP54920 295 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms