RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 TCIRG1Q13488 830 aa9.55□□□□□ -0.88
VCL-206ENST00000623461 RIN2Q8WYP3 895 aaPredicted RBP9.55□□□□□ -0.88
VCL-206ENST00000623461 HDAC11Q96DB2 347 aa9.55□□□□□ -0.88
VCL-206ENST00000623461 HIC2Q96JB3 615 aa9.55□□□□□ -0.88
VCL-206ENST00000623461 DDX47Q9H0S4 455 aaKnown RBP9.55□□□□□ -0.88
VCL-206ENST00000623461 SMYD3Q9H7B4 428 aa9.55□□□□□ -0.88
VCL-206ENST00000623461 IPO11Q9UI26 975 aaKnown RBP9.55□□□□□ -0.88
VCL-206ENST00000623461 ATP10DQ9P241 1426 aa9.55□□□□□ -0.88
VCL-206ENST00000623461 PRPSAP1Q14558 356 aa9.55□□□□□ -0.88
VCL-206ENST00000623461 WWP1Q9H0M0 922 aa9.55□□□□□ -0.88
VCL-206ENST00000623461 PKD2L1Q9P0L9 805 aa9.55□□□□□ -0.88
VCL-206ENST00000623461 LRRIQ3A6PVS8 624 aaPredicted RBP9.54□□□□□ -0.88
VCL-206ENST00000623461 NQO1P15559 274 aaKnown RBP9.54□□□□□ -0.88
VCL-206ENST00000623461 ABCD1P33897 745 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 SHC4Q6S5L8 630 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 DEPDC1BQ8WUY9 529 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 THAP11Q96EK4 314 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 TRPV6Q9H1D0 765 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 SERPINB3P29508 390 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 GPC5P78333 572 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 TRIP13Q15645 432 aaPredicted RBP9.54□□□□□ -0.88
VCL-206ENST00000623461 MYCBPAPQ8TBZ2 947 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 TBC1D22AQ8WUA7 517 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 TLK1Q9UKI8 766 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 PFASO15067 1338 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 KRT38O76015 456 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 SCTRP47872 440 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 PACS2Q86VP3 889 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 SLC26A7Q8TE54 656 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 FAM129AQ9BZQ8 928 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 ISCUQ9H1K1 167 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 UBN2Q6ZU65 1347 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 CFAP69A5D8W1 941 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 IGF2BP3O00425 579 aaKnown RBP eCLIP9.54□□□□□ -0.88
VCL-206ENST00000623461 UNC13BO14795 1591 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 WDR46O15213 610 aaKnown RBP9.54□□□□□ -0.88
VCL-206ENST00000623461 DNAJC6O75061 913 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 LRRC14Q15048 493 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 KRT26Q7Z3Y9 468 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 ACCSQ96QU6 501 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 C10orf88Q9H8K7 445 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 UBE2TQ9NPD8 197 aaPredicted RBP9.54□□□□□ -0.88
VCL-206ENST00000623461 ANKFY1Q9P2R3 1169 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 PLEKHG1Q9ULL1 1385 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 TSC22D4Q9Y3Q8 395 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 DEAF1O75398 565 aaPredicted RBP9.54□□□□□ -0.88
VCL-206ENST00000623461 SERPINB10P48595 397 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 PPP2R5CQ13362 524 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 KCNB1Q14721 858 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 SCYL2Q6P3W7 929 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 ACAD11Q709F0 780 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 MFN1Q8IWA4 741 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 KIAA2013Q8IYS2 634 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 PRPF31Q8WWY3 499 aaKnown RBP9.54□□□□□ -0.88
VCL-206ENST00000623461 MTA3Q9BTC8 594 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 IRX2Q9BZI1 471 aaPredicted RBP9.54□□□□□ -0.88
VCL-206ENST00000623461 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.54□□□□□ -0.88
VCL-206ENST00000623461 PAPOLBQ9NRJ5 636 aaKnown RBP9.54□□□□□ -0.88
VCL-206ENST00000623461 GINM1Q9NU53 330 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 ETAA1Q9NY74 926 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 SEPT3Q9UH03 358 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 ADGRL3Q9HAR2 1447 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 ZNF185O15231 689 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 BASP1P80723 227 aaKnown RBP9.54□□□□□ -0.88
VCL-206ENST00000623461 ORC2Q13416 577 aaPredicted RBP9.54□□□□□ -0.88
VCL-206ENST00000623461 PDXDC1Q6P996 788 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 RSRC2Q7L4I2 434 aaKnown RBP9.54□□□□□ -0.88
VCL-206ENST00000623461 NUDCD3Q8IVD9 361 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 TTC13Q8NBP0 860 aa9.54□□□□□ -0.88
VCL-206ENST00000623461 RBM41Q96IZ5 413 aaKnown RBP9.54□□□□□ -0.88
VCL-206ENST00000623461 ZNF277Q9NRM2 450 aaPredicted RBP9.54□□□□□ -0.88
VCL-206ENST00000623461 SSU72P8A0A1W2PR75 194 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 HIPK4Q8NE63 616 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 GIPC2Q8TF65 315 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 DCTN4Q9UJW0 460 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.53□□□□□ -0.88
VCL-206ENST00000623461 YEATS2Q9ULM3 1422 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 PFDN6O15212 129 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 PIK3CAP42336 1068 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 LIG4P49917 911 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 ALCAMQ13740 583 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 CHRNA2Q15822 529 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 ADRM1Q16186 407 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 BBS9Q3SYG4 887 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 BRDTQ58F21 947 aaPredicted RBP9.53□□□□□ -0.88
VCL-206ENST00000623461 RSPH3Q86UC2 560 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 MAML3Q96JK9 1138 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 TEKT3Q9BXF9 490 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 ADD3Q9UEY8 706 aaKnown RBP9.53□□□□□ -0.88
VCL-206ENST00000623461 ATP7AQ04656 1500 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 CDK12Q9NYV4 1490 aaPredicted RBP9.53□□□□□ -0.88
VCL-206ENST00000623461 HSPA4LO95757 839 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 PSMC1P62191 440 aaKnown RBP9.53□□□□□ -0.88
VCL-206ENST00000623461 OLFML2BQ68BL8 750 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 ZC3H12CQ9C0D7 883 aaKnown RBP9.53□□□□□ -0.88
VCL-206ENST00000623461 CCDC87Q9NVE4 849 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 ARHGAP26Q9UNA1 814 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 KPNA7A9QM74 516 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 CNGA3Q16281 694 aa9.53□□□□□ -0.88
VCL-206ENST00000623461 FAM83BQ5T0W9 1011 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms