RNA–Protein interactions for RNA: ENST00000621870.4

GGA3-223, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 1 (best)

Gene GGA3, Length 4,034 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-223ENST00000621870 NR3C1P04150 777 aa10.01□□□□□ -0.81
GGA3-223ENST00000621870 SCFD2Q8WU76 684 aa10.01□□□□□ -0.81
GGA3-223ENST00000621870 GLIS2Q9BZE0 524 aaPredicted RBP10.01□□□□□ -0.81
GGA3-223ENST00000621870 NSRP1Q9H0G5 558 aaKnown RBP10.01□□□□□ -0.81
GGA3-223ENST00000621870 JMJD4Q9H9V9 463 aa10.01□□□□□ -0.81
GGA3-223ENST00000621870 ADCY8P40145 1251 aa10□□□□□ -0.81
GGA3-223ENST00000621870 SLC12A2P55011 1212 aa10□□□□□ -0.81
GGA3-223ENST00000621870 RBL2Q08999 1139 aa10□□□□□ -0.81
GGA3-223ENST00000621870 COASYQ13057 564 aa10□□□□□ -0.81
GGA3-223ENST00000621870 SKIV2LQ15477 1246 aaKnown RBP10□□□□□ -0.81
GGA3-223ENST00000621870 HAUS6Q7Z4H7 955 aa10□□□□□ -0.81
GGA3-223ENST00000621870 RYBPQ8N488 228 aaPredicted RBP10□□□□□ -0.81
GGA3-223ENST00000621870 RAD54LQ92698 747 aa10□□□□□ -0.81
GGA3-223ENST00000621870 DPH5Q9H2P9 285 aa10□□□□□ -0.81
GGA3-223ENST00000621870 VPS18Q9P253 973 aa10□□□□□ -0.81
GGA3-223ENST00000621870 FNDC3AQ9Y2H6 1198 aaKnown RBP10□□□□□ -0.81
GGA3-223ENST00000621870 TNS2Q63HR2 1409 aa10□□□□□ -0.81
GGA3-223ENST00000621870 WTIPA6NIX2 430 aaPredicted RBP10□□□□□ -0.81
GGA3-223ENST00000621870 HUS1O60921 280 aa10□□□□□ -0.81
GGA3-223ENST00000621870 ZNF18P17022 549 aa10□□□□□ -0.81
GGA3-223ENST00000621870 TMEM62Q0P6H9 643 aa10□□□□□ -0.81
GGA3-223ENST00000621870 PPFIA1Q13136 1202 aa10□□□□□ -0.81
GGA3-223ENST00000621870 LRRC8AQ8IWT6 810 aa10□□□□□ -0.81
GGA3-223ENST00000621870 HYOU1Q9Y4L1 999 aa10□□□□□ -0.81
GGA3-223ENST00000621870 ENC1O14682 589 aa10□□□□□ -0.81
GGA3-223ENST00000621870 SH3BP5O60239 455 aa10□□□□□ -0.81
GGA3-223ENST00000621870 SLC25A27O95847 323 aa10□□□□□ -0.81
GGA3-223ENST00000621870 IVLP07476 585 aa10□□□□□ -0.81
GGA3-223ENST00000621870 RARBP10826 455 aa10□□□□□ -0.81
GGA3-223ENST00000621870 XPAP23025 273 aaPredicted RBP10□□□□□ -0.81
GGA3-223ENST00000621870 PRCPP42785 496 aa10□□□□□ -0.81
GGA3-223ENST00000621870 MAPK8IP2Q13387 824 aaPredicted RBP10□□□□□ -0.81
GGA3-223ENST00000621870 KRT31Q15323 416 aa10□□□□□ -0.81
GGA3-223ENST00000621870 UHMK1Q8TAS1 419 aaKnown RBP10□□□□□ -0.81
GGA3-223ENST00000621870 TMEM143Q96AN5 459 aa10□□□□□ -0.81
GGA3-223ENST00000621870 HAUS1Q96CS2 278 aa10□□□□□ -0.81
GGA3-223ENST00000621870 HGSO14964 777 aaPredicted RBP9.99□□□□□ -0.81
GGA3-223ENST00000621870 UPP2O95045 317 aa9.99□□□□□ -0.81
GGA3-223ENST00000621870 TCP1P17987 556 aaKnown RBP9.99□□□□□ -0.81
GGA3-223ENST00000621870 FGFR2P21802 821 aa9.99□□□□□ -0.81
GGA3-223ENST00000621870 KCNA4P22459 653 aa9.99□□□□□ -0.81
GGA3-223ENST00000621870 TROAPQ12815 778 aa9.99□□□□□ -0.81
GGA3-223ENST00000621870 PAK2Q13177 524 aa9.99□□□□□ -0.81
GGA3-223ENST00000621870 TUBB2AQ13885 445 aa9.99□□□□□ -0.81
GGA3-223ENST00000621870 ELF2Q15723 593 aa9.99□□□□□ -0.81
GGA3-223ENST00000621870 KCNV1Q6PIU1 500 aa9.99□□□□□ -0.81
GGA3-223ENST00000621870 PPP4R3CPQ6ZMV5 832 aa9.99□□□□□ -0.81
GGA3-223ENST00000621870 MB21D1Q8N884 522 aa9.99□□□□□ -0.81
GGA3-223ENST00000621870 ZNF579Q8NAF0 562 aaKnown RBP9.99□□□□□ -0.81
GGA3-223ENST00000621870 TUBB2BQ9BVA1 445 aa9.99□□□□□ -0.81
GGA3-223ENST00000621870 RRAGCQ9HB90 399 aa9.99□□□□□ -0.81
GGA3-223ENST00000621870 KCNQ5Q9NR82 932 aa9.99□□□□□ -0.81
GGA3-223ENST00000621870 SPTLC3Q9NUV7 552 aa9.99□□□□□ -0.81
GGA3-223ENST00000621870 CPSF3Q9UKF6 684 aaKnown RBP9.99□□□□□ -0.81
GGA3-223ENST00000621870 AFG3L2Q9Y4W6 797 aa9.99□□□□□ -0.81
GGA3-223ENST00000621870 TMEM131LA2VDJ0 1609 aa9.99□□□□□ -0.81
GGA3-223ENST00000621870 PVALEFA0A1B0GWK0 134 aa9.99□□□□□ -0.81
GGA3-223ENST00000621870 WNT10BO00744 389 aa9.99□□□□□ -0.81
GGA3-223ENST00000621870 CAPN2P17655 700 aa9.99□□□□□ -0.81
GGA3-223ENST00000621870 ANXA13P27216 316 aa9.99□□□□□ -0.81
GGA3-223ENST00000621870 EIF4A3P38919 411 aaKnown RBP9.99□□□□□ -0.81
GGA3-223ENST00000621870 PSMC4P43686 418 aa9.99□□□□□ -0.81
GGA3-223ENST00000621870 ZBED6P86452 979 aa9.99□□□□□ -0.81
GGA3-223ENST00000621870 XKR3Q5GH77 459 aa9.99□□□□□ -0.81
GGA3-223ENST00000621870 SMC1BQ8NDV3 1235 aa9.99□□□□□ -0.81
GGA3-223ENST00000621870 CCT6BQ92526 530 aa9.99□□□□□ -0.81
GGA3-223ENST00000621870 C2orf40Q9H1Z8 148 aa9.99□□□□□ -0.81
GGA3-223ENST00000621870 PIN4Q9Y237 131 aaKnown RBP9.99□□□□□ -0.81
GGA3-223ENST00000621870 MED7O43513 233 aa9.99□□□□□ -0.81
GGA3-223ENST00000621870 CRCPO75575 148 aa9.99□□□□□ -0.81
GGA3-223ENST00000621870 VIMP08670 466 aaKnown RBP9.99□□□□□ -0.81
GGA3-223ENST00000621870 TRIM49P0CI25 452 aa9.99□□□□□ -0.81
GGA3-223ENST00000621870 TRIM49CP0CI26 452 aa9.99□□□□□ -0.81
GGA3-223ENST00000621870 YWHABP31946 246 aaKnown RBP9.99□□□□□ -0.81
GGA3-223ENST00000621870 DYNLT1P63172 113 aa9.99□□□□□ -0.81
GGA3-223ENST00000621870 ATP2C1P98194 919 aaPredicted RBP9.99□□□□□ -0.81
GGA3-223ENST00000621870 SF3A3Q12874 501 aaKnown RBP eCLIP9.99□□□□□ -0.811e-6■■■■□ 20.4
GGA3-223ENST00000621870 CCDC6Q16204 474 aa9.99□□□□□ -0.81
GGA3-223ENST00000621870 CDO1Q16878 200 aa9.99□□□□□ -0.81
GGA3-223ENST00000621870 ZNF699Q32M78 642 aa9.99□□□□□ -0.81
GGA3-223ENST00000621870 KRT71Q3SY84 523 aa9.99□□□□□ -0.81
GGA3-223ENST00000621870 ALKBH5Q6P6C2 394 aaKnown RBP9.99□□□□□ -0.81
GGA3-223ENST00000621870 KBTBD13C9JR72 458 aa9.98□□□□□ -0.81
GGA3-223ENST00000621870 FOXN1O15353 648 aa9.98□□□□□ -0.81
GGA3-223ENST00000621870 HIP1RO75146 1068 aa9.98□□□□□ -0.81
GGA3-223ENST00000621870 NMT1P30419 496 aaKnown RBP9.98□□□□□ -0.81
GGA3-223ENST00000621870 GUCY2FP51841 1108 aa9.98□□□□□ -0.81
GGA3-223ENST00000621870 BACE1P56817 501 aa9.98□□□□□ -0.81
GGA3-223ENST00000621870 SARNPP82979 210 aaKnown RBP9.98□□□□□ -0.81
GGA3-223ENST00000621870 KNOP1Q1ED39 458 aaKnown RBP9.98□□□□□ -0.81
GGA3-223ENST00000621870 C6orf163Q5TEZ5 329 aa9.98□□□□□ -0.81
GGA3-223ENST00000621870 LMBRD2Q68DH5 695 aaPredicted RBP9.98□□□□□ -0.81
GGA3-223ENST00000621870 HPS3Q969F9 1004 aa9.98□□□□□ -0.81
GGA3-223ENST00000621870 MAGOHBQ96A72 148 aaKnown RBP9.98□□□□□ -0.81
GGA3-223ENST00000621870 MRPL4Q9BYD3 311 aaKnown RBP9.98□□□□□ -0.81
GGA3-223ENST00000621870 SLC12A6Q9UHW9 1150 aa9.98□□□□□ -0.81
GGA3-223ENST00000621870 MAD1L1Q9Y6D9 718 aa9.98□□□□□ -0.81
GGA3-223ENST00000621870 FER1L4A9Z1Z3 1794 aa9.98□□□□□ -0.81
GGA3-223ENST00000621870 SLC4A1P02730 911 aa9.98□□□□□ -0.81
GGA3-223ENST00000621870 SREBF2Q12772 1141 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms