RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 TTLL7Q6ZT98 887 aa6.06□□□□□ -1.44
LINC00540-201ENST00000611481 USP50Q70EL3 339 aaPredicted RBP6.06□□□□□ -1.44
LINC00540-201ENST00000611481 ZNF761Q86XN6 746 aaPredicted RBP6.06□□□□□ -1.44
LINC00540-201ENST00000611481 TAB3Q8N5C8 712 aaPredicted RBP6.06□□□□□ -1.44
LINC00540-201ENST00000611481 DEFB123Q8N688 67 aa6.06□□□□□ -1.44
LINC00540-201ENST00000611481 SMARCC2Q8TAQ2 1214 aa6.06□□□□□ -1.44
LINC00540-201ENST00000611481 PEX11GQ96HA9 241 aa6.06□□□□□ -1.44
LINC00540-201ENST00000611481 PUS7Q96PZ0 661 aaKnown RBP6.06□□□□□ -1.44
LINC00540-201ENST00000611481 KDRP35968 1356 aa6.06□□□□□ -1.44
LINC00540-201ENST00000611481 KTN1Q86UP2 1357 aaKnown RBP6.06□□□□□ -1.44
LINC00540-201ENST00000611481 C1QTNF3-AMACRE9PGA6 284 aa6.05□□□□□ -1.44
LINC00540-201ENST00000611481 ITGA4P13612 1032 aa6.05□□□□□ -1.44
LINC00540-201ENST00000611481 ERCC3P19447 782 aa6.05□□□□□ -1.44
LINC00540-201ENST00000611481 CDK11BP21127 795 aaKnown RBP6.05□□□□□ -1.44
LINC00540-201ENST00000611481 SOGA3Q5TF21 947 aa6.05□□□□□ -1.44
LINC00540-201ENST00000611481 NBPF6Q5VWK0 638 aa6.05□□□□□ -1.44
LINC00540-201ENST00000611481 Q7L0L9 218 aa6.05□□□□□ -1.44
LINC00540-201ENST00000611481 PPFIBP1Q86W92 1011 aa6.05□□□□□ -1.44
LINC00540-201ENST00000611481 LZTR1Q8N653 840 aa6.05□□□□□ -1.44
LINC00540-201ENST00000611481 TTC9BQ8N6N2 239 aa6.05□□□□□ -1.44
LINC00540-201ENST00000611481 NBPF4Q96M43 638 aa6.05□□□□□ -1.44
LINC00540-201ENST00000611481 SAMD11Q96NU1 681 aa6.05□□□□□ -1.44
LINC00540-201ENST00000611481 BCAS3Q9H6U6 928 aa6.05□□□□□ -1.44
LINC00540-201ENST00000611481 RXFP1Q9HBX9 757 aa6.05□□□□□ -1.44
LINC00540-201ENST00000611481 SPATA6Q9NWH7 488 aaPredicted RBP6.05□□□□□ -1.44
LINC00540-201ENST00000611481 NUDT5Q9UKK9 219 aa6.05□□□□□ -1.44
LINC00540-201ENST00000611481 ZNRF3Q9ULT6 936 aa6.05□□□□□ -1.44
LINC00540-201ENST00000611481 MYH14Q7Z406 1995 aaKnown RBP6.05□□□□□ -1.44
LINC00540-201ENST00000611481 LAMB4A4D0S4 1761 aa6.05□□□□□ -1.44
LINC00540-201ENST00000611481 MAP3K19Q56UN5 1328 aa6.04□□□□□ -1.44
LINC00540-201ENST00000611481 TTC28Q96AY4 2481 aa6.04□□□□□ -1.44
LINC00540-201ENST00000611481 RBBP6Q7Z6E9 1792 aaKnown RBP6.04□□□□□ -1.44
LINC00540-201ENST00000611481 A0A087WZG4 1122 aa6.04□□□□□ -1.44
LINC00540-201ENST00000611481 FZD9O00144 591 aa6.04□□□□□ -1.44
LINC00540-201ENST00000611481 SUV39H1O43463 412 aa6.04□□□□□ -1.44
LINC00540-201ENST00000611481 TP53P04637 393 aaPredicted RBP6.04□□□□□ -1.44
LINC00540-201ENST00000611481 CACNB2Q08289 660 aaPredicted RBP6.04□□□□□ -1.44
LINC00540-201ENST00000611481 EEF1DP3Q658K8 133 aa6.04□□□□□ -1.44
LINC00540-201ENST00000611481 NETO2Q8NC67 525 aa6.04□□□□□ -1.44
LINC00540-201ENST00000611481 ZDHHC15Q96MV8 337 aa6.04□□□□□ -1.44
LINC00540-201ENST00000611481 NOX5Q96PH1 765 aa6.04□□□□□ -1.44
LINC00540-201ENST00000611481 TM9SF2Q99805 663 aa6.04□□□□□ -1.44
LINC00540-201ENST00000611481 C1QTNF3Q9BXJ4 246 aa6.04□□□□□ -1.44
LINC00540-201ENST00000611481 PRO3102Q9H379 93 aa6.04□□□□□ -1.44
LINC00540-201ENST00000611481 NOL6Q9H6R4 1146 aaKnown RBP6.04□□□□□ -1.44
LINC00540-201ENST00000611481 SRRDQ9UH36 339 aa6.04□□□□□ -1.44
LINC00540-201ENST00000611481 DIS3Q9Y2L1 958 aaKnown RBP6.04□□□□□ -1.44
LINC00540-201ENST00000611481 ZNF451Q9Y4E5 1061 aa6.04□□□□□ -1.44
LINC00540-201ENST00000611481 COL5A3P25940 1745 aaPredicted RBP6.04□□□□□ -1.44
LINC00540-201ENST00000611481 SLX4Q8IY92 1834 aa6.04□□□□□ -1.44
LINC00540-201ENST00000611481 CACNA1SQ13698 1873 aa6.03□□□□□ -1.44
LINC00540-201ENST00000611481 COL11A2P13942 1736 aaPredicted RBP6.03□□□□□ -1.44
LINC00540-201ENST00000611481 NRXN2Q9P2S2 1712 aa6.03□□□□□ -1.44
LINC00540-201ENST00000611481 PLATP00750 562 aa6.03□□□□□ -1.44
LINC00540-201ENST00000611481 ZNF20P17024 532 aa6.03□□□□□ -1.44
LINC00540-201ENST00000611481 HOXC9P31274 260 aa6.03□□□□□ -1.44
LINC00540-201ENST00000611481 IARSP41252 1262 aaKnown RBP6.03□□□□□ -1.44
LINC00540-201ENST00000611481 CRKLP46109 303 aaKnown RBP6.03□□□□□ -1.44
LINC00540-201ENST00000611481 AMPHP49418 695 aa6.03□□□□□ -1.44
LINC00540-201ENST00000611481 EIF6P56537 245 aaKnown RBP6.03□□□□□ -1.44
LINC00540-201ENST00000611481 TCEAL1Q15170 157 aa6.03□□□□□ -1.44
LINC00540-201ENST00000611481 CCDC93Q567U6 631 aa6.03□□□□□ -1.44
LINC00540-201ENST00000611481 RCSD1Q6JBY9 416 aa6.03□□□□□ -1.44
LINC00540-201ENST00000611481 KIAA0825Q8IV33 1275 aa6.03□□□□□ -1.44
LINC00540-201ENST00000611481 DPF3Q92784 378 aa6.03□□□□□ -1.44
LINC00540-201ENST00000611481 ZBTB8AQ96BR9 441 aa6.03□□□□□ -1.44
LINC00540-201ENST00000611481 LOXL4Q96JB6 756 aa6.03□□□□□ -1.44
LINC00540-201ENST00000611481 C8orf49Q96NF6 230 aa6.03□□□□□ -1.44
LINC00540-201ENST00000611481 MPHOSPH9Q99550 1183 aa6.03□□□□□ -1.44
LINC00540-201ENST00000611481 SPON2Q9BUD6 331 aa6.03□□□□□ -1.44
LINC00540-201ENST00000611481 KRTAP3-1Q9BYR8 98 aa6.03□□□□□ -1.44
LINC00540-201ENST00000611481 SPTBN5Q9NRC6 3674 aaKnown RBP6.03□□□□□ -1.44
LINC00540-201ENST00000611481 LAMA3Q16787 3333 aa6.02□□□□□ -1.45
LINC00540-201ENST00000611481 CENPJQ9HC77 1338 aaPredicted RBP6.02□□□□□ -1.45
LINC00540-201ENST00000611481 SMARCA5O60264 1052 aaPredicted RBP6.02□□□□□ -1.45
LINC00540-201ENST00000611481 DLK2Q6UY11 383 aa6.02□□□□□ -1.45
LINC00540-201ENST00000611481 SLC16A11Q8NCK7 471 aa6.02□□□□□ -1.45
LINC00540-201ENST00000611481 ADAMTS17Q8TE56 1095 aa6.02□□□□□ -1.45
LINC00540-201ENST00000611481 JDP2Q8WYK2 163 aa6.02□□□□□ -1.45
LINC00540-201ENST00000611481 RNF34Q969K3 372 aa6.02□□□□□ -1.45
LINC00540-201ENST00000611481 FERD3LQ96RJ6 166 aa6.02□□□□□ -1.45
LINC00540-201ENST00000611481 FAM86C1Q9NVL1 165 aa6.02□□□□□ -1.45
LINC00540-201ENST00000611481 MTMR10Q9NXD2 777 aa6.02□□□□□ -1.45
LINC00540-201ENST00000611481 RWDD3Q9Y3V2 267 aa6.02□□□□□ -1.45
LINC00540-201ENST00000611481 MON2Q7Z3U7 1717 aa6.02□□□□□ -1.45
LINC00540-201ENST00000611481 ANKRD31Q8N7Z5 1873 aa6.01□□□□□ -1.45
LINC00540-201ENST00000611481 A0A1W2PPC1 479 aa6.01□□□□□ -1.45
LINC00540-201ENST00000611481 FSHBP01225 129 aa6.01□□□□□ -1.45
LINC00540-201ENST00000611481 RBM10P98175 930 aaKnown RBP6.01□□□□□ -1.45
LINC00540-201ENST00000611481 KIAA2012Q0VF49 1180 aa6.01□□□□□ -1.45
LINC00540-201ENST00000611481 MAP3K12Q12852 859 aa6.01□□□□□ -1.45
LINC00540-201ENST00000611481 CCDC27Q2M243 656 aa6.01□□□□□ -1.45
LINC00540-201ENST00000611481 TBC1D10BQ4KMP7 808 aaPredicted RBP6.01□□□□□ -1.45
LINC00540-201ENST00000611481 OLFM4Q6UX06 510 aa6.01□□□□□ -1.45
LINC00540-201ENST00000611481 LINC00482Q8N8I6 264 aa6.01□□□□□ -1.45
LINC00540-201ENST00000611481 C2orf69Q8N8R5 385 aa6.01□□□□□ -1.45
LINC00540-201ENST00000611481 BRIP1Q9BX63 1249 aa6.01□□□□□ -1.45
LINC00540-201ENST00000611481 GBA2Q9HCG7 927 aaPredicted RBP6.01□□□□□ -1.45
LINC00540-201ENST00000611481 PCDH18Q9HCL0 1135 aa6.01□□□□□ -1.45
LINC00540-201ENST00000611481 ADARB2Q9NS39 739 aaKnown RBP6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms