RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 ZSWIM6Q9HCJ5 1215 aa21.22■□□□□ 0.99
PNKP-213ENST00000599543 CYP46A1Q9Y6A2 500 aa21.22■□□□□ 0.99
PNKP-213ENST00000599543 PSAPP07602 524 aa21.21■□□□□ 0.99
PNKP-213ENST00000599543 LINC00271P0C7V0 271 aa21.21■□□□□ 0.99
PNKP-213ENST00000599543 STAG3L1P0CL83 205 aa21.21■□□□□ 0.99
PNKP-213ENST00000599543 CIITAP33076 1130 aa21.21■□□□□ 0.99
PNKP-213ENST00000599543 EVCP57679 992 aa21.21■□□□□ 0.99
PNKP-213ENST00000599543 LEXMQ3ZCV2 418 aa21.21■□□□□ 0.99
PNKP-213ENST00000599543 TCEAL5Q5H9L2 206 aa21.21■□□□□ 0.99
PNKP-213ENST00000599543 BBXQ8WY36 941 aaPredicted RBP21.21■□□□□ 0.99
PNKP-213ENST00000599543 CLP1Q92989 425 aaKnown RBP21.21■□□□□ 0.99
PNKP-213ENST00000599543 SAMM50Q9Y512 469 aa21.21■□□□□ 0.99
PNKP-213ENST00000599543 PCDHA10Q9Y5I2 948 aa21.21■□□□□ 0.99
PNKP-213ENST00000599543 MAFBQ9Y5Q3 323 aaPredicted RBP21.21■□□□□ 0.99
PNKP-213ENST00000599543 NFX1Q12986 1120 aaKnown RBP21.2■□□□□ 0.98
PNKP-213ENST00000599543 TMEM266Q2M3C6 531 aa21.2■□□□□ 0.98
PNKP-213ENST00000599543 TRMT1LQ7Z2T5 733 aaKnown RBP21.2■□□□□ 0.98
PNKP-213ENST00000599543 RTN4RL1Q86UN2 441 aaPredicted RBP21.2■□□□□ 0.98
PNKP-213ENST00000599543 KIAA0319LQ8IZA0 1049 aa21.2■□□□□ 0.98
PNKP-213ENST00000599543 LMAN2LQ9H0V9 348 aa21.2■□□□□ 0.98
PNKP-213ENST00000599543 SH3GLB2Q9NR46 395 aa21.2■□□□□ 0.98
PNKP-213ENST00000599543 ZBTB42B2RXF5 422 aa21.19■□□□□ 0.98
PNKP-213ENST00000599543 CPLX1O14810 134 aa21.19■□□□□ 0.98
PNKP-213ENST00000599543 RPS6KA5O75582 802 aa21.19■□□□□ 0.98
PNKP-213ENST00000599543 ATP4AP20648 1035 aa21.19■□□□□ 0.98
PNKP-213ENST00000599543 NLRP5P59047 1200 aa21.19■□□□□ 0.98
PNKP-213ENST00000599543 TOB2Q14106 344 aaPredicted RBP21.19■□□□□ 0.98
PNKP-213ENST00000599543 ODR4Q5SWX8 454 aa21.19■□□□□ 0.98
PNKP-213ENST00000599543 EP400NLQ6ZTU2 488 aa21.19■□□□□ 0.98
PNKP-213ENST00000599543 CMTR2Q8IYT2 770 aaKnown RBP21.19■□□□□ 0.98
PNKP-213ENST00000599543 PLVAPQ9BX97 442 aa21.19■□□□□ 0.98
PNKP-213ENST00000599543 C1QTNF1Q9BXJ1 281 aa21.19■□□□□ 0.98
PNKP-213ENST00000599543 GABBR1Q9UBS5 961 aa21.19■□□□□ 0.98
PNKP-213ENST00000599543 LRFN2Q9ULH4 789 aa21.19■□□□□ 0.98
PNKP-213ENST00000599543 CEP131Q9UPN4 1083 aa21.19■□□□□ 0.98
PNKP-213ENST00000599543 FNDC1Q4ZHG4 1894 aaPredicted RBP21.18■□□□□ 0.98
PNKP-213ENST00000599543 WDR64B1ANS9 1081 aa21.18■□□□□ 0.98
PNKP-213ENST00000599543 GRM6O15303 877 aa21.18■□□□□ 0.98
PNKP-213ENST00000599543 C22orf31O95567 290 aa21.18■□□□□ 0.98
PNKP-213ENST00000599543 COL9A1P20849 921 aa21.18■□□□□ 0.98
PNKP-213ENST00000599543 IBSPP21815 317 aaPredicted RBP21.18■□□□□ 0.98
PNKP-213ENST00000599543 SSRP1Q08945 709 aaKnown RBP21.18■□□□□ 0.98
PNKP-213ENST00000599543 FAM43BQ6ZT52 329 aaPredicted RBP21.18■□□□□ 0.98
PNKP-213ENST00000599543 CRIPAKQ8N1N5 446 aa21.18■□□□□ 0.98
PNKP-213ENST00000599543 METTL13Q8N6R0 699 aa21.18■□□□□ 0.98
PNKP-213ENST00000599543 LENG9Q96B70 501 aa21.18■□□□□ 0.98
PNKP-213ENST00000599543 PABPC5Q96DU9 382 aaKnown RBP21.18■□□□□ 0.98
PNKP-213ENST00000599543 FAM167AQ96KS9 214 aa21.18■□□□□ 0.98
PNKP-213ENST00000599543 TM6SF1Q9BZW5 370 aa21.18■□□□□ 0.98
PNKP-213ENST00000599543 TMX1Q9H3N1 280 aa21.18■□□□□ 0.98
PNKP-213ENST00000599543 PDRG1Q9NUG6 133 aa21.18■□□□□ 0.98
PNKP-213ENST00000599543 MRPL42Q9Y6G3 142 aaKnown RBP21.18■□□□□ 0.98
PNKP-213ENST00000599543 DENND3A2RUS2 1198 aa21.17■□□□□ 0.98
PNKP-213ENST00000599543 H3BQ06 376 aaPredicted RBP21.17■□□□□ 0.98
PNKP-213ENST00000599543 USP11P51784 963 aa21.17■□□□□ 0.98
PNKP-213ENST00000599543 KIZQ2M2Z5 673 aa21.17■□□□□ 0.98
PNKP-213ENST00000599543 PAN2Q504Q3 1202 aaKnown RBP21.17■□□□□ 0.98
PNKP-213ENST00000599543 PTCRAQ6ISU1 281 aaPredicted RBP21.17■□□□□ 0.98
PNKP-213ENST00000599543 GADD45GIP1Q8TAE8 222 aaPredicted RBP21.17■□□□□ 0.98
PNKP-213ENST00000599543 NEK9Q8TD19 979 aa21.17■□□□□ 0.98
PNKP-213ENST00000599543 TMEM40Q8WWA1 233 aa21.17■□□□□ 0.98
PNKP-213ENST00000599543 PPP1R16BQ96T49 567 aa21.17■□□□□ 0.98
PNKP-213ENST00000599543 ERVK-5Q9HDB9 667 aa21.17■□□□□ 0.98
PNKP-213ENST00000599543 NOC2LQ9Y3T9 749 aaKnown RBP21.17■□□□□ 0.98
PNKP-213ENST00000599543 C5orf42Q9H799 3197 aa21.17■□□□□ 0.98
PNKP-213ENST00000599543 GPR182O15218 404 aa21.16■□□□□ 0.98
PNKP-213ENST00000599543 MSH4O15457 936 aa21.16■□□□□ 0.98
PNKP-213ENST00000599543 NCK2O43639 380 aa21.16■□□□□ 0.98
PNKP-213ENST00000599543 GAS7O60861 476 aa21.16■□□□□ 0.98
PNKP-213ENST00000599543 CSPG5O95196 566 aa21.16■□□□□ 0.98
PNKP-213ENST00000599543 MMP1P03956 469 aa21.16■□□□□ 0.98
PNKP-213ENST00000599543 SARSP49591 514 aaKnown RBP21.16■□□□□ 0.98
PNKP-213ENST00000599543 PUS10Q3MIT2 529 aaKnown RBP21.16■□□□□ 0.98
PNKP-213ENST00000599543 CPLX2Q6PUV4 134 aaKnown RBP21.16■□□□□ 0.98
PNKP-213ENST00000599543 ZNF274Q96GC6 653 aaPredicted RBP21.16■□□□□ 0.98
PNKP-213ENST00000599543 OSMRQ99650 979 aa21.16■□□□□ 0.98
PNKP-213ENST00000599543 C22orf23Q9BZE7 217 aa21.16■□□□□ 0.98
PNKP-213ENST00000599543 CDHR5Q9HBB8 845 aa21.16■□□□□ 0.98
PNKP-213ENST00000599543 DISC1Q9NRI5 854 aa21.16■□□□□ 0.98
PNKP-213ENST00000599543 RNF216Q9NWF9 866 aaPredicted RBP21.16■□□□□ 0.98
PNKP-213ENST00000599543 CLDND1Q9NY35 253 aa21.16■□□□□ 0.98
PNKP-213ENST00000599543 PCDHA4Q9UN74 947 aa21.16■□□□□ 0.98
PNKP-213ENST00000599543 PCDHB7Q9Y5E2 793 aa21.16■□□□□ 0.98
PNKP-213ENST00000599543 MAGEB2O15479 319 aa21.15■□□□□ 0.98
PNKP-213ENST00000599543 CHMP2AO43633 222 aa21.15■□□□□ 0.98
PNKP-213ENST00000599543 DTNBO60941 627 aa21.15■□□□□ 0.98
PNKP-213ENST00000599543 DEXIO95424 95 aa21.15■□□□□ 0.98
PNKP-213ENST00000599543 VTNP04004 478 aa21.15■□□□□ 0.98
PNKP-213ENST00000599543 IL9P15248 144 aa21.15■□□□□ 0.98
PNKP-213ENST00000599543 CRYBB1P53674 252 aaPredicted RBP21.15■□□□□ 0.98
PNKP-213ENST00000599543 ANAPC15P60006 121 aa21.15■□□□□ 0.98
PNKP-213ENST00000599543 COL19A1Q14993 1142 aa21.15■□□□□ 0.98
PNKP-213ENST00000599543 LRCH2Q5VUJ6 765 aa21.15■□□□□ 0.98
PNKP-213ENST00000599543 TBCKQ8TEA7 893 aa21.15■□□□□ 0.98
PNKP-213ENST00000599543 P2RX5Q93086 422 aa21.15■□□□□ 0.98
PNKP-213ENST00000599543 MAP7D2Q96T17 732 aa21.15■□□□□ 0.98
PNKP-213ENST00000599543 RIT2Q99578 217 aa21.15■□□□□ 0.98
PNKP-213ENST00000599543 ADAM2Q99965 735 aa21.15■□□□□ 0.98
PNKP-213ENST00000599543 TEKT3Q9BXF9 490 aa21.15■□□□□ 0.98
PNKP-213ENST00000599543 ALG13Q9NP73 1137 aaKnown RBP21.15■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms