RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 TRAPPC10P48553 1259 aa18.15■□□□□ 0.5
TRIM28-213ENST00000598355 LPIN1Q14693 890 aa18.15■□□□□ 0.5
TRIM28-213ENST00000598355 CALCRLQ16602 461 aa18.15■□□□□ 0.5
TRIM28-213ENST00000598355 FBXO47Q5MNV8 452 aa18.15■□□□□ 0.5
TRIM28-213ENST00000598355 CKAP2LQ8IYA6 745 aa18.15■□□□□ 0.5
TRIM28-213ENST00000598355 KIAA0319LQ8IZA0 1049 aa18.15■□□□□ 0.5
TRIM28-213ENST00000598355 APBB2Q92870 758 aa18.15■□□□□ 0.5
TRIM28-213ENST00000598355 NIFKQ9BYG3 293 aaKnown RBP18.15■□□□□ 0.5
TRIM28-213ENST00000598355 FAM49AQ9H0Q0 323 aaPredicted RBP18.15■□□□□ 0.5
TRIM28-213ENST00000598355 TMEM60Q9H2L4 133 aa18.15■□□□□ 0.5
TRIM28-213ENST00000598355 YBX2Q9Y2T7 364 aaKnown RBP18.15■□□□□ 0.5
TRIM28-213ENST00000598355 PCDHA11Q9Y5I1 949 aa18.15■□□□□ 0.5
TRIM28-213ENST00000598355 TRANK1O15050 2925 aa18.14■□□□□ 0.49
TRIM28-213ENST00000598355 MAGEB2O15479 319 aa18.14■□□□□ 0.49
TRIM28-213ENST00000598355 GJB2P29033 226 aa18.14■□□□□ 0.49
TRIM28-213ENST00000598355 PSMC5P62195 406 aa18.14■□□□□ 0.49
TRIM28-213ENST00000598355 DEFB103AP81534 67 aa18.14■□□□□ 0.49
TRIM28-213ENST00000598355 IKBKEQ14164 716 aa18.14■□□□□ 0.49
TRIM28-213ENST00000598355 EPHA7Q15375 998 aa18.14■□□□□ 0.49
TRIM28-213ENST00000598355 XKR3Q5GH77 459 aa18.14■□□□□ 0.49
TRIM28-213ENST00000598355 TSHZ1Q6ZSZ6 1077 aa18.14■□□□□ 0.49
TRIM28-213ENST00000598355 HERC6Q8IVU3 1022 aa18.14■□□□□ 0.49
TRIM28-213ENST00000598355 TIFAQ96CG3 184 aa18.14■□□□□ 0.49
TRIM28-213ENST00000598355 GUCD1Q96NT3 240 aa18.14■□□□□ 0.49
TRIM28-213ENST00000598355 IFIH1Q9BYX4 1025 aaKnown RBP18.14■□□□□ 0.49
TRIM28-213ENST00000598355 WRAP73Q9P2S5 460 aaPredicted RBP18.14■□□□□ 0.49
TRIM28-213ENST00000598355 TRPV2Q9Y5S1 764 aa18.14■□□□□ 0.49
TRIM28-213ENST00000598355 NLRC5Q86WI3 1866 aa18.14■□□□□ 0.49
TRIM28-213ENST00000598355 COL4A4P53420 1690 aaPredicted RBP18.13■□□□□ 0.49
TRIM28-213ENST00000598355 IGKV6-21A0A0C4DH24 114 aa18.13■□□□□ 0.49
TRIM28-213ENST00000598355 BAG4O95429 457 aaKnown RBP18.13■□□□□ 0.49
TRIM28-213ENST00000598355 GHRP10912 638 aa18.13■□□□□ 0.49
TRIM28-213ENST00000598355 QARSP47897 775 aaKnown RBP18.13■□□□□ 0.49
TRIM28-213ENST00000598355 IER5Q5VY09 327 aa18.13■□□□□ 0.49
TRIM28-213ENST00000598355 USP38Q8NB14 1042 aa18.13■□□□□ 0.49
TRIM28-213ENST00000598355 BANK1Q8NDB2 785 aa18.13■□□□□ 0.49
TRIM28-213ENST00000598355 SEPT8Q92599 483 aa18.13■□□□□ 0.49
TRIM28-213ENST00000598355 SEMA6BQ9H3T3 888 aa18.13■□□□□ 0.49
TRIM28-213ENST00000598355 NRBP2Q9NSY0 501 aa18.13■□□□□ 0.49
TRIM28-213ENST00000598355 ZSCAN21Q9Y5A6 473 aaPredicted RBP18.13■□□□□ 0.49
TRIM28-213ENST00000598355 RALGAPA2Q2PPJ7 1873 aa18.13■□□□□ 0.49
TRIM28-213ENST00000598355 P4HBP07237 508 aaKnown RBP18.12■□□□□ 0.49
TRIM28-213ENST00000598355 KCNJ6P48051 423 aa18.12■□□□□ 0.49
TRIM28-213ENST00000598355 TOB1P50616 345 aaPredicted RBP18.12■□□□□ 0.49
TRIM28-213ENST00000598355 TTC38Q5R3I4 469 aa18.12■□□□□ 0.49
TRIM28-213ENST00000598355 ANO5Q75V66 913 aa18.12■□□□□ 0.49
TRIM28-213ENST00000598355 C4orf19Q8IY42 314 aa18.12■□□□□ 0.49
TRIM28-213ENST00000598355 LXNQ9BS40 222 aa18.12■□□□□ 0.49
TRIM28-213ENST00000598355 CELF4Q9BZC1 486 aaKnown RBP18.12■□□□□ 0.49
TRIM28-213ENST00000598355 TTC12Q9H892 705 aaPredicted RBP18.12■□□□□ 0.49
TRIM28-213ENST00000598355 AGO3Q9H9G7 860 aaKnown RBP18.12■□□□□ 0.49
TRIM28-213ENST00000598355 PCDHA12Q9UN75 941 aa18.12■□□□□ 0.49
TRIM28-213ENST00000598355 EYSQ5T1H1 3165 aa18.12■□□□□ 0.49
TRIM28-213ENST00000598355 LOC101059915A0A1B0GWI6 518 aaPredicted RBP18.11■□□□□ 0.49
TRIM28-213ENST00000598355 DKC1O60832 514 aaKnown RBP eCLIP18.11■□□□□ 0.49
TRIM28-213ENST00000598355 LYPLA2O95372 231 aa18.11■□□□□ 0.49
TRIM28-213ENST00000598355 GJB5O95377 273 aa18.11■□□□□ 0.49
TRIM28-213ENST00000598355 MCM7P33993 719 aa18.11■□□□□ 0.49
TRIM28-213ENST00000598355 RABGGTBP53611 331 aa18.11■□□□□ 0.49
TRIM28-213ENST00000598355 FAM43BQ6ZT52 329 aaPredicted RBP18.11■□□□□ 0.49
TRIM28-213ENST00000598355 NEK9Q8TD19 979 aa18.11■□□□□ 0.49
TRIM28-213ENST00000598355 HSD17B14Q9BPX1 270 aa18.11■□□□□ 0.49
TRIM28-213ENST00000598355 ZNF576Q9H609 170 aa18.11■□□□□ 0.49
TRIM28-213ENST00000598355 SEPT9Q9UHD8 586 aaPredicted RBP18.11■□□□□ 0.49
TRIM28-213ENST00000598355 MSRAQ9UJ68 235 aa18.11■□□□□ 0.49
TRIM28-213ENST00000598355 SMC3Q9UQE7 1217 aa18.11■□□□□ 0.49
TRIM28-213ENST00000598355 PPME1Q9Y570 386 aa18.11■□□□□ 0.49
TRIM28-213ENST00000598355 MYH15Q9Y2K3 1946 aa18.11■□□□□ 0.49
TRIM28-213ENST00000598355 TMEM150BA6NC51 233 aa18.1■□□□□ 0.49
TRIM28-213ENST00000598355 M0QZ92 97 aa18.1■□□□□ 0.49
TRIM28-213ENST00000598355 GPR32O75388 356 aa18.1■□□□□ 0.49
TRIM28-213ENST00000598355 OR52Z1P0C646 297 aa18.1■□□□□ 0.49
TRIM28-213ENST00000598355 CLCN3P51790 818 aa18.1■□□□□ 0.49
TRIM28-213ENST00000598355 TMEM62Q0P6H9 643 aa18.1■□□□□ 0.49
TRIM28-213ENST00000598355 NCAPH2Q6IBW4 605 aa18.1■□□□□ 0.49
TRIM28-213ENST00000598355 LIN28BQ6ZN17 250 aaKnown RBP eCLIP18.1■□□□□ 0.492e-9■□□□□ 9.1
TRIM28-213ENST00000598355 TRMT1LQ7Z2T5 733 aaKnown RBP18.1■□□□□ 0.49
TRIM28-213ENST00000598355 ZNF710Q8N1W2 664 aa18.1■□□□□ 0.49
TRIM28-213ENST00000598355 C4orf32Q8N8J7 132 aa18.1■□□□□ 0.49
TRIM28-213ENST00000598355 TMEM40Q8WWA1 233 aa18.1■□□□□ 0.49
TRIM28-213ENST00000598355 LINC01599Q8WXQ3 324 aa18.1■□□□□ 0.49
TRIM28-213ENST00000598355 RGL1Q9NZL6 768 aa18.1■□□□□ 0.49
TRIM28-213ENST00000598355 NOL7Q9UMY1 257 aaKnown RBP18.1■□□□□ 0.49
TRIM28-213ENST00000598355 KIAA1671Q9BY89 1806 aa18.09■□□□□ 0.49
TRIM28-213ENST00000598355 POTEMA6NI47 508 aa18.09■□□□□ 0.49
TRIM28-213ENST00000598355 MYOGP15173 224 aa18.09■□□□□ 0.49
TRIM28-213ENST00000598355 HTRA4P83105 476 aaPredicted RBP18.09■□□□□ 0.49
TRIM28-213ENST00000598355 TBC1D8BQ0IIM8 1120 aa18.09■□□□□ 0.49
TRIM28-213ENST00000598355 GNL2Q13823 731 aaKnown RBP18.09■□□□□ 0.49
TRIM28-213ENST00000598355 EFCAB12Q6NXP0 572 aa18.09■□□□□ 0.49
TRIM28-213ENST00000598355 SNX21Q969T3 373 aa18.09■□□□□ 0.49
TRIM28-213ENST00000598355 INTS4Q96HW7 963 aaKnown RBP18.09■□□□□ 0.49
TRIM28-213ENST00000598355 DYDC2Q96IM9 177 aa18.09■□□□□ 0.49
TRIM28-213ENST00000598355 EIF2AK1Q9BQI3 630 aaKnown RBP18.09■□□□□ 0.49
TRIM28-213ENST00000598355 NKX2-4Q9H2Z4 354 aa18.09■□□□□ 0.49
TRIM28-213ENST00000598355 ZSWIM4Q9H7M6 989 aa18.09■□□□□ 0.49
TRIM28-213ENST00000598355 CYP26B1Q9NR63 512 aa18.09■□□□□ 0.49
TRIM28-213ENST00000598355 STXBP5LQ9Y2K9 1186 aa18.09■□□□□ 0.49
TRIM28-213ENST00000598355 FNDC1Q4ZHG4 1894 aaPredicted RBP18.09■□□□□ 0.49
TRIM28-213ENST00000598355 MARCH6O60337 910 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms