RNA–Protein interactions for RNA: ENST00000598309.1

USHBP1-208, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 4

Gene USHBP1, Length 549 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-208ENST00000598309 UGCGQ16739 394 aa18.77■□□□□ 0.6
USHBP1-208ENST00000598309 TMCO2Q7Z6W1 182 aaPredicted RBP18.77■□□□□ 0.6
USHBP1-208ENST00000598309 KIAA0319LQ8IZA0 1049 aa18.77■□□□□ 0.6
USHBP1-208ENST00000598309 MYOCDQ8IZQ8 938 aa18.77■□□□□ 0.6
USHBP1-208ENST00000598309 MAFAQ8NHW3 353 aaPredicted RBP18.77■□□□□ 0.6
USHBP1-208ENST00000598309 CELF4Q9BZC1 486 aaKnown RBP18.77■□□□□ 0.6
USHBP1-208ENST00000598309 NRBP2Q9NSY0 501 aa18.77■□□□□ 0.6
USHBP1-208ENST00000598309 VAV3Q9UKW4 847 aa18.77■□□□□ 0.6
USHBP1-208ENST00000598309 MYH9P35579 1960 aaKnown RBP18.77■□□□□ 0.59
USHBP1-208ENST00000598309 CDH23Q9H251 3354 aa18.76■□□□□ 0.59
USHBP1-208ENST00000598309 LOC101059915A0A1B0GWI6 518 aaPredicted RBP18.76■□□□□ 0.59
USHBP1-208ENST00000598309 FAM205CA6NFA0 338 aa18.76■□□□□ 0.59
USHBP1-208ENST00000598309 BTBD18B2RXH4 712 aa18.76■□□□□ 0.59
USHBP1-208ENST00000598309 SAFBQ15424 915 aaKnown RBP eCLIP18.76■□□□□ 0.59
USHBP1-208ENST00000598309 C8orf76Q96K31 380 aa18.76■□□□□ 0.59
USHBP1-208ENST00000598309 CHD9Q3L8U1 2897 aa18.75■□□□□ 0.59
USHBP1-208ENST00000598309 FOSBP53539 338 aa18.75■□□□□ 0.59
USHBP1-208ENST00000598309 HTRA4P83105 476 aaPredicted RBP18.75■□□□□ 0.59
USHBP1-208ENST00000598309 TMEM62Q0P6H9 643 aa18.75■□□□□ 0.59
USHBP1-208ENST00000598309 POTEDQ86YR6 584 aa18.75■□□□□ 0.59
USHBP1-208ENST00000598309 SLFN12Q8IYM2 578 aa18.75■□□□□ 0.59
USHBP1-208ENST00000598309 ZNF710Q8N1W2 664 aa18.75■□□□□ 0.59
USHBP1-208ENST00000598309 HAS1Q92839 578 aa18.75■□□□□ 0.59
USHBP1-208ENST00000598309 TOP1MTQ969P6 601 aa18.75■□□□□ 0.59
USHBP1-208ENST00000598309 FTHL17Q9BXU8 183 aa18.75■□□□□ 0.59
USHBP1-208ENST00000598309 AGO3Q9H9G7 860 aaKnown RBP18.75■□□□□ 0.59
USHBP1-208ENST00000598309 INSL6Q9Y581 213 aa18.75■□□□□ 0.59
USHBP1-208ENST00000598309 COL4A6Q14031 1691 aa18.75■□□□□ 0.59
USHBP1-208ENST00000598309 COL6A3P12111 3177 aa18.75■□□□□ 0.59
USHBP1-208ENST00000598309 LCHNA4D1U4 455 aa18.74■□□□□ 0.59
USHBP1-208ENST00000598309 ARHGEF15O94989 841 aa18.74■□□□□ 0.59
USHBP1-208ENST00000598309 PSMC5P62195 406 aa18.74■□□□□ 0.59
USHBP1-208ENST00000598309 XKR3Q5GH77 459 aa18.74■□□□□ 0.59
USHBP1-208ENST00000598309 TRMT1LQ7Z2T5 733 aaKnown RBP18.74■□□□□ 0.59
USHBP1-208ENST00000598309 LINC01465Q8N7H1 131 aa18.74■□□□□ 0.59
USHBP1-208ENST00000598309 SP7Q8TDD2 431 aaPredicted RBP18.74■□□□□ 0.59
USHBP1-208ENST00000598309 TBC1D32Q96NH3 1257 aa18.74■□□□□ 0.59
USHBP1-208ENST00000598309 MAP7D2Q96T17 732 aa18.74■□□□□ 0.59
USHBP1-208ENST00000598309 NIFKQ9BYG3 293 aaKnown RBP18.74■□□□□ 0.59
USHBP1-208ENST00000598309 RBAK-RBAKDNI3L0D1 243 aa18.73■□□□□ 0.59
USHBP1-208ENST00000598309 EML1O00423 815 aa18.73■□□□□ 0.59
USHBP1-208ENST00000598309 MARCH6O60337 910 aa18.73■□□□□ 0.59
USHBP1-208ENST00000598309 DKC1O60832 514 aaKnown RBP eCLIP18.73■□□□□ 0.59
USHBP1-208ENST00000598309 BAG4O95429 457 aaKnown RBP18.73■□□□□ 0.59
USHBP1-208ENST00000598309 TMOD1P28289 359 aa18.73■□□□□ 0.59
USHBP1-208ENST00000598309 CD52P31358 61 aa18.73■□□□□ 0.59
USHBP1-208ENST00000598309 PAK2Q13177 524 aa18.73■□□□□ 0.59
USHBP1-208ENST00000598309 ADGRE1Q14246 886 aa18.73■□□□□ 0.59
USHBP1-208ENST00000598309 TARBP2Q15633 366 aaKnown RBP18.73■□□□□ 0.59
USHBP1-208ENST00000598309 FAM117BQ6P1L5 589 aa18.73■□□□□ 0.59
USHBP1-208ENST00000598309 METTL13Q8N6R0 699 aa18.73■□□□□ 0.59
USHBP1-208ENST00000598309 FAM184AQ8NB25 1140 aa18.73■□□□□ 0.59
USHBP1-208ENST00000598309 FBXO18Q8NFZ0 1043 aa18.73■□□□□ 0.59
USHBP1-208ENST00000598309 FOXP1Q9H334 677 aaPredicted RBP18.73■□□□□ 0.59
USHBP1-208ENST00000598309 SEPT9Q9UHD8 586 aaPredicted RBP18.73■□□□□ 0.59
USHBP1-208ENST00000598309 WDR81Q562E7 1941 aa18.72■□□□□ 0.59
USHBP1-208ENST00000598309 STBD1O95210 358 aa18.72■□□□□ 0.59
USHBP1-208ENST00000598309 QARSP47897 775 aaKnown RBP18.72■□□□□ 0.59
USHBP1-208ENST00000598309 TBC1D8BQ0IIM8 1120 aa18.72■□□□□ 0.59
USHBP1-208ENST00000598309 ODR4Q5SWX8 454 aa18.72■□□□□ 0.59
USHBP1-208ENST00000598309 BANK1Q8NDB2 785 aa18.72■□□□□ 0.59
USHBP1-208ENST00000598309 SLC17A8Q8NDX2 589 aa18.72■□□□□ 0.59
USHBP1-208ENST00000598309 PADI3Q9ULW8 664 aa18.72■□□□□ 0.59
USHBP1-208ENST00000598309 LINC01553A4QN01 128 aa18.71■□□□□ 0.59
USHBP1-208ENST00000598309 ENPP3O14638 875 aa18.71■□□□□ 0.59
USHBP1-208ENST00000598309 NEMFO60524 1076 aa18.71■□□□□ 0.59
USHBP1-208ENST00000598309 P4HBP07237 508 aaKnown RBP18.71■□□□□ 0.59
USHBP1-208ENST00000598309 POU3F3P20264 500 aaPredicted RBP18.71■□□□□ 0.59
USHBP1-208ENST00000598309 MCM2P49736 904 aa18.71■□□□□ 0.59
USHBP1-208ENST00000598309 CLCN3P51790 818 aa18.71■□□□□ 0.59
USHBP1-208ENST00000598309 CRYBB1P53674 252 aaPredicted RBP18.71■□□□□ 0.59
USHBP1-208ENST00000598309 ERVK-21P61565 698 aa18.71■□□□□ 0.59
USHBP1-208ENST00000598309 GUCY1B3Q02153 619 aa18.71■□□□□ 0.59
USHBP1-208ENST00000598309 SPIRE1Q08AE8 756 aa18.71■□□□□ 0.59
USHBP1-208ENST00000598309 EPHA7Q15375 998 aa18.71■□□□□ 0.59
USHBP1-208ENST00000598309 CALCRLQ16602 461 aa18.71■□□□□ 0.59
USHBP1-208ENST00000598309 EFCAB12Q6NXP0 572 aa18.71■□□□□ 0.59
USHBP1-208ENST00000598309 LINC01599Q8WXQ3 324 aa18.71■□□□□ 0.59
USHBP1-208ENST00000598309 ARNTL2Q8WYA1 636 aa18.71■□□□□ 0.59
USHBP1-208ENST00000598309 TGS1Q96RS0 853 aaKnown RBP18.71■□□□□ 0.59
USHBP1-208ENST00000598309 YME1L1Q96TA2 773 aa18.71■□□□□ 0.59
USHBP1-208ENST00000598309 TSPYL2Q9H2G4 693 aaPredicted RBP18.71■□□□□ 0.59
USHBP1-208ENST00000598309 GINS2Q9Y248 185 aa18.71■□□□□ 0.59
USHBP1-208ENST00000598309 KIF3AQ9Y496 699 aa18.71■□□□□ 0.59
USHBP1-208ENST00000598309 PPME1Q9Y570 386 aa18.71■□□□□ 0.59
USHBP1-208ENST00000598309 GPR32O75388 356 aa18.7■□□□□ 0.58
USHBP1-208ENST00000598309 RPS6KA5O75582 802 aa18.7■□□□□ 0.58
USHBP1-208ENST00000598309 VTNP04004 478 aa18.7■□□□□ 0.58
USHBP1-208ENST00000598309 ORC2Q13416 577 aaPredicted RBP18.7■□□□□ 0.58
USHBP1-208ENST00000598309 MYO9BQ13459 2157 aa18.7■□□□□ 0.58
USHBP1-208ENST00000598309 MTERF2Q49AM1 385 aa18.7■□□□□ 0.58
USHBP1-208ENST00000598309 LRRC71Q8N4P6 559 aa18.7■□□□□ 0.58
USHBP1-208ENST00000598309 TMEM40Q8WWA1 233 aa18.7■□□□□ 0.58
USHBP1-208ENST00000598309 CEP89Q96ST8 783 aa18.7■□□□□ 0.58
USHBP1-208ENST00000598309 CERS4Q9HA82 394 aa18.7■□□□□ 0.58
USHBP1-208ENST00000598309 ERVK-5Q9HDB9 667 aa18.7■□□□□ 0.58
USHBP1-208ENST00000598309 AKT3Q9Y243 479 aa18.7■□□□□ 0.58
USHBP1-208ENST00000598309 CHD7Q9P2D1 2997 aa18.7■□□□□ 0.58
USHBP1-208ENST00000598309 IGKV6-21A0A0C4DH24 114 aa18.69■□□□□ 0.58
USHBP1-208ENST00000598309 EPOPA6NHQ4 379 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms