RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 PPP1R16BQ96T49 567 aa12.44□□□□□ -0.42
LIG1-211ENST00000596457 EIF2AK1Q9BQI3 630 aaKnown RBP12.44□□□□□ -0.42
LIG1-211ENST00000596457 LOXHD1Q8IVV2 1947 aa12.44□□□□□ -0.42
LIG1-211ENST00000596457 EYSQ5T1H1 3165 aa12.44□□□□□ -0.42
LIG1-211ENST00000596457 COL1A2P08123 1366 aa12.43□□□□□ -0.42
LIG1-211ENST00000596457 A0A087WWV3 80 aa12.43□□□□□ -0.42
LIG1-211ENST00000596457 MBLAC1A4D2B0 266 aaPredicted RBP12.43□□□□□ -0.42
LIG1-211ENST00000596457 STX6O43752 255 aa12.43□□□□□ -0.42
LIG1-211ENST00000596457 DKC1O60832 514 aaKnown RBP eCLIP12.43□□□□□ -0.42
LIG1-211ENST00000596457 RFC2P35250 354 aa12.43□□□□□ -0.42
LIG1-211ENST00000596457 QARSP47897 775 aaKnown RBP12.43□□□□□ -0.42
LIG1-211ENST00000596457 SPIRE1Q08AE8 756 aa12.43□□□□□ -0.42
LIG1-211ENST00000596457 ORC2Q13416 577 aaPredicted RBP12.43□□□□□ -0.42
LIG1-211ENST00000596457 XKR3Q5GH77 459 aa12.43□□□□□ -0.42
LIG1-211ENST00000596457 PLA2G4FQ68DD2 849 aa12.43□□□□□ -0.42
LIG1-211ENST00000596457 TAF2Q6P1X5 1199 aa12.43□□□□□ -0.42
LIG1-211ENST00000596457 PSRC1Q6PGN9 363 aaPredicted RBP12.43□□□□□ -0.42
LIG1-211ENST00000596457 LXNQ9BS40 222 aa12.43□□□□□ -0.42
LIG1-211ENST00000596457 SUGCTQ9HAC7 445 aa12.43□□□□□ -0.42
LIG1-211ENST00000596457 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.43□□□□□ -0.42
LIG1-211ENST00000596457 CEP131Q9UPN4 1083 aa12.43□□□□□ -0.42
LIG1-211ENST00000596457 PCDHA2Q9Y5H9 948 aa12.43□□□□□ -0.42
LIG1-211ENST00000596457 DNAH12Q6ZR08 3092 aa12.43□□□□□ -0.42
LIG1-211ENST00000596457 TMEM265A0A087WTH1 108 aa12.42□□□□□ -0.42
LIG1-211ENST00000596457 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.42□□□□□ -0.42
LIG1-211ENST00000596457 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.42□□□□□ -0.42
LIG1-211ENST00000596457 ZBTB42B2RXF5 422 aa12.42□□□□□ -0.42
LIG1-211ENST00000596457 M0QZ92 97 aa12.42□□□□□ -0.42
LIG1-211ENST00000596457 NBNO60934 754 aa12.42□□□□□ -0.42
LIG1-211ENST00000596457 ACTN1P12814 892 aa12.42□□□□□ -0.42
LIG1-211ENST00000596457 RBL2Q08999 1139 aa12.42□□□□□ -0.42
LIG1-211ENST00000596457 TBC1D8BQ0IIM8 1120 aa12.42□□□□□ -0.42
LIG1-211ENST00000596457 ZNF697Q5TEC3 545 aa12.42□□□□□ -0.42
LIG1-211ENST00000596457 EFCAB12Q6NXP0 572 aa12.42□□□□□ -0.42
LIG1-211ENST00000596457 FAM173BQ6P4H8 233 aa12.42□□□□□ -0.42
LIG1-211ENST00000596457 BRAPQ7Z569 592 aa12.42□□□□□ -0.42
LIG1-211ENST00000596457 LRRC71Q8N4P6 559 aa12.42□□□□□ -0.42
LIG1-211ENST00000596457 C4orf32Q8N8J7 132 aa12.42□□□□□ -0.42
LIG1-211ENST00000596457 BMP2KQ9NSY1 1161 aaPredicted RBP12.42□□□□□ -0.42
LIG1-211ENST00000596457 WRAP73Q9P2S5 460 aaPredicted RBP12.42□□□□□ -0.42
LIG1-211ENST00000596457 GINS2Q9Y248 185 aa12.42□□□□□ -0.42
LIG1-211ENST00000596457 CDY2AQ9Y6F7 541 aa12.42□□□□□ -0.42
LIG1-211ENST00000596457 SIP14410 1827 aa12.41□□□□□ -0.42
LIG1-211ENST00000596457 SMIM35A0A1B0GVV1 85 aa12.41□□□□□ -0.42
LIG1-211ENST00000596457 ZBTB39O15060 712 aa12.41□□□□□ -0.42
LIG1-211ENST00000596457 SLITRK3O94933 977 aa12.41□□□□□ -0.42
LIG1-211ENST00000596457 STBD1O95210 358 aa12.41□□□□□ -0.42
LIG1-211ENST00000596457 C22orf31O95567 290 aa12.41□□□□□ -0.42
LIG1-211ENST00000596457 CHRNA1P02708 482 aa12.41□□□□□ -0.42
LIG1-211ENST00000596457 CLCN3P51790 818 aa12.41□□□□□ -0.42
LIG1-211ENST00000596457 NPEPPSP55786 919 aa12.41□□□□□ -0.42
LIG1-211ENST00000596457 MRPS6P82932 125 aaKnown RBP12.41□□□□□ -0.42
LIG1-211ENST00000596457 CEBPZQ03701 1054 aaKnown RBP12.41□□□□□ -0.42
LIG1-211ENST00000596457 GPNMBQ14956 572 aa12.41□□□□□ -0.42
LIG1-211ENST00000596457 XKR9Q5GH70 373 aa12.41□□□□□ -0.42
LIG1-211ENST00000596457 TRAF7Q6Q0C0 670 aa12.41□□□□□ -0.42
LIG1-211ENST00000596457 DTHD1Q6ZMT9 781 aa12.41□□□□□ -0.42
LIG1-211ENST00000596457 ERMNQ8TAM6 284 aa12.41□□□□□ -0.42
LIG1-211ENST00000596457 PRUNE2Q8WUY3 3088 aa12.41□□□□□ -0.42
LIG1-211ENST00000596457 ZNF668Q96K58 619 aaPredicted RBP12.41□□□□□ -0.42
LIG1-211ENST00000596457 CEP170P1Q96L14 293 aa12.41□□□□□ -0.42
LIG1-211ENST00000596457 CCDC43Q96MW1 224 aaKnown RBP12.41□□□□□ -0.42
LIG1-211ENST00000596457 NIFKQ9BYG3 293 aaKnown RBP12.41□□□□□ -0.42
LIG1-211ENST00000596457 OSBPL7Q9BZF2 842 aa12.41□□□□□ -0.42
LIG1-211ENST00000596457 MTIF3Q9H2K0 278 aaKnown RBP12.41□□□□□ -0.42
LIG1-211ENST00000596457 ZSWIM4Q9H7M6 989 aa12.41□□□□□ -0.42
LIG1-211ENST00000596457 LRWD1Q9UFC0 647 aa12.41□□□□□ -0.42
LIG1-211ENST00000596457 MTMR6Q9Y217 621 aa12.41□□□□□ -0.42
LIG1-211ENST00000596457 AKT3Q9Y243 479 aa12.41□□□□□ -0.42
LIG1-211ENST00000596457 ARID2Q68CP9 1835 aa12.41□□□□□ -0.42
LIG1-211ENST00000596457 MYH15Q9Y2K3 1946 aa12.41□□□□□ -0.42
LIG1-211ENST00000596457 MAGEB2O15479 319 aa12.4□□□□□ -0.42
LIG1-211ENST00000596457 CAND2O75155 1236 aa12.4□□□□□ -0.42
LIG1-211ENST00000596457 PARNO95453 639 aaKnown RBP12.4□□□□□ -0.42
LIG1-211ENST00000596457 VTNP04004 478 aa12.4□□□□□ -0.42
LIG1-211ENST00000596457 PFKMP08237 780 aa12.4□□□□□ -0.42
LIG1-211ENST00000596457 GHRP10912 638 aa12.4□□□□□ -0.42
LIG1-211ENST00000596457 TMOD1P28289 359 aa12.4□□□□□ -0.42
LIG1-211ENST00000596457 YWHABP31946 246 aaKnown RBP12.4□□□□□ -0.42
LIG1-211ENST00000596457 CCT6AP40227 531 aaKnown RBP12.4□□□□□ -0.42
LIG1-211ENST00000596457 RESTQ13127 1097 aa12.4□□□□□ -0.42
LIG1-211ENST00000596457 BECN1Q14457 450 aa12.4□□□□□ -0.42
LIG1-211ENST00000596457 MBTPS1Q14703 1052 aa12.4□□□□□ -0.42
LIG1-211ENST00000596457 SF3A1Q15459 793 aaKnown RBP12.4□□□□□ -0.42
LIG1-211ENST00000596457 ZRSR1Q15695 479 aaKnown RBP12.4□□□□□ -0.42
LIG1-211ENST00000596457 FOXD4L6Q3SYB3 417 aaPredicted RBP12.4□□□□□ -0.42
LIG1-211ENST00000596457 IER5Q5VY09 327 aa12.4□□□□□ -0.42
LIG1-211ENST00000596457 FOXD4L3Q6VB84 417 aaPredicted RBP12.4□□□□□ -0.42
LIG1-211ENST00000596457 ANO5Q75V66 913 aa12.4□□□□□ -0.42
LIG1-211ENST00000596457 OTUD6AQ7L8S5 288 aa12.4□□□□□ -0.42
LIG1-211ENST00000596457 C4orf19Q8IY42 314 aa12.4□□□□□ -0.42
LIG1-211ENST00000596457 KIAA0319LQ8IZA0 1049 aa12.4□□□□□ -0.42
LIG1-211ENST00000596457 ZNF579Q8NAF0 562 aaKnown RBP12.4□□□□□ -0.42
LIG1-211ENST00000596457 PIGOQ8TEQ8 1089 aa12.4□□□□□ -0.42
LIG1-211ENST00000596457 HERVK_113Q902F9 699 aa12.4□□□□□ -0.42
LIG1-211ENST00000596457 VWCEQ96DN2 955 aa12.4□□□□□ -0.42
LIG1-211ENST00000596457 CXXC1Q9P0U4 656 aaPredicted RBP12.4□□□□□ -0.42
LIG1-211ENST00000596457 TRPV2Q9Y5S1 764 aa12.4□□□□□ -0.42
LIG1-211ENST00000596457 VWA3AA6NCI4 1184 aa12.39□□□□□ -0.43
LIG1-211ENST00000596457 GRXCR1A8MXD5 290 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms