RNA–Protein interactions for RNA: ENST00000589285.1

ZNF540-207, Transcript of zinc finger protein 540, humanhuman

Gene ZNF540, Length 3,106 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-207ENST00000589285 CNNM4Q6P4Q7 775 aa4.2□□□□□ -1.74
ZNF540-207ENST00000589285 CD300LDQ6UXZ3 194 aa4.2□□□□□ -1.74
ZNF540-207ENST00000589285 MCM10Q7L590 875 aa4.2□□□□□ -1.74
ZNF540-207ENST00000589285 ZDHHC14Q8IZN3 488 aa4.2□□□□□ -1.74
ZNF540-207ENST00000589285 TSR2Q969E8 191 aaKnown RBP4.2□□□□□ -1.74
ZNF540-207ENST00000589285 ZNF891A8MT65 544 aaPredicted RBP4.2□□□□□ -1.74
ZNF540-207ENST00000589285 PAX4O43316 350 aa4.2□□□□□ -1.74
ZNF540-207ENST00000589285 PLIN1O60240 522 aa4.2□□□□□ -1.74
ZNF540-207ENST00000589285 CPP00450 1065 aa4.2□□□□□ -1.74
ZNF540-207ENST00000589285 NAT2P11245 290 aa4.2□□□□□ -1.74
ZNF540-207ENST00000589285 PNLIPP16233 465 aa4.2□□□□□ -1.74
ZNF540-207ENST00000589285 TMC5Q6UXY8 1006 aa4.2□□□□□ -1.74
ZNF540-207ENST00000589285 SMARCC2Q8TAQ2 1214 aa4.2□□□□□ -1.74
ZNF540-207ENST00000589285 THAP3Q8WTV1 239 aaPredicted RBP4.2□□□□□ -1.74
ZNF540-207ENST00000589285 PPIL4Q8WUA2 492 aaKnown RBP eCLIP4.2□□□□□ -1.74
ZNF540-207ENST00000589285 SGSM3Q96HU1 749 aa4.2□□□□□ -1.74
ZNF540-207ENST00000589285 MMP19Q99542 508 aa4.2□□□□□ -1.74
ZNF540-207ENST00000589285 NALCNQ8IZF0 1738 aa4.2□□□□□ -1.74
ZNF540-207ENST00000589285 MAPK8IP3Q9UPT6 1336 aa4.2□□□□□ -1.74
ZNF540-207ENST00000589285 C1orf167Q5SNV9 1468 aa4.2□□□□□ -1.74
ZNF540-207ENST00000589285 ABCC6O95255 1503 aa4.2□□□□□ -1.74
ZNF540-207ENST00000589285 KIAA0232Q92628 1395 aa4.2□□□□□ -1.74
ZNF540-207ENST00000589285 IQCA1LA6NCM1 817 aa4.19□□□□□ -1.74
ZNF540-207ENST00000589285 DNAJC8O75937 253 aaPredicted RBP4.19□□□□□ -1.74
ZNF540-207ENST00000589285 AMY2AP04746 511 aa4.19□□□□□ -1.74
ZNF540-207ENST00000589285 ASGR2P07307 311 aa4.19□□□□□ -1.74
ZNF540-207ENST00000589285 GNAT1P11488 350 aa4.19□□□□□ -1.74
ZNF540-207ENST00000589285 AMY2BP19961 511 aa4.19□□□□□ -1.74
ZNF540-207ENST00000589285 ERVFRD-1P60508 538 aa4.19□□□□□ -1.74
ZNF540-207ENST00000589285 LSAMPQ13449 338 aa4.19□□□□□ -1.74
ZNF540-207ENST00000589285 EIF4A2Q14240 407 aaKnown RBP4.19□□□□□ -1.74
ZNF540-207ENST00000589285 SCUBE1Q8IWY4 988 aa4.19□□□□□ -1.74
ZNF540-207ENST00000589285 TCP11L2Q8N4U5 519 aa4.19□□□□□ -1.74
ZNF540-207ENST00000589285 ALG3Q92685 438 aa4.19□□□□□ -1.74
ZNF540-207ENST00000589285 SLC6A17Q9H1V8 727 aa4.19□□□□□ -1.74
ZNF540-207ENST00000589285 EPN3Q9H201 632 aa4.19□□□□□ -1.74
ZNF540-207ENST00000589285 ZNF552Q9H707 407 aaPredicted RBP4.19□□□□□ -1.74
ZNF540-207ENST00000589285 GPR27Q9NS67 375 aa4.19□□□□□ -1.74
ZNF540-207ENST00000589285 PCDHA5Q9Y5H7 936 aa4.19□□□□□ -1.74
ZNF540-207ENST00000589285 TECPR2O15040 1411 aa4.19□□□□□ -1.74
ZNF540-207ENST00000589285 PIP4K2AP48426 406 aaPredicted RBP4.19□□□□□ -1.74
ZNF540-207ENST00000589285 KRT24Q2M2I5 525 aa4.19□□□□□ -1.74
ZNF540-207ENST00000589285 ARHGAP36Q6ZRI8 547 aa4.19□□□□□ -1.74
ZNF540-207ENST00000589285 LILRA2Q8N149 483 aa4.19□□□□□ -1.74
ZNF540-207ENST00000589285 PTPRN2Q92932 1015 aa4.19□□□□□ -1.74
ZNF540-207ENST00000589285 ARMC5Q96C12 935 aa4.19□□□□□ -1.74
ZNF540-207ENST00000589285 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP4.19□□□□□ -1.74
ZNF540-207ENST00000589285 SMG5Q9UPR3 1016 aaKnown RBP4.19□□□□□ -1.74
ZNF540-207ENST00000589285 USP6P35125 1406 aa4.19□□□□□ -1.74
ZNF540-207ENST00000589285 TCRBV16S1A1N1A0A5B0 115 aa4.19□□□□□ -1.74
ZNF540-207ENST00000589285 CCDC66A2RUB6 948 aa4.19□□□□□ -1.74
ZNF540-207ENST00000589285 GLRX3O76003 335 aaKnown RBP4.19□□□□□ -1.74
ZNF540-207ENST00000589285 CYBBP04839 570 aa4.19□□□□□ -1.74
ZNF540-207ENST00000589285 RIPK4P57078 832 aa4.19□□□□□ -1.74
ZNF540-207ENST00000589285 PCBP1Q15365 356 aaKnown RBP eCLIP4.19□□□□□ -1.74
ZNF540-207ENST00000589285 PAQR3Q6TCH7 311 aa4.19□□□□□ -1.74
ZNF540-207ENST00000589285 NGEFQ8N5V2 710 aa4.19□□□□□ -1.74
ZNF540-207ENST00000589285 ZBTB8AQ96BR9 441 aa4.19□□□□□ -1.74
ZNF540-207ENST00000589285 GOLGA2P5Q9HBQ8 144 aa4.19□□□□□ -1.74
ZNF540-207ENST00000589285 SMURF1Q9HCE7 757 aa4.19□□□□□ -1.74
ZNF540-207ENST00000589285 MYOTQ9UBF9 498 aa4.19□□□□□ -1.74
ZNF540-207ENST00000589285 NUDCQ9Y266 331 aa4.19□□□□□ -1.74
ZNF540-207ENST00000589285 ABCA3Q99758 1704 aa4.19□□□□□ -1.74
ZNF540-207ENST00000589285 DLC1Q96QB1 1528 aa4.19□□□□□ -1.74
ZNF540-207ENST00000589285 CD163L1Q9NR16 1453 aa4.18□□□□□ -1.74
ZNF540-207ENST00000589285 KIAA1210Q9ULL0 1709 aa4.18□□□□□ -1.74
ZNF540-207ENST00000589285 FAM90A27PA6NNH2 459 aa4.18□□□□□ -1.74
ZNF540-207ENST00000589285 HOXC9P31274 260 aa4.18□□□□□ -1.74
ZNF540-207ENST00000589285 KCNAB2Q13303 367 aa4.18□□□□□ -1.74
ZNF540-207ENST00000589285 PABPC4Q13310 644 aaKnown RBP eCLIP4.18□□□□□ -1.74
ZNF540-207ENST00000589285 FRAT1Q92837 279 aaPredicted RBP4.18□□□□□ -1.74
ZNF540-207ENST00000589285 ERCC4Q92889 916 aaPredicted RBP4.18□□□□□ -1.74
ZNF540-207ENST00000589285 MAGEL2Q9UJ55 1249 aa4.18□□□□□ -1.74
ZNF540-207ENST00000589285 EDARQ9UNE0 448 aa4.18□□□□□ -1.74
ZNF540-207ENST00000589285 MYO1BO43795 1136 aa4.18□□□□□ -1.74
ZNF540-207ENST00000589285 PTX3P26022 381 aaPredicted RBP4.18□□□□□ -1.74
ZNF540-207ENST00000589285 MC4RP32245 332 aa4.18□□□□□ -1.74
ZNF540-207ENST00000589285 RBM6P78332 1123 aaKnown RBP4.18□□□□□ -1.74
ZNF540-207ENST00000589285 NFE2L2Q16236 605 aa4.18□□□□□ -1.74
ZNF540-207ENST00000589285 CMIPQ8IY22 773 aa4.18□□□□□ -1.74
ZNF540-207ENST00000589285 MZB1Q8WU39 189 aa4.18□□□□□ -1.74
ZNF540-207ENST00000589285 DCAF4Q8WV16 495 aa4.18□□□□□ -1.74
ZNF540-207ENST00000589285 PWWP2AQ96N64 755 aa4.18□□□□□ -1.74
ZNF540-207ENST00000589285 SLC39A2Q9NP94 309 aa4.18□□□□□ -1.74
ZNF540-207ENST00000589285 QSER1Q2KHR3 1735 aa4.18□□□□□ -1.74
ZNF540-207ENST00000589285 TCRBV5S2A0A599 114 aa4.17□□□□□ -1.74
ZNF540-207ENST00000589285 ACOT7O00154 380 aa4.17□□□□□ -1.74
ZNF540-207ENST00000589285 OPA1O60313 960 aa4.17□□□□□ -1.74
ZNF540-207ENST00000589285 GLRBP48167 497 aa4.17□□□□□ -1.74
ZNF540-207ENST00000589285 TUSC3Q13454 348 aa4.17□□□□□ -1.74
ZNF540-207ENST00000589285 SEPT7Q16181 437 aaKnown RBP4.17□□□□□ -1.74
ZNF540-207ENST00000589285 DALRD3Q5D0E6 543 aaKnown RBP4.17□□□□□ -1.74
ZNF540-207ENST00000589285 LCNL1Q6ZST4 164 aa4.17□□□□□ -1.74
ZNF540-207ENST00000589285 CABP7Q86V35 215 aa4.17□□□□□ -1.74
ZNF540-207ENST00000589285 IPO9Q96P70 1041 aaKnown RBP4.17□□□□□ -1.74
ZNF540-207ENST00000589285 GORASP1Q9BQQ3 440 aa4.17□□□□□ -1.74
ZNF540-207ENST00000589285 TARS2Q9BW92 718 aaKnown RBP4.17□□□□□ -1.74
ZNF540-207ENST00000589285 KRTAP9-9Q9BYP9 154 aa4.17□□□□□ -1.74
ZNF540-207ENST00000589285 KRTAP9-4Q9BYQ2 154 aa4.17□□□□□ -1.74
ZNF540-207ENST00000589285 RIC8BQ9NVN3 520 aa4.17□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms