RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 FOXP1Q9H334 677 aaPredicted RBP12.23□□□□□ -0.45
CLIP3-203ENST00000586457 RNF216Q9NWF9 866 aaPredicted RBP12.23□□□□□ -0.45
CLIP3-203ENST00000586457 SMC3Q9UQE7 1217 aa12.23□□□□□ -0.45
CLIP3-203ENST00000586457 AKT3Q9Y243 479 aa12.23□□□□□ -0.45
CLIP3-203ENST00000586457 STXBP5LQ9Y2K9 1186 aa12.23□□□□□ -0.45
CLIP3-203ENST00000586457 TRPV2Q9Y5S1 764 aa12.23□□□□□ -0.45
CLIP3-203ENST00000586457 P4HBP07237 508 aaKnown RBP12.22□□□□□ -0.45
CLIP3-203ENST00000586457 MCM7P33993 719 aa12.22□□□□□ -0.45
CLIP3-203ENST00000586457 QARSP47897 775 aaKnown RBP12.22□□□□□ -0.45
CLIP3-203ENST00000586457 CDC42EP1Q00587 391 aa12.22□□□□□ -0.45
CLIP3-203ENST00000586457 NFX1Q12986 1120 aaKnown RBP12.22□□□□□ -0.45
CLIP3-203ENST00000586457 PAK2Q13177 524 aa12.22□□□□□ -0.45
CLIP3-203ENST00000586457 MBTPS1Q14703 1052 aa12.22□□□□□ -0.45
CLIP3-203ENST00000586457 MTERF2Q49AM1 385 aa12.22□□□□□ -0.45
CLIP3-203ENST00000586457 TSHZ1Q6ZSZ6 1077 aa12.22□□□□□ -0.45
CLIP3-203ENST00000586457 POTEDQ86YR6 584 aa12.22□□□□□ -0.45
CLIP3-203ENST00000586457 BANK1Q8NDB2 785 aa12.22□□□□□ -0.45
CLIP3-203ENST00000586457 ZBTB10Q96DT7 871 aa12.22□□□□□ -0.45
CLIP3-203ENST00000586457 TMX3Q96JJ7 454 aa12.22□□□□□ -0.45
CLIP3-203ENST00000586457 RAD9AQ99638 391 aa12.22□□□□□ -0.45
CLIP3-203ENST00000586457 FTHL17Q9BXU8 183 aa12.22□□□□□ -0.45
CLIP3-203ENST00000586457 INSL6Q9Y581 213 aa12.22□□□□□ -0.45
CLIP3-203ENST00000586457 SQORQ9Y6N5 450 aa12.22□□□□□ -0.45
CLIP3-203ENST00000586457 SCN5AQ14524 2016 aa12.21□□□□□ -0.45
CLIP3-203ENST00000586457 GPR182O15218 404 aa12.21□□□□□ -0.45
CLIP3-203ENST00000586457 RPS6KA5O75582 802 aa12.21□□□□□ -0.45
CLIP3-203ENST00000586457 CA3P07451 260 aa12.21□□□□□ -0.45
CLIP3-203ENST00000586457 MYOGP15173 224 aa12.21□□□□□ -0.45
CLIP3-203ENST00000586457 ATP4AP20648 1035 aa12.21□□□□□ -0.45
CLIP3-203ENST00000586457 IBSPP21815 317 aaPredicted RBP12.21□□□□□ -0.45
CLIP3-203ENST00000586457 IGFBP4P22692 258 aa12.21□□□□□ -0.45
CLIP3-203ENST00000586457 PPP2R5CQ13362 524 aa12.21□□□□□ -0.45
CLIP3-203ENST00000586457 GPNMBQ14956 572 aa12.21□□□□□ -0.45
CLIP3-203ENST00000586457 EPHA7Q15375 998 aa12.21□□□□□ -0.45
CLIP3-203ENST00000586457 TMEM266Q2M3C6 531 aa12.21□□□□□ -0.45
CLIP3-203ENST00000586457 TRAF7Q6Q0C0 670 aa12.21□□□□□ -0.45
CLIP3-203ENST00000586457 NOSTRINQ8IVI9 506 aa12.21□□□□□ -0.45
CLIP3-203ENST00000586457 TPH2Q8IWU9 490 aa12.21□□□□□ -0.45
CLIP3-203ENST00000586457 ERMNQ8TAM6 284 aa12.21□□□□□ -0.45
CLIP3-203ENST00000586457 YME1L1Q96TA2 773 aa12.21□□□□□ -0.45
CLIP3-203ENST00000586457 BACH2Q9BYV9 841 aa12.21□□□□□ -0.45
CLIP3-203ENST00000586457 TTYH1Q9H313 450 aaPredicted RBP12.21□□□□□ -0.45
CLIP3-203ENST00000586457 TTC12Q9H892 705 aaPredicted RBP12.21□□□□□ -0.45
CLIP3-203ENST00000586457 KCNMB3Q9NPA1 279 aa12.21□□□□□ -0.45
CLIP3-203ENST00000586457 LRFN2Q9ULH4 789 aa12.21□□□□□ -0.45
CLIP3-203ENST00000586457 IGSF9BQ9UPX0 1349 aa12.2□□□□□ -0.46
CLIP3-203ENST00000586457 DENND3A2RUS2 1198 aa12.2□□□□□ -0.46
CLIP3-203ENST00000586457 FAM205CA6NFA0 338 aa12.2□□□□□ -0.46
CLIP3-203ENST00000586457 EDIL3O43854 480 aa12.2□□□□□ -0.46
CLIP3-203ENST00000586457 GJB5O95377 273 aa12.2□□□□□ -0.46
CLIP3-203ENST00000586457 CD52P31358 61 aa12.2□□□□□ -0.46
CLIP3-203ENST00000586457 DEFB103AP81534 67 aa12.2□□□□□ -0.46
CLIP3-203ENST00000586457 LPIN1Q14693 890 aa12.2□□□□□ -0.46
CLIP3-203ENST00000586457 GRIN2CQ14957 1233 aa12.2□□□□□ -0.46
CLIP3-203ENST00000586457 ZNF174Q15697 407 aa12.2□□□□□ -0.46
CLIP3-203ENST00000586457 EARS2Q5JPH6 523 aaKnown RBP12.2□□□□□ -0.46
CLIP3-203ENST00000586457 FBXO47Q5MNV8 452 aa12.2□□□□□ -0.46
CLIP3-203ENST00000586457 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.2□□□□□ -0.46
CLIP3-203ENST00000586457 FAM43BQ6ZT52 329 aaPredicted RBP12.2□□□□□ -0.46
CLIP3-203ENST00000586457 KIAA0319LQ8IZA0 1049 aa12.2□□□□□ -0.46
CLIP3-203ENST00000586457 NLRP7Q8WX94 980 aa12.2□□□□□ -0.46
CLIP3-203ENST00000586457 SLC7A3Q8WY07 619 aa12.2□□□□□ -0.46
CLIP3-203ENST00000586457 MYLIPQ8WY64 445 aa12.2□□□□□ -0.46
CLIP3-203ENST00000586457 TNFRSF25Q93038 417 aa12.2□□□□□ -0.46
CLIP3-203ENST00000586457 VWCEQ96DN2 955 aa12.2□□□□□ -0.46
CLIP3-203ENST00000586457 PPP1R16BQ96T49 567 aa12.2□□□□□ -0.46
CLIP3-203ENST00000586457 PRDM12Q9H4Q4 367 aa12.2□□□□□ -0.46
CLIP3-203ENST00000586457 ZSWIM4Q9H7M6 989 aa12.2□□□□□ -0.46
CLIP3-203ENST00000586457 YBX2Q9Y2T7 364 aaKnown RBP12.2□□□□□ -0.46
CLIP3-203ENST00000586457 TANC1Q9C0D5 1861 aa12.2□□□□□ -0.46
CLIP3-203ENST00000586457 GTPBP6O43824 516 aaPredicted RBP12.19□□□□□ -0.46
CLIP3-203ENST00000586457 ZNF862O60290 1169 aa12.19□□□□□ -0.46
CLIP3-203ENST00000586457 C22orf31O95567 290 aa12.19□□□□□ -0.46
CLIP3-203ENST00000586457 VTNP04004 478 aa12.19□□□□□ -0.46
CLIP3-203ENST00000586457 STAG3L1P0CL83 205 aa12.19□□□□□ -0.46
CLIP3-203ENST00000586457 ZSCAN20P17040 1043 aaPredicted RBP12.19□□□□□ -0.46
CLIP3-203ENST00000586457 GJB2P29033 226 aa12.19□□□□□ -0.46
CLIP3-203ENST00000586457 TRAPPC10P48553 1259 aa12.19□□□□□ -0.46
CLIP3-203ENST00000586457 CLCN3P51790 818 aa12.19□□□□□ -0.46
CLIP3-203ENST00000586457 CRYBB1P53674 252 aaPredicted RBP12.19□□□□□ -0.46
CLIP3-203ENST00000586457 POLGP54098 1239 aaPredicted RBP12.19□□□□□ -0.46
CLIP3-203ENST00000586457 NLRP11P59045 1033 aaKnown RBP12.19□□□□□ -0.46
CLIP3-203ENST00000586457 CYP4A11Q02928 519 aa12.19□□□□□ -0.46
CLIP3-203ENST00000586457 MGAT3Q09327 533 aa12.19□□□□□ -0.46
CLIP3-203ENST00000586457 ST3GAL1Q11201 340 aa12.19□□□□□ -0.46
CLIP3-203ENST00000586457 ORC2Q13416 577 aaPredicted RBP12.19□□□□□ -0.46
CLIP3-203ENST00000586457 UGCGQ16739 394 aa12.19□□□□□ -0.46
CLIP3-203ENST00000586457 KIZQ2M2Z5 673 aa12.19□□□□□ -0.46
CLIP3-203ENST00000586457 TTC38Q5R3I4 469 aa12.19□□□□□ -0.46
CLIP3-203ENST00000586457 LARP1BQ659C4 914 aaKnown RBP12.19□□□□□ -0.46
CLIP3-203ENST00000586457 TMCO2Q7Z6W1 182 aaPredicted RBP12.19□□□□□ -0.46
CLIP3-203ENST00000586457 LRRC71Q8N4P6 559 aa12.19□□□□□ -0.46
CLIP3-203ENST00000586457 ARNTL2Q8WYA1 636 aa12.19□□□□□ -0.46
CLIP3-203ENST00000586457 HAS1Q92839 578 aa12.19□□□□□ -0.46
CLIP3-203ENST00000586457 CEP170P1Q96L14 293 aa12.19□□□□□ -0.46
CLIP3-203ENST00000586457 GUCD1Q96NT3 240 aa12.19□□□□□ -0.46
CLIP3-203ENST00000586457 NIFKQ9BYG3 293 aaKnown RBP12.19□□□□□ -0.46
CLIP3-203ENST00000586457 RAB34Q9BZG1 259 aa12.19□□□□□ -0.46
CLIP3-203ENST00000586457 CERS4Q9HA82 394 aa12.19□□□□□ -0.46
CLIP3-203ENST00000586457 PADI3Q9ULW8 664 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms