RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 SLC25A27O95847 323 aa15.63■□□□□ 0.09
LIG3-205ENST00000585941 YWHABP31946 246 aaKnown RBP15.63■□□□□ 0.09
LIG3-205ENST00000585941 HOXD13P35453 343 aa15.63■□□□□ 0.09
LIG3-205ENST00000585941 ODR4Q5SWX8 454 aa15.63■□□□□ 0.09
LIG3-205ENST00000585941 RAD9BQ6WBX8 426 aa15.63■□□□□ 0.09
LIG3-205ENST00000585941 HS2ST1Q7LGA3 356 aa15.63■□□□□ 0.09
LIG3-205ENST00000585941 ZNF720Q7Z2F6 126 aa15.63■□□□□ 0.09
LIG3-205ENST00000585941 ATP6V0A1Q93050 837 aa15.63■□□□□ 0.09
LIG3-205ENST00000585941 TAF1DQ9H5J8 278 aaPredicted RBP15.63■□□□□ 0.09
LIG3-205ENST00000585941 SPATA31C2B4DYI2 1134 aa15.62■□□□□ 0.09
LIG3-205ENST00000585941 RNF225M0QZC1 329 aaPredicted RBP15.62■□□□□ 0.09
LIG3-205ENST00000585941 RIOK3O14730 519 aaKnown RBP15.62■□□□□ 0.09
LIG3-205ENST00000585941 HIP1RO75146 1068 aa15.62■□□□□ 0.09
LIG3-205ENST00000585941 KCNA2P16389 499 aa15.62■□□□□ 0.09
LIG3-205ENST00000585941 ICAM3P32942 547 aa15.62■□□□□ 0.09
LIG3-205ENST00000585941 GPR162Q16538 588 aa15.62■□□□□ 0.09
LIG3-205ENST00000585941 DLK2Q6UY11 383 aa15.62■□□□□ 0.09
LIG3-205ENST00000585941 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.62■□□□□ 0.09
LIG3-205ENST00000585941 OTUD6AQ7L8S5 288 aa15.62■□□□□ 0.09
LIG3-205ENST00000585941 CNKSR2Q8WXI2 1034 aa15.62■□□□□ 0.09
LIG3-205ENST00000585941 DRC1Q96MC2 740 aa15.62■□□□□ 0.09
LIG3-205ENST00000585941 PURBQ96QR8 312 aaKnown RBP15.62■□□□□ 0.09
LIG3-205ENST00000585941 SPATC1LQ9H0A9 340 aa15.62■□□□□ 0.09
LIG3-205ENST00000585941 NUCKS1Q9H1E3 243 aaKnown RBP15.62■□□□□ 0.09
LIG3-205ENST00000585941 ARMCX3Q9UH62 379 aaPredicted RBP15.62■□□□□ 0.09
LIG3-205ENST00000585941 SFI1A8K8P3 1242 aa15.61■□□□□ 0.09
LIG3-205ENST00000585941 CCNE2O96020 404 aa15.61■□□□□ 0.09
LIG3-205ENST00000585941 NR3C1P04150 777 aa15.61■□□□□ 0.09
LIG3-205ENST00000585941 PSAPP07602 524 aa15.61■□□□□ 0.09
LIG3-205ENST00000585941 EPB41P11171 864 aaKnown RBP15.61■□□□□ 0.09
LIG3-205ENST00000585941 OSBPP22059 807 aa15.61■□□□□ 0.09
LIG3-205ENST00000585941 HNRNPH3P31942 346 aaKnown RBP15.61■□□□□ 0.09
LIG3-205ENST00000585941 ERVK-24P63145 666 aa15.61■□□□□ 0.09
LIG3-205ENST00000585941 MYBPC2Q14324 1141 aa15.61■□□□□ 0.09
LIG3-205ENST00000585941 CCDC170Q8IYT3 715 aa15.61■□□□□ 0.09
LIG3-205ENST00000585941 NEK11Q8NG66 645 aa15.61■□□□□ 0.09
LIG3-205ENST00000585941 CLMNQ96JQ2 1002 aa15.61■□□□□ 0.09
LIG3-205ENST00000585941 FIZ1Q96SL8 496 aa15.61■□□□□ 0.09
LIG3-205ENST00000585941 MPHOSPH6Q99547 160 aaKnown RBP15.61■□□□□ 0.09
LIG3-205ENST00000585941 MKNK1Q9BUB5 465 aa15.61■□□□□ 0.09
LIG3-205ENST00000585941 ASCC2Q9H1I8 757 aaPredicted RBP15.61■□□□□ 0.09
LIG3-205ENST00000585941 JPH1Q9HDC5 661 aaPredicted RBP15.61■□□□□ 0.09
LIG3-205ENST00000585941 BTBD7Q9P203 1132 aa15.61■□□□□ 0.09
LIG3-205ENST00000585941 CGNQ9P2M7 1197 aaKnown RBP15.61■□□□□ 0.09
LIG3-205ENST00000585941 ASTN1O14525 1302 aa15.61■□□□□ 0.09
LIG3-205ENST00000585941 RASSF10A6NK89 507 aa15.6■□□□□ 0.09
LIG3-205ENST00000585941 NMT1P30419 496 aaKnown RBP15.6■□□□□ 0.09
LIG3-205ENST00000585941 CYLC1P35663 651 aaPredicted RBP15.6■□□□□ 0.09
LIG3-205ENST00000585941 HERVK_113P62684 666 aa15.6■□□□□ 0.09
LIG3-205ENST00000585941 MAPK7Q13164 816 aa15.6■□□□□ 0.09
LIG3-205ENST00000585941 MTF1Q14872 753 aa15.6■□□□□ 0.09
LIG3-205ENST00000585941 TRIM65Q6PJ69 517 aa15.6■□□□□ 0.09
LIG3-205ENST00000585941 SYT10Q6XYQ8 523 aa15.6■□□□□ 0.09
LIG3-205ENST00000585941 TMEM206Q9H813 350 aa15.6■□□□□ 0.09
LIG3-205ENST00000585941 MMRN2Q9H8L6 949 aa15.6■□□□□ 0.09
LIG3-205ENST00000585941 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.6■□□□□ 0.09
LIG3-205ENST00000585941 SLC9A2Q9UBY0 812 aa15.6■□□□□ 0.09
LIG3-205ENST00000585941 EPN1Q9Y6I3 576 aaPredicted RBP15.6■□□□□ 0.09
LIG3-205ENST00000585941 POTEB2H3BUK9 544 aa15.6■□□□□ 0.09
LIG3-205ENST00000585941 RGS20O76081 388 aa15.6■□□□□ 0.09
LIG3-205ENST00000585941 PLS3P13797 630 aa15.6■□□□□ 0.09
LIG3-205ENST00000585941 SNRPFP62306 86 aaKnown RBP15.6■□□□□ 0.09
LIG3-205ENST00000585941 KRT83P78385 493 aa15.6■□□□□ 0.09
LIG3-205ENST00000585941 EAPPQ56P03 285 aaPredicted RBP15.6■□□□□ 0.09
LIG3-205ENST00000585941 LDLRAD1Q5T700 205 aa15.6■□□□□ 0.09
LIG3-205ENST00000585941 GTF3C2Q8WUA4 911 aaPredicted RBP15.6■□□□□ 0.09
LIG3-205ENST00000585941 OPTNQ96CV9 577 aa15.6■□□□□ 0.09
LIG3-205ENST00000585941 DESI2Q9BSY9 194 aa15.6■□□□□ 0.09
LIG3-205ENST00000585941 STRA6Q9BX79 667 aa15.6■□□□□ 0.09
LIG3-205ENST00000585941 GBP3Q9H0R5 595 aa15.6■□□□□ 0.09
LIG3-205ENST00000585941 ST6GALNAC4Q9H4F1 302 aa15.6■□□□□ 0.09
LIG3-205ENST00000585941 AGPAT5Q9NUQ2 364 aa15.6■□□□□ 0.09
LIG3-205ENST00000585941 PLAGL2Q9UPG8 496 aa15.6■□□□□ 0.09
LIG3-205ENST00000585941 MYH9P35579 1960 aaKnown RBP15.59■□□□□ 0.09
LIG3-205ENST00000585941 TGFB1I1O43294 461 aa15.59■□□□□ 0.09
LIG3-205ENST00000585941 PPP1R37O75864 691 aa15.59■□□□□ 0.09
LIG3-205ENST00000585941 NDUFA10O95299 355 aa15.59■□□□□ 0.09
LIG3-205ENST00000585941 IPO7O95373 1038 aaKnown RBP15.59■□□□□ 0.09
LIG3-205ENST00000585941 XRCC5P13010 732 aaKnown RBP15.59■□□□□ 0.09
LIG3-205ENST00000585941 PSMC2P35998 433 aaKnown RBP15.59■□□□□ 0.09
LIG3-205ENST00000585941 ALDH5A1P51649 535 aaPredicted RBP15.59■□□□□ 0.09
LIG3-205ENST00000585941 XKR9Q5GH70 373 aa15.59■□□□□ 0.09
LIG3-205ENST00000585941 MIS18BP1Q6P0N0 1132 aa15.59■□□□□ 0.09
LIG3-205ENST00000585941 WDR59Q6PJI9 974 aa15.59■□□□□ 0.09
LIG3-205ENST00000585941 NCAPG2Q86XI2 1143 aa15.59■□□□□ 0.09
LIG3-205ENST00000585941 SLC9A9Q8IVB4 645 aa15.59■□□□□ 0.09
LIG3-205ENST00000585941 DAW1Q8N136 415 aa15.59■□□□□ 0.09
LIG3-205ENST00000585941 TMEM174Q8WUU8 243 aa15.59■□□□□ 0.09
LIG3-205ENST00000585941 C17orf75Q9HAS0 396 aa15.59■□□□□ 0.09
LIG3-205ENST00000585941 FAM207AQ9NSI2 230 aaPredicted RBP15.59■□□□□ 0.09
LIG3-205ENST00000585941 CEP72Q9P209 647 aa15.59■□□□□ 0.09
LIG3-205ENST00000585941 ZMYM2Q9UBW7 1377 aa15.58■□□□□ 0.09
LIG3-205ENST00000585941 NKRFO15226 690 aaKnown RBP eCLIP15.58■□□□□ 0.08
LIG3-205ENST00000585941 KIF5CO60282 957 aa15.58■□□□□ 0.08
LIG3-205ENST00000585941 USO1O60763 962 aaKnown RBP15.58■□□□□ 0.08
LIG3-205ENST00000585941 AFPP02771 609 aaKnown RBP15.58■□□□□ 0.08
LIG3-205ENST00000585941 EDNRBP24530 442 aa15.58■□□□□ 0.08
LIG3-205ENST00000585941 KLK7P49862 253 aa15.58■□□□□ 0.08
LIG3-205ENST00000585941 KCNH2Q12809 1159 aa15.58■□□□□ 0.08
LIG3-205ENST00000585941 SNAPC2Q13487 334 aa15.58■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 108.9 ms