RNA–Protein interactions for RNA: ENST00000585740.5

LIG3-204, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-204ENST00000585740 ARMCX3Q9UH62 379 aaPredicted RBP12.4□□□□□ -0.42
LIG3-204ENST00000585740 PLAGL2Q9UPG8 496 aa12.4□□□□□ -0.42
LIG3-204ENST00000585740 PAPPA2Q9BXP8 1791 aa12.39□□□□□ -0.43
LIG3-204ENST00000585740 WDR64B1ANS9 1081 aa12.39□□□□□ -0.43
LIG3-204ENST00000585740 RSPH10B2B2RC85 870 aa12.39□□□□□ -0.43
LIG3-204ENST00000585740 RRP9O43818 475 aaKnown RBP12.39□□□□□ -0.43
LIG3-204ENST00000585740 PPP1R12BO60237 982 aaPredicted RBP12.39□□□□□ -0.43
LIG3-204ENST00000585740 PRPF6O94906 941 aaKnown RBP12.39□□□□□ -0.43
LIG3-204ENST00000585740 NR3C1P04150 777 aa12.39□□□□□ -0.43
LIG3-204ENST00000585740 RSPH10BP0C881 870 aa12.39□□□□□ -0.43
LIG3-204ENST00000585740 MYCLP12524 364 aaPredicted RBP12.39□□□□□ -0.43
LIG3-204ENST00000585740 EPHX2P34913 555 aa12.39□□□□□ -0.43
LIG3-204ENST00000585740 HIRAP54198 1017 aaPredicted RBP12.39□□□□□ -0.43
LIG3-204ENST00000585740 BAATQ14032 418 aaPredicted RBP12.39□□□□□ -0.43
LIG3-204ENST00000585740 ZNF746Q6NUN9 644 aaPredicted RBP12.39□□□□□ -0.43
LIG3-204ENST00000585740 WDR59Q6PJI9 974 aa12.39□□□□□ -0.43
LIG3-204ENST00000585740 HS2ST1Q7LGA3 356 aa12.39□□□□□ -0.43
LIG3-204ENST00000585740 CACNA2D4Q7Z3S7 1137 aa12.39□□□□□ -0.43
LIG3-204ENST00000585740 VSIG10LQ86VR7 867 aa12.39□□□□□ -0.43
LIG3-204ENST00000585740 C4orf19Q8IY42 314 aa12.39□□□□□ -0.43
LIG3-204ENST00000585740 MNS1Q8NEH6 495 aa12.39□□□□□ -0.43
LIG3-204ENST00000585740 CHST13Q8NET6 341 aa12.39□□□□□ -0.43
LIG3-204ENST00000585740 NSUN6Q8TEA1 469 aaKnown RBP12.39□□□□□ -0.43
LIG3-204ENST00000585740 DCPSQ96C86 337 aaKnown RBP12.39□□□□□ -0.43
LIG3-204ENST00000585740 CCDC43Q96MW1 224 aaKnown RBP12.39□□□□□ -0.43
LIG3-204ENST00000585740 CHP1Q99653 195 aa12.39□□□□□ -0.43
LIG3-204ENST00000585740 SENP7Q9BQF6 1050 aa12.39□□□□□ -0.43
LIG3-204ENST00000585740 TSGA10Q9BZW7 698 aa12.39□□□□□ -0.43
LIG3-204ENST00000585740 NHEJ1Q9H9Q4 299 aaPredicted RBP12.39□□□□□ -0.43
LIG3-204ENST00000585740 LZTFL1Q9NQ48 299 aa12.39□□□□□ -0.43
LIG3-204ENST00000585740 ANKEF1Q9NU02 776 aa12.39□□□□□ -0.43
LIG3-204ENST00000585740 AGPAT5Q9NUQ2 364 aa12.39□□□□□ -0.43
LIG3-204ENST00000585740 CGNQ9P2M7 1197 aaKnown RBP12.39□□□□□ -0.43
LIG3-204ENST00000585740 ZNF215Q9UL58 517 aaPredicted RBP12.39□□□□□ -0.43
LIG3-204ENST00000585740 ZNF214Q9UL59 606 aaPredicted RBP12.39□□□□□ -0.43
LIG3-204ENST00000585740 CSADQ9Y600 493 aa12.39□□□□□ -0.43
LIG3-204ENST00000585740 DDX39AO00148 427 aaKnown RBP12.38□□□□□ -0.43
LIG3-204ENST00000585740 KRT86O43790 486 aa12.38□□□□□ -0.43
LIG3-204ENST00000585740 USP2O75604 605 aaPredicted RBP12.38□□□□□ -0.43
LIG3-204ENST00000585740 AFPP02771 609 aaKnown RBP12.38□□□□□ -0.43
LIG3-204ENST00000585740 NR3C2P08235 984 aa12.38□□□□□ -0.43
LIG3-204ENST00000585740 IREB2P48200 963 aaKnown RBP12.38□□□□□ -0.43
LIG3-204ENST00000585740 KLK7P49862 253 aa12.38□□□□□ -0.43
LIG3-204ENST00000585740 CASP5P51878 434 aa12.38□□□□□ -0.43
LIG3-204ENST00000585740 PSMC5P62195 406 aa12.38□□□□□ -0.43
LIG3-204ENST00000585740 SNRPFP62306 86 aaKnown RBP12.38□□□□□ -0.43
LIG3-204ENST00000585740 TUBB4BP68371 445 aa12.38□□□□□ -0.43
LIG3-204ENST00000585740 NCBP1Q09161 790 aaKnown RBP12.38□□□□□ -0.43
LIG3-204ENST00000585740 ITGB3BPQ13352 177 aaPredicted RBP12.38□□□□□ -0.43
LIG3-204ENST00000585740 DGKZQ13574 1117 aa12.38□□□□□ -0.43
LIG3-204ENST00000585740 SPA17Q15506 151 aa12.38□□□□□ -0.43
LIG3-204ENST00000585740 PRAMEF18Q5VWM3 479 aa12.38□□□□□ -0.43
LIG3-204ENST00000585740 PDXDC1Q6P996 788 aa12.38□□□□□ -0.43
LIG3-204ENST00000585740 PADI6Q6TGC4 694 aa12.38□□□□□ -0.43
LIG3-204ENST00000585740 ZNF720Q7Z2F6 126 aa12.38□□□□□ -0.43
LIG3-204ENST00000585740 KIAA1328Q86T90 577 aa12.38□□□□□ -0.43
LIG3-204ENST00000585740 SULF1Q8IWU6 871 aa12.38□□□□□ -0.43
LIG3-204ENST00000585740 BANK1Q8NDB2 785 aa12.38□□□□□ -0.43
LIG3-204ENST00000585740 CCDC42Q96M95 316 aa12.38□□□□□ -0.43
LIG3-204ENST00000585740 BEGAINQ9BUH8 593 aa12.38□□□□□ -0.43
LIG3-204ENST00000585740 LSM14BQ9BX40 385 aaKnown RBP12.38□□□□□ -0.43
LIG3-204ENST00000585740 PLCB1Q9NQ66 1216 aa12.38□□□□□ -0.43
LIG3-204ENST00000585740 LARSQ9P2J5 1176 aaKnown RBP12.38□□□□□ -0.43
LIG3-204ENST00000585740 FBXO40Q9UH90 709 aa12.38□□□□□ -0.43
LIG3-204ENST00000585740 DAAM1Q9Y4D1 1078 aa12.38□□□□□ -0.43
LIG3-204ENST00000585740 SAMM50Q9Y512 469 aa12.38□□□□□ -0.43
LIG3-204ENST00000585740 OTOFQ9HC10 1997 aa12.38□□□□□ -0.43
LIG3-204ENST00000585740 ASTN1O14525 1302 aa12.37□□□□□ -0.43
LIG3-204ENST00000585740 NFASCO94856 1347 aa12.37□□□□□ -0.43
LIG3-204ENST00000585740 A0A0G2JMZ2 1700 aa12.37□□□□□ -0.43
LIG3-204ENST00000585740 SCN4AP35499 1836 aa12.37□□□□□ -0.43
LIG3-204ENST00000585740 SSU72P8A0A1W2PR75 194 aa12.37□□□□□ -0.43
LIG3-204ENST00000585740 GTPBP10A4D1E9 387 aaKnown RBP12.37□□□□□ -0.43
LIG3-204ENST00000585740 CTAGE9A4FU28 777 aa12.37□□□□□ -0.43
LIG3-204ENST00000585740 USO1O60763 962 aaKnown RBP12.37□□□□□ -0.43
LIG3-204ENST00000585740 XRCC5P13010 732 aaKnown RBP12.37□□□□□ -0.43
LIG3-204ENST00000585740 NF2P35240 595 aa12.37□□□□□ -0.43
LIG3-204ENST00000585740 HOXD13P35453 343 aa12.37□□□□□ -0.43
LIG3-204ENST00000585740 ARHGAP25P42331 645 aa12.37□□□□□ -0.43
LIG3-204ENST00000585740 KCNMA1Q12791 1236 aa12.37□□□□□ -0.43
LIG3-204ENST00000585740 KCNH2Q12809 1159 aa12.37□□□□□ -0.43
LIG3-204ENST00000585740 GRM1Q13255 1194 aa12.37□□□□□ -0.43
LIG3-204ENST00000585740 TMEM132BQ14DG7 1078 aa12.37□□□□□ -0.43
LIG3-204ENST00000585740 GNPTABQ3T906 1256 aa12.37□□□□□ -0.43
LIG3-204ENST00000585740 ZNF569Q5MCW4 686 aa12.37□□□□□ -0.43
LIG3-204ENST00000585740 ODR4Q5SWX8 454 aa12.37□□□□□ -0.43
LIG3-204ENST00000585740 PAXIP1Q6ZW49 1069 aaPredicted RBP12.37□□□□□ -0.43
LIG3-204ENST00000585740 PNMA8AQ86V59 439 aaPredicted RBP12.37□□□□□ -0.43
LIG3-204ENST00000585740 SLC9A9Q8IVB4 645 aa12.37□□□□□ -0.43
LIG3-204ENST00000585740 SMAP1Q8IYB5 467 aaPredicted RBP12.37□□□□□ -0.43
LIG3-204ENST00000585740 DRC1Q96MC2 740 aa12.37□□□□□ -0.43
LIG3-204ENST00000585740 WDR24Q96S15 920 aa12.37□□□□□ -0.43
LIG3-204ENST00000585740 IWS1Q96ST2 819 aa12.37□□□□□ -0.43
LIG3-204ENST00000585740 NAPGQ99747 312 aaPredicted RBP12.37□□□□□ -0.43
LIG3-204ENST00000585740 PDCL3Q9H2J4 239 aa12.37□□□□□ -0.43
LIG3-204ENST00000585740 TMEM206Q9H813 350 aa12.37□□□□□ -0.43
LIG3-204ENST00000585740 LUC7LQ9NQ29 371 aaKnown RBP12.37□□□□□ -0.43
LIG3-204ENST00000585740 FAM207AQ9NSI2 230 aaPredicted RBP12.37□□□□□ -0.43
LIG3-204ENST00000585740 MYO6Q9UM54 1294 aa12.37□□□□□ -0.43
LIG3-204ENST00000585740 MRFAP1Q9Y605 127 aa12.37□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms