RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 RAD9AQ99638 391 aa17.13■□□□□ 0.33
CLIP3-202ENST00000585466 TRPV2Q9Y5S1 764 aa17.13■□□□□ 0.33
CLIP3-202ENST00000585466 CCDC194A0A1B0GVG4 234 aa17.12■□□□□ 0.33
CLIP3-202ENST00000585466 LINC01553A4QN01 128 aa17.12■□□□□ 0.33
CLIP3-202ENST00000585466 RFXAPO00287 272 aa17.12■□□□□ 0.33
CLIP3-202ENST00000585466 EML1O00423 815 aa17.12■□□□□ 0.33
CLIP3-202ENST00000585466 CHMP2AO43633 222 aa17.12■□□□□ 0.33
CLIP3-202ENST00000585466 LPXNO60711 386 aa17.12■□□□□ 0.33
CLIP3-202ENST00000585466 MMP1P03956 469 aa17.12■□□□□ 0.33
CLIP3-202ENST00000585466 SFNP31947 248 aa17.12■□□□□ 0.33
CLIP3-202ENST00000585466 JAK3P52333 1124 aa17.12■□□□□ 0.33
CLIP3-202ENST00000585466 PRKCEQ02156 737 aa17.12■□□□□ 0.33
CLIP3-202ENST00000585466 KRT40Q6A162 431 aa17.12■□□□□ 0.33
CLIP3-202ENST00000585466 FAM117BQ6P1L5 589 aa17.12■□□□□ 0.33
CLIP3-202ENST00000585466 MYOCDQ8IZQ8 938 aa17.12■□□□□ 0.33
CLIP3-202ENST00000585466 CRIPAKQ8N1N5 446 aa17.12■□□□□ 0.33
CLIP3-202ENST00000585466 TMEM40Q8WWA1 233 aa17.12■□□□□ 0.33
CLIP3-202ENST00000585466 CELF4Q9BZC1 486 aaKnown RBP17.12■□□□□ 0.33
CLIP3-202ENST00000585466 CERS4Q9HA82 394 aa17.12■□□□□ 0.33
CLIP3-202ENST00000585466 CDHR5Q9HBB8 845 aa17.12■□□□□ 0.33
CLIP3-202ENST00000585466 RC3H2Q9HBD1 1191 aaKnown RBP17.12■□□□□ 0.33
CLIP3-202ENST00000585466 SQORQ9Y6N5 450 aa17.12■□□□□ 0.33
CLIP3-202ENST00000585466 NLRC5Q86WI3 1866 aa17.12■□□□□ 0.33
CLIP3-202ENST00000585466 VCANP13611 3396 aa17.11■□□□□ 0.33
CLIP3-202ENST00000585466 CUL9Q8IWT3 2517 aa17.11■□□□□ 0.33
CLIP3-202ENST00000585466 BTBD18B2RXH4 712 aa17.11■□□□□ 0.33
CLIP3-202ENST00000585466 KIF28PB7ZC32 967 aa17.11■□□□□ 0.33
CLIP3-202ENST00000585466 AMHP03971 560 aa17.11■□□□□ 0.33
CLIP3-202ENST00000585466 OATP04181 439 aa17.11■□□□□ 0.33
CLIP3-202ENST00000585466 GCFC2P16383 781 aaKnown RBP17.11■□□□□ 0.33
CLIP3-202ENST00000585466 POU3F3P20264 500 aaPredicted RBP17.11■□□□□ 0.33
CLIP3-202ENST00000585466 CD52P31358 61 aa17.11■□□□□ 0.33
CLIP3-202ENST00000585466 KRT2P35908 639 aa17.11■□□□□ 0.33
CLIP3-202ENST00000585466 SPIRE1Q08AE8 756 aa17.11■□□□□ 0.33
CLIP3-202ENST00000585466 PPP2R5CQ13362 524 aa17.11■□□□□ 0.33
CLIP3-202ENST00000585466 TARBP2Q15633 366 aaKnown RBP17.11■□□□□ 0.33
CLIP3-202ENST00000585466 IER5Q5VY09 327 aa17.11■□□□□ 0.33
CLIP3-202ENST00000585466 RTN4RL1Q86UN2 441 aaPredicted RBP17.11■□□□□ 0.33
CLIP3-202ENST00000585466 POTEDQ86YR6 584 aa17.11■□□□□ 0.33
CLIP3-202ENST00000585466 CCDC83Q8IWF9 413 aa17.11■□□□□ 0.33
CLIP3-202ENST00000585466 NME8Q8N427 588 aa17.11■□□□□ 0.33
CLIP3-202ENST00000585466 FAM167AQ96KS9 214 aa17.11■□□□□ 0.33
CLIP3-202ENST00000585466 GAS2L1Q99501 681 aaPredicted RBP17.11■□□□□ 0.33
CLIP3-202ENST00000585466 SAMM50Q9Y512 469 aa17.11■□□□□ 0.33
CLIP3-202ENST00000585466 ENPP3O14638 875 aa17.1■□□□□ 0.33
CLIP3-202ENST00000585466 FOSBP53539 338 aa17.1■□□□□ 0.33
CLIP3-202ENST00000585466 MIER3Q7Z3K6 550 aa17.1■□□□□ 0.33
CLIP3-202ENST00000585466 CKAP2LQ8IYA6 745 aa17.1■□□□□ 0.33
CLIP3-202ENST00000585466 FAM20AQ96MK3 541 aa17.1■□□□□ 0.33
CLIP3-202ENST00000585466 LLPHQ9BRT6 129 aaKnown RBP17.1■□□□□ 0.33
CLIP3-202ENST00000585466 ZBED2Q9BTP6 218 aa17.1■□□□□ 0.33
CLIP3-202ENST00000585466 TMX1Q9H3N1 280 aa17.1■□□□□ 0.33
CLIP3-202ENST00000585466 RALGAPA2Q2PPJ7 1873 aa17.1■□□□□ 0.33
CLIP3-202ENST00000585466 ATG2AQ2TAZ0 1938 aa17.09■□□□□ 0.33
CLIP3-202ENST00000585466 TMEM150BA6NC51 233 aa17.09■□□□□ 0.33
CLIP3-202ENST00000585466 TBX3O15119 743 aa17.09■□□□□ 0.33
CLIP3-202ENST00000585466 CCNT1O60563 726 aaKnown RBP17.09■□□□□ 0.33
CLIP3-202ENST00000585466 GPR32O75388 356 aa17.09■□□□□ 0.33
CLIP3-202ENST00000585466 LINC00271P0C7V0 271 aa17.09■□□□□ 0.33
CLIP3-202ENST00000585466 CLCN3P51790 818 aa17.09■□□□□ 0.33
CLIP3-202ENST00000585466 ERVK-21P61565 698 aa17.09■□□□□ 0.33
CLIP3-202ENST00000585466 TRMT1LQ7Z2T5 733 aaKnown RBP17.09■□□□□ 0.33
CLIP3-202ENST00000585466 DIS3L2Q8IYB7 885 aaKnown RBP17.09■□□□□ 0.33
CLIP3-202ENST00000585466 ARNTL2Q8WYA1 636 aa17.09■□□□□ 0.33
CLIP3-202ENST00000585466 WRAP73Q9P2S5 460 aaPredicted RBP17.09■□□□□ 0.33
CLIP3-202ENST00000585466 TCEAL9Q9UHQ7 104 aa17.09■□□□□ 0.33
CLIP3-202ENST00000585466 PADI3Q9ULW8 664 aa17.09■□□□□ 0.33
CLIP3-202ENST00000585466 INSL6Q9Y581 213 aa17.09■□□□□ 0.33
CLIP3-202ENST00000585466 ARID2Q68CP9 1835 aa17.09■□□□□ 0.33
CLIP3-202ENST00000585466 BRWD1Q9NSI6 2320 aa17.09■□□□□ 0.33
CLIP3-202ENST00000585466 KIAA1671Q9BY89 1806 aa17.08■□□□□ 0.33
CLIP3-202ENST00000585466 CD2BP2O95400 341 aaKnown RBP17.08■□□□□ 0.32
CLIP3-202ENST00000585466 GRB10Q13322 594 aa17.08■□□□□ 0.32
CLIP3-202ENST00000585466 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.08■□□□□ 0.32
CLIP3-202ENST00000585466 NIFKQ9BYG3 293 aaKnown RBP17.08■□□□□ 0.32
CLIP3-202ENST00000585466 TSPYL2Q9H2G4 693 aaPredicted RBP17.08■□□□□ 0.32
CLIP3-202ENST00000585466 ERVK-5Q9HDB9 667 aa17.08■□□□□ 0.32
CLIP3-202ENST00000585466 PRDM6Q9NQX0 595 aa17.08■□□□□ 0.32
CLIP3-202ENST00000585466 NOC2LQ9Y3T9 749 aaKnown RBP17.08■□□□□ 0.32
CLIP3-202ENST00000585466 MTCH2Q9Y6C9 303 aa17.08■□□□□ 0.32
CLIP3-202ENST00000585466 IGKV6-21A0A0C4DH24 114 aa17.07■□□□□ 0.32
CLIP3-202ENST00000585466 DLL1O00548 723 aa17.07■□□□□ 0.32
CLIP3-202ENST00000585466 MGEA5O60502 916 aa17.07■□□□□ 0.32
CLIP3-202ENST00000585466 VTNP04004 478 aa17.07■□□□□ 0.32
CLIP3-202ENST00000585466 DRP2Q13474 957 aa17.07■□□□□ 0.32
CLIP3-202ENST00000585466 KIZQ2M2Z5 673 aa17.07■□□□□ 0.32
CLIP3-202ENST00000585466 TMEM266Q2M3C6 531 aa17.07■□□□□ 0.32
CLIP3-202ENST00000585466 ANO5Q75V66 913 aa17.07■□□□□ 0.32
CLIP3-202ENST00000585466 LRRC71Q8N4P6 559 aa17.07■□□□□ 0.32
CLIP3-202ENST00000585466 BANK1Q8NDB2 785 aa17.07■□□□□ 0.32
CLIP3-202ENST00000585466 ZSCAN31Q96LW9 406 aaPredicted RBP17.07■□□□□ 0.32
CLIP3-202ENST00000585466 ADAMTS10Q9H324 1103 aa17.07■□□□□ 0.32
CLIP3-202ENST00000585466 SUGCTQ9HAC7 445 aa17.07■□□□□ 0.32
CLIP3-202ENST00000585466 SH2B1Q9NRF2 756 aaPredicted RBP17.07■□□□□ 0.32
CLIP3-202ENST00000585466 CEP131Q9UPN4 1083 aa17.07■□□□□ 0.32
CLIP3-202ENST00000585466 TTC28Q96AY4 2481 aa17.06■□□□□ 0.32
CLIP3-202ENST00000585466 M0QZ92 97 aa17.06■□□□□ 0.32
CLIP3-202ENST00000585466 MAGEB2O15479 319 aa17.06■□□□□ 0.32
CLIP3-202ENST00000585466 UPP2O95045 317 aa17.06■□□□□ 0.32
CLIP3-202ENST00000585466 IGFBP4P22692 258 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms