RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 GAS2O43903 313 aaKnown RBP16.96■□□□□ 0.31
SS18-215ENST00000580642 MSCO60682 206 aa16.96■□□□□ 0.31
SS18-215ENST00000580642 TBCAO75347 108 aaKnown RBP16.96■□□□□ 0.31
SS18-215ENST00000580642 MAPTP10636 758 aaKnown RBP16.96■□□□□ 0.31
SS18-215ENST00000580642 ABCD1P33897 745 aa16.96■□□□□ 0.31
SS18-215ENST00000580642 ZNF131P52739 623 aa16.96■□□□□ 0.31
SS18-215ENST00000580642 RTP1P59025 263 aa16.96■□□□□ 0.31
SS18-215ENST00000580642 STIM1Q13586 685 aa16.96■□□□□ 0.31
SS18-215ENST00000580642 DHX8Q14562 1220 aaKnown RBP16.96■□□□□ 0.31
SS18-215ENST00000580642 XKR9Q5GH70 373 aa16.96■□□□□ 0.31
SS18-215ENST00000580642 FOXR2Q6PJQ5 311 aa16.96■□□□□ 0.31
SS18-215ENST00000580642 TLK2Q86UE8 772 aa16.96■□□□□ 0.31
SS18-215ENST00000580642 AFG1LQ8WV93 481 aa16.96■□□□□ 0.31
SS18-215ENST00000580642 ERCC4Q92889 916 aaPredicted RBP16.96■□□□□ 0.31
SS18-215ENST00000580642 COPS5Q92905 334 aa16.96■□□□□ 0.31
SS18-215ENST00000580642 CEP170P1Q96L14 293 aa16.96■□□□□ 0.31
SS18-215ENST00000580642 DRC1Q96MC2 740 aa16.96■□□□□ 0.31
SS18-215ENST00000580642 SPC25Q9HBM1 224 aa16.96■□□□□ 0.31
SS18-215ENST00000580642 CYP26B1Q9NR63 512 aa16.96■□□□□ 0.31
SS18-215ENST00000580642 OLFML3Q9NRN5 406 aa16.96■□□□□ 0.31
SS18-215ENST00000580642 PANK4Q9NVE7 773 aa16.96■□□□□ 0.31
SS18-215ENST00000580642 MCM3APO60318 1980 aa16.96■□□□□ 0.31
SS18-215ENST00000580642 COL1A2P08123 1366 aa16.95■□□□□ 0.3
SS18-215ENST00000580642 GOLGA6L3A6NEY3 463 aa16.95■□□□□ 0.3
SS18-215ENST00000580642 DYNC1LI2O43237 492 aaPredicted RBP16.95■□□□□ 0.3
SS18-215ENST00000580642 HBP1O60381 514 aa16.95■□□□□ 0.3
SS18-215ENST00000580642 ECM2O94769 699 aaPredicted RBP16.95■□□□□ 0.3
SS18-215ENST00000580642 LGALS2P05162 132 aa16.95■□□□□ 0.3
SS18-215ENST00000580642 MMP3P08254 477 aa16.95■□□□□ 0.3
SS18-215ENST00000580642 ATP4AP20648 1035 aa16.95■□□□□ 0.3
SS18-215ENST00000580642 ZNF165P49910 485 aa16.95■□□□□ 0.3
SS18-215ENST00000580642 GJA9P57773 515 aa16.95■□□□□ 0.3
SS18-215ENST00000580642 TARBP2Q15633 366 aaKnown RBP16.95■□□□□ 0.3
SS18-215ENST00000580642 ANO6Q4KMQ2 910 aa16.95■□□□□ 0.3
SS18-215ENST00000580642 PRAMEF19Q5SWL8 479 aa16.95■□□□□ 0.3
SS18-215ENST00000580642 DYMQ7RTS9 669 aa16.95■□□□□ 0.3
SS18-215ENST00000580642 KIFAP3Q92845 792 aa16.95■□□□□ 0.3
SS18-215ENST00000580642 REEP2Q9BRK0 252 aa16.95■□□□□ 0.3
SS18-215ENST00000580642 RUSC1Q9BVN2 902 aa16.95■□□□□ 0.3
SS18-215ENST00000580642 UPF3AQ9H1J1 476 aaKnown RBP16.95■□□□□ 0.3
SS18-215ENST00000580642 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.94■□□□□ 0.3
SS18-215ENST00000580642 SMTNL1A8MU46 457 aa16.94■□□□□ 0.3
SS18-215ENST00000580642 BIN1O00499 593 aa16.94■□□□□ 0.3
SS18-215ENST00000580642 IKBKBO14920 756 aa16.94■□□□□ 0.3
SS18-215ENST00000580642 ZEB2O60315 1214 aa16.94■□□□□ 0.3
SS18-215ENST00000580642 RARBP10826 455 aa16.94■□□□□ 0.3
SS18-215ENST00000580642 IDEP14735 1019 aa16.94■□□□□ 0.3
SS18-215ENST00000580642 BMP6P22004 513 aa16.94■□□□□ 0.3
SS18-215ENST00000580642 CASP1P29466 404 aa16.94■□□□□ 0.3
SS18-215ENST00000580642 CAP1Q01518 475 aa16.94■□□□□ 0.3
SS18-215ENST00000580642 CACNB2Q08289 660 aaPredicted RBP16.94■□□□□ 0.3
SS18-215ENST00000580642 ALCAMQ13740 583 aa16.94■□□□□ 0.3
SS18-215ENST00000580642 UVSSAQ2YD98 709 aa16.94■□□□□ 0.3
SS18-215ENST00000580642 DPCR1Q3MIW9 517 aa16.94■□□□□ 0.3
SS18-215ENST00000580642 ZNF484Q5JVG2 852 aa16.94■□□□□ 0.3
SS18-215ENST00000580642 KCNN1Q92952 543 aa16.94■□□□□ 0.3
SS18-215ENST00000580642 DHTKD1Q96HY7 919 aaPredicted RBP16.94■□□□□ 0.3
SS18-215ENST00000580642 PARVGQ9HBI0 331 aa16.94■□□□□ 0.3
SS18-215ENST00000580642 PDLIM7Q9NR12 457 aa16.94■□□□□ 0.3
SS18-215ENST00000580642 LARSQ9P2J5 1176 aaKnown RBP16.94■□□□□ 0.3
SS18-215ENST00000580642 SEPT9Q9UHD8 586 aaPredicted RBP16.94■□□□□ 0.3
SS18-215ENST00000580642 TELO2Q9Y4R8 837 aa16.94■□□□□ 0.3
SS18-215ENST00000580642 ZBTB39O15060 712 aa16.93■□□□□ 0.3
SS18-215ENST00000580642 SORBS3O60504 671 aa16.93■□□□□ 0.3
SS18-215ENST00000580642 FAM13AO94988 1023 aa16.93■□□□□ 0.3
SS18-215ENST00000580642 PRKAR2AP13861 404 aaKnown RBP16.93■□□□□ 0.3
SS18-215ENST00000580642 COASYQ13057 564 aa16.93■□□□□ 0.3
SS18-215ENST00000580642 HERC4Q5GLZ8 1057 aaPredicted RBP16.93■□□□□ 0.3
SS18-215ENST00000580642 FAM26FQ5R3K3 315 aa16.93■□□□□ 0.3
SS18-215ENST00000580642 TMEM63BQ5T3F8 832 aa16.93■□□□□ 0.3
SS18-215ENST00000580642 STXBP4Q6ZWJ1 553 aa16.93■□□□□ 0.3
SS18-215ENST00000580642 GAS2L3Q86XJ1 694 aa16.93■□□□□ 0.3
SS18-215ENST00000580642 GUF1Q8N442 669 aaKnown RBP16.93■□□□□ 0.3
SS18-215ENST00000580642 TRPV1Q8NER1 839 aa16.93■□□□□ 0.3
SS18-215ENST00000580642 SLC7A3Q8WY07 619 aa16.93■□□□□ 0.3
SS18-215ENST00000580642 C16orf70Q9BSU1 422 aa16.93■□□□□ 0.3
SS18-215ENST00000580642 KATNAL1Q9BW62 490 aa16.93■□□□□ 0.3
SS18-215ENST00000580642 DNAJC25Q9H1X3 360 aa16.93■□□□□ 0.3
SS18-215ENST00000580642 DHX33Q9H6R0 707 aaKnown RBP16.93■□□□□ 0.3
SS18-215ENST00000580642 ATP6V0A4Q9HBG4 840 aa16.93■□□□□ 0.3
SS18-215ENST00000580642 H0YCG3 227 aa16.92■□□□□ 0.3
SS18-215ENST00000580642 H3BRB1 525 aa16.92■□□□□ 0.3
SS18-215ENST00000580642 PSMA7O14818 248 aa16.92■□□□□ 0.3
SS18-215ENST00000580642 MAGEB2O15479 319 aa16.92■□□□□ 0.3
SS18-215ENST00000580642 ADCY6O43306 1168 aa16.92■□□□□ 0.3
SS18-215ENST00000580642 F2P00734 622 aa16.92■□□□□ 0.3
SS18-215ENST00000580642 MRE11P49959 708 aa16.92■□□□□ 0.3
SS18-215ENST00000580642 PLCB4Q15147 1175 aa16.92■□□□□ 0.3
SS18-215ENST00000580642 UTP14CQ5TAP6 766 aaKnown RBP16.92■□□□□ 0.3
SS18-215ENST00000580642 ADSSL1Q8N142 457 aa16.92■□□□□ 0.3
SS18-215ENST00000580642 ENOX1Q8TC92 643 aaKnown RBP16.92■□□□□ 0.3
SS18-215ENST00000580642 CEP89Q96ST8 783 aa16.92■□□□□ 0.3
SS18-215ENST00000580642 ST6GALNAC4Q9H4F1 302 aa16.92■□□□□ 0.3
SS18-215ENST00000580642 TUT1Q9H6E5 874 aaKnown RBP16.92■□□□□ 0.3
SS18-215ENST00000580642 UBE4BO95155 1302 aa16.92■□□□□ 0.3
SS18-215ENST00000580642 A0A087WWV3 80 aa16.91■□□□□ 0.3
SS18-215ENST00000580642 RRN3P2A6NIE6 340 aa16.91■□□□□ 0.3
SS18-215ENST00000580642 PPP1R3GB7ZBB8 358 aa16.91■□□□□ 0.3
SS18-215ENST00000580642 MAFO75444 373 aaPredicted RBP16.91■□□□□ 0.3
SS18-215ENST00000580642 PLS3P13797 630 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms