RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 B3GNT9Q6UX72 402 aa11.05□□□□□ -0.64
VPS53-220ENST00000576149 CCNI2Q6ZMN8 369 aaPredicted RBP11.05□□□□□ -0.64
VPS53-220ENST00000576149 MYCT1Q8N699 235 aa11.05□□□□□ -0.64
VPS53-220ENST00000576149 MTMR14Q8NCE2 650 aa11.05□□□□□ -0.64
VPS53-220ENST00000576149 SLC35C1Q96A29 364 aa11.05□□□□□ -0.64
VPS53-220ENST00000576149 BORCS6Q96GS4 357 aa11.05□□□□□ -0.64
VPS53-220ENST00000576149 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.05□□□□□ -0.64
VPS53-220ENST00000576149 WDR11Q9BZH6 1224 aa11.05□□□□□ -0.64
VPS53-220ENST00000576149 DEFB129Q9H1M3 183 aa11.05□□□□□ -0.64
VPS53-220ENST00000576149 PARVGQ9HBI0 331 aa11.05□□□□□ -0.64
VPS53-220ENST00000576149 VEZTQ9HBM0 779 aa11.05□□□□□ -0.64
VPS53-220ENST00000576149 FEM1BQ9UK73 627 aa11.05□□□□□ -0.64
VPS53-220ENST00000576149 FBXL5Q9UKA1 691 aa11.05□□□□□ -0.64
VPS53-220ENST00000576149 ZMYM2Q9UBW7 1377 aa11.05□□□□□ -0.64
VPS53-220ENST00000576149 CLIC2O15247 247 aa11.05□□□□□ -0.64
VPS53-220ENST00000576149 ZMYND10O75800 440 aa11.05□□□□□ -0.64
VPS53-220ENST00000576149 ARP10275 920 aa11.05□□□□□ -0.64
VPS53-220ENST00000576149 KLRC1P26715 233 aa11.05□□□□□ -0.64
VPS53-220ENST00000576149 NMT1P30419 496 aaKnown RBP11.05□□□□□ -0.64
VPS53-220ENST00000576149 CXCR5P32302 372 aa11.05□□□□□ -0.64
VPS53-220ENST00000576149 NAP1L1P55209 391 aaKnown RBP11.05□□□□□ -0.64
VPS53-220ENST00000576149 ZYXQ15942 572 aaKnown RBP11.05□□□□□ -0.64
VPS53-220ENST00000576149 DCAF17Q5H9S7 520 aaPredicted RBP11.05□□□□□ -0.64
VPS53-220ENST00000576149 MIGA2Q7L4E1 593 aa11.05□□□□□ -0.64
VPS53-220ENST00000576149 FAM83AQ86UY5 434 aa11.05□□□□□ -0.64
VPS53-220ENST00000576149 LDHDQ86WU2 507 aa11.05□□□□□ -0.64
VPS53-220ENST00000576149 RUBCNQ92622 972 aa11.05□□□□□ -0.64
VPS53-220ENST00000576149 SGSM3Q96HU1 749 aa11.05□□□□□ -0.64
VPS53-220ENST00000576149 NACC1Q96RE7 527 aa11.05□□□□□ -0.64
VPS53-220ENST00000576149 ZNF577Q9BSK1 485 aa11.05□□□□□ -0.64
VPS53-220ENST00000576149 ACBD3Q9H3P7 528 aa11.05□□□□□ -0.64
VPS53-220ENST00000576149 ZNF277Q9NRM2 450 aaPredicted RBP11.05□□□□□ -0.64
VPS53-220ENST00000576149 FBXO28Q9NVF7 368 aa11.05□□□□□ -0.64
VPS53-220ENST00000576149 SEL1LQ9UBV2 794 aa11.05□□□□□ -0.64
VPS53-220ENST00000576149 PGAP2Q9UHJ9 254 aa11.05□□□□□ -0.64
VPS53-220ENST00000576149 ADAM21Q9UKJ8 722 aa11.05□□□□□ -0.64
VPS53-220ENST00000576149 PCDHGC5Q9Y5F6 944 aa11.05□□□□□ -0.64
VPS53-220ENST00000576149 BZW2Q9Y6E2 419 aaKnown RBP11.05□□□□□ -0.64
VPS53-220ENST00000576149 COL4A5P29400 1685 aa11.05□□□□□ -0.64
VPS53-220ENST00000576149 FRMPD4Q14CM0 1322 aa11.04□□□□□ -0.64
VPS53-220ENST00000576149 SHTN1A0MZ66 631 aa11.04□□□□□ -0.64
VPS53-220ENST00000576149 N4BP1O75113 896 aaKnown RBP11.04□□□□□ -0.64
VPS53-220ENST00000576149 ZNF131P52739 623 aa11.04□□□□□ -0.64
VPS53-220ENST00000576149 PTK2Q05397 1052 aa11.04□□□□□ -0.64
VPS53-220ENST00000576149 KIAA0753Q2KHM9 967 aa11.04□□□□□ -0.64
VPS53-220ENST00000576149 C10orf76Q5T2E6 689 aa11.04□□□□□ -0.64
VPS53-220ENST00000576149 CCDC181Q5TID7 509 aa11.04□□□□□ -0.64
VPS53-220ENST00000576149 TCERG1LQ5VWI1 586 aa11.04□□□□□ -0.64
VPS53-220ENST00000576149 GBP6Q6ZN66 633 aa11.04□□□□□ -0.64
VPS53-220ENST00000576149 EXOC4Q96A65 974 aa11.04□□□□□ -0.64
VPS53-220ENST00000576149 SPAG5Q96R06 1193 aa11.04□□□□□ -0.64
VPS53-220ENST00000576149 CAMKK2Q96RR4 588 aa11.04□□□□□ -0.64
VPS53-220ENST00000576149 FIZ1Q96SL8 496 aa11.04□□□□□ -0.64
VPS53-220ENST00000576149 PSMB7Q99436 277 aa11.04□□□□□ -0.64
VPS53-220ENST00000576149 GLIS2Q9BZE0 524 aaPredicted RBP11.04□□□□□ -0.64
VPS53-220ENST00000576149 UNC45AQ9H3U1 944 aa11.04□□□□□ -0.64
VPS53-220ENST00000576149 SIX2Q9NPC8 291 aa11.04□□□□□ -0.64
VPS53-220ENST00000576149 KCND2Q9NZV8 630 aa11.04□□□□□ -0.64
VPS53-220ENST00000576149 WRAP73Q9P2S5 460 aaPredicted RBP11.04□□□□□ -0.64
VPS53-220ENST00000576149 GTPBP10A4D1E9 387 aaKnown RBP11.04□□□□□ -0.64
VPS53-220ENST00000576149 BTNL10A8MVZ5 291 aa11.04□□□□□ -0.64
VPS53-220ENST00000576149 PALMO75781 387 aa11.04□□□□□ -0.64
VPS53-220ENST00000576149 MYBL2P10244 700 aa11.04□□□□□ -0.64
VPS53-220ENST00000576149 PRKCIP41743 596 aa11.04□□□□□ -0.64
VPS53-220ENST00000576149 PAFAH1B1P43034 410 aa11.04□□□□□ -0.64
VPS53-220ENST00000576149 GYS2P54840 703 aa11.04□□□□□ -0.64
VPS53-220ENST00000576149 MAP3K10Q02779 954 aa11.04□□□□□ -0.64
VPS53-220ENST00000576149 ENOX2Q16206 610 aaKnown RBP11.04□□□□□ -0.64
VPS53-220ENST00000576149 ZC2HC1CQ53FD0 456 aaPredicted RBP11.04□□□□□ -0.64
VPS53-220ENST00000576149 ZNF720Q7Z2F6 126 aa11.04□□□□□ -0.64
VPS53-220ENST00000576149 ZNF571Q7Z3V5 609 aaPredicted RBP11.04□□□□□ -0.64
VPS53-220ENST00000576149 RBM46Q8TBY0 533 aaKnown RBP11.04□□□□□ -0.64
VPS53-220ENST00000576149 LRRC1Q9BTT6 524 aa11.04□□□□□ -0.64
VPS53-220ENST00000576149 PACSIN1Q9BY11 444 aa11.04□□□□□ -0.64
VPS53-220ENST00000576149 MED4Q9NPJ6 270 aa11.04□□□□□ -0.64
VPS53-220ENST00000576149 RNF14Q9UBS8 474 aa11.04□□□□□ -0.64
VPS53-220ENST00000576149 ODF2LQ9ULJ1 636 aa11.04□□□□□ -0.64
VPS53-220ENST00000576149 PCDHB13Q9Y5F0 798 aa11.04□□□□□ -0.64
VPS53-220ENST00000576149 UBE4BO95155 1302 aa11.03□□□□□ -0.64
VPS53-220ENST00000576149 KIF13BQ9NQT8 1826 aa11.03□□□□□ -0.64
VPS53-220ENST00000576149 IPO5O00410 1097 aaKnown RBP11.03□□□□□ -0.64
VPS53-220ENST00000576149 ASNSP08243 561 aa11.03□□□□□ -0.64
VPS53-220ENST00000576149 PSMC2P35998 433 aaKnown RBP11.03□□□□□ -0.64
VPS53-220ENST00000576149 PTGER2P43116 358 aa11.03□□□□□ -0.64
VPS53-220ENST00000576149 AARSP49588 968 aaKnown RBP eCLIP11.03□□□□□ -0.64
VPS53-220ENST00000576149 HSD17B4P51659 736 aa11.03□□□□□ -0.64
VPS53-220ENST00000576149 JAM2P57087 298 aa11.03□□□□□ -0.64
VPS53-220ENST00000576149 EN1Q05925 392 aaPredicted RBP11.03□□□□□ -0.64
VPS53-220ENST00000576149 CFAP221Q4G0U5 840 aa11.03□□□□□ -0.64
VPS53-220ENST00000576149 HSP90B2PQ58FF3 399 aa11.03□□□□□ -0.64
VPS53-220ENST00000576149 AGBL3Q8NEM8 1001 aa11.03□□□□□ -0.64
VPS53-220ENST00000576149 FAM71BQ8TC56 605 aa11.03□□□□□ -0.64
VPS53-220ENST00000576149 RIT2Q99578 217 aa11.03□□□□□ -0.64
VPS53-220ENST00000576149 MXRA8Q9BRK3 442 aa11.03□□□□□ -0.64
VPS53-220ENST00000576149 TEKT3Q9BXF9 490 aa11.03□□□□□ -0.64
VPS53-220ENST00000576149 PSD3Q9NYI0 1048 aa11.03□□□□□ -0.64
VPS53-220ENST00000576149 SMARCAL1Q9NZC9 954 aa11.03□□□□□ -0.64
VPS53-220ENST00000576149 EHD2Q9NZN4 543 aa11.03□□□□□ -0.64
VPS53-220ENST00000576149 VPS18Q9P253 973 aa11.03□□□□□ -0.64
VPS53-220ENST00000576149 RBBP6Q7Z6E9 1792 aaKnown RBP11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms