RNA–Protein interactions for RNA: ENST00000572665.1

CIITA-208, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 560 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-208ENST00000572665 NYAP2Q9P242 653 aa10.98□□□□□ -0.65
CIITA-208ENST00000572665 CNPY2Q9Y2B0 182 aa10.98□□□□□ -0.65
CIITA-208ENST00000572665 SAMM50Q9Y512 469 aa10.98□□□□□ -0.65
CIITA-208ENST00000572665 TTC41PQ6P2S7 1318 aa10.98□□□□□ -0.65
CIITA-208ENST00000572665 VWA5AO00534 786 aa10.97□□□□□ -0.65
CIITA-208ENST00000572665 TM4SF5O14894 197 aa10.97□□□□□ -0.65
CIITA-208ENST00000572665 SMARCA5O60264 1052 aaPredicted RBP10.97□□□□□ -0.65
CIITA-208ENST00000572665 COBLO75128 1261 aa10.97□□□□□ -0.65
CIITA-208ENST00000572665 ZBED4O75132 1171 aa10.97□□□□□ -0.65
CIITA-208ENST00000572665 LORP23490 312 aaPredicted RBP10.97□□□□□ -0.65
CIITA-208ENST00000572665 RPS26P62854 115 aaKnown RBP10.97□□□□□ -0.65
CIITA-208ENST00000572665 SNRPNP63162 240 aaKnown RBP10.97□□□□□ -0.65
CIITA-208ENST00000572665 AP3B2Q13367 1082 aa10.97□□□□□ -0.65
CIITA-208ENST00000572665 KIAA1755Q5JYT7 1200 aa10.97□□□□□ -0.65
CIITA-208ENST00000572665 GJC2Q5T442 439 aaPredicted RBP10.97□□□□□ -0.65
CIITA-208ENST00000572665 RASIP1Q5U651 963 aa10.97□□□□□ -0.65
CIITA-208ENST00000572665 LINC00114Q6XXX2 140 aa10.97□□□□□ -0.65
CIITA-208ENST00000572665 SLC39A5Q6ZMH5 540 aa10.97□□□□□ -0.65
CIITA-208ENST00000572665 AGMOQ6ZNB7 445 aa10.97□□□□□ -0.65
CIITA-208ENST00000572665 CLEC10AQ8IUN9 316 aa10.97□□□□□ -0.65
CIITA-208ENST00000572665 MAP4K3Q8IVH8 894 aa10.97□□□□□ -0.65
CIITA-208ENST00000572665 SLC17A8Q8NDX2 589 aa10.97□□□□□ -0.65
CIITA-208ENST00000572665 STK35Q8TDR2 534 aa10.97□□□□□ -0.65
CIITA-208ENST00000572665 TRIM11Q96F44 468 aa10.97□□□□□ -0.65
CIITA-208ENST00000572665 RHOVQ96L33 236 aa10.97□□□□□ -0.65
CIITA-208ENST00000572665 TINF2Q9BSI4 451 aa10.97□□□□□ -0.65
CIITA-208ENST00000572665 TEX13BQ9BXU2 312 aa10.97□□□□□ -0.65
CIITA-208ENST00000572665 TLR6Q9Y2C9 796 aa10.97□□□□□ -0.65
CIITA-208ENST00000572665 ROBO3Q96MS0 1386 aa10.97□□□□□ -0.65
CIITA-208ENST00000572665 GREB1LQ9C091 1923 aaPredicted RBP10.97□□□□□ -0.65
CIITA-208ENST00000572665 GSG1L2A8MUP6 293 aa10.96□□□□□ -0.65
CIITA-208ENST00000572665 F5H6K3 240 aa10.96□□□□□ -0.65
CIITA-208ENST00000572665 GPAA1O43292 621 aa10.96□□□□□ -0.65
CIITA-208ENST00000572665 EIF4EBP3O60516 100 aaPredicted RBP10.96□□□□□ -0.65
CIITA-208ENST00000572665 TTLL1O95922 423 aa10.96□□□□□ -0.65
CIITA-208ENST00000572665 AKR1A1P14550 325 aa10.96□□□□□ -0.65
CIITA-208ENST00000572665 ARNTP27540 789 aa10.96□□□□□ -0.65
CIITA-208ENST00000572665 RTP1P59025 263 aa10.96□□□□□ -0.65
CIITA-208ENST00000572665 KLRC3Q07444 240 aa10.96□□□□□ -0.65
CIITA-208ENST00000572665 FAM83BQ5T0W9 1011 aa10.96□□□□□ -0.65
CIITA-208ENST00000572665 DTWD1Q8N5C7 304 aa10.96□□□□□ -0.65
CIITA-208ENST00000572665 DEFB123Q8N688 67 aa10.96□□□□□ -0.65
CIITA-208ENST00000572665 TRPV1Q8NER1 839 aa10.96□□□□□ -0.65
CIITA-208ENST00000572665 DDX11Q96FC9 970 aa10.96□□□□□ -0.65
CIITA-208ENST00000572665 KLHDC7BQ96G42 594 aa10.96□□□□□ -0.65
CIITA-208ENST00000572665 NRSN2Q9GZP1 204 aa10.96□□□□□ -0.65
CIITA-208ENST00000572665 XPNPEP3Q9NQH7 507 aa10.96□□□□□ -0.65
CIITA-208ENST00000572665 FBXO40Q9UH90 709 aa10.96□□□□□ -0.65
CIITA-208ENST00000572665 ATP11BQ9Y2G3 1177 aa10.96□□□□□ -0.65
CIITA-208ENST00000572665 SYNGAP1Q96PV0 1343 aa10.95□□□□□ -0.66
CIITA-208ENST00000572665 ATP2A1O14983 1001 aa10.95□□□□□ -0.66
CIITA-208ENST00000572665 DEAF1O75398 565 aaPredicted RBP10.95□□□□□ -0.66
CIITA-208ENST00000572665 TSPY3P0CV98 308 aa10.95□□□□□ -0.66
CIITA-208ENST00000572665 TSPY8P0CW00 308 aa10.95□□□□□ -0.66
CIITA-208ENST00000572665 TFE3P19532 575 aaPredicted RBP10.95□□□□□ -0.66
CIITA-208ENST00000572665 OAZ1P54368 228 aa10.95□□□□□ -0.66
CIITA-208ENST00000572665 LRRC41Q15345 812 aa10.95□□□□□ -0.66
CIITA-208ENST00000572665 C20orf194Q5TEA3 1177 aa10.95□□□□□ -0.66
CIITA-208ENST00000572665 SNRNP48Q6IEG0 339 aaKnown RBP10.95□□□□□ -0.66
CIITA-208ENST00000572665 KLHL23Q8NBE8 558 aa10.95□□□□□ -0.66
CIITA-208ENST00000572665 GALNT11Q8NCW6 608 aa10.95□□□□□ -0.66
CIITA-208ENST00000572665 NUP133Q8WUM0 1156 aa10.95□□□□□ -0.66
CIITA-208ENST00000572665 OSBP2Q969R2 916 aa10.95□□□□□ -0.66
CIITA-208ENST00000572665 MKL1Q969V6 931 aa10.95□□□□□ -0.66
CIITA-208ENST00000572665 FSD1Q9BTV5 496 aa10.95□□□□□ -0.66
CIITA-208ENST00000572665 NAPBQ9H115 298 aa10.95□□□□□ -0.66
CIITA-208ENST00000572665 SPC25Q9HBM1 224 aa10.95□□□□□ -0.66
CIITA-208ENST00000572665 PRDM5Q9NQX1 630 aaPredicted RBP10.95□□□□□ -0.66
CIITA-208ENST00000572665 FBXO28Q9NVF7 368 aa10.95□□□□□ -0.66
CIITA-208ENST00000572665 CLIP2Q9UDT6 1046 aa10.95□□□□□ -0.66
CIITA-208ENST00000572665 ADAMTS1Q9UHI8 967 aa10.95□□□□□ -0.66
CIITA-208ENST00000572665 FEM1BQ9UK73 627 aa10.95□□□□□ -0.66
CIITA-208ENST00000572665 ZNF214Q9UL59 606 aaPredicted RBP10.95□□□□□ -0.66
CIITA-208ENST00000572665 PGK2P07205 417 aa10.94□□□□□ -0.66
CIITA-208ENST00000572665 SNX17Q15036 470 aa10.94□□□□□ -0.66
CIITA-208ENST00000572665 ZNF792Q3KQV3 632 aa10.94□□□□□ -0.66
CIITA-208ENST00000572665 NAALADL2Q58DX5 795 aa10.94□□□□□ -0.66
CIITA-208ENST00000572665 PRAMEF19Q5SWL8 479 aa10.94□□□□□ -0.66
CIITA-208ENST00000572665 ANO1Q5XXA6 986 aa10.94□□□□□ -0.66
CIITA-208ENST00000572665 FAM109BQ6ICB4 259 aaPredicted RBP10.94□□□□□ -0.66
CIITA-208ENST00000572665 PDZD3Q86UT5 571 aa10.94□□□□□ -0.66
CIITA-208ENST00000572665 IFNL3Q8IZI9 196 aa10.94□□□□□ -0.66
CIITA-208ENST00000572665 GMCL1P1Q8NEA9 526 aa10.94□□□□□ -0.66
CIITA-208ENST00000572665 CHST13Q8NET6 341 aa10.94□□□□□ -0.66
CIITA-208ENST00000572665 EMILIN2Q9BXX0 1053 aa10.94□□□□□ -0.66
CIITA-208ENST00000572665 FAM184BQ9ULE4 1060 aa10.94□□□□□ -0.66
CIITA-208ENST00000572665 STXBP5LQ9Y2K9 1186 aa10.94□□□□□ -0.66
CIITA-208ENST00000572665 TACC3Q9Y6A5 838 aa10.94□□□□□ -0.66
CIITA-208ENST00000572665 SMCHD1A6NHR9 2005 aa10.94□□□□□ -0.66
CIITA-208ENST00000572665 LTBP2Q14767 1821 aa10.93□□□□□ -0.66
CIITA-208ENST00000572665 MROH7Q68CQ1 1323 aa10.93□□□□□ -0.66
CIITA-208ENST00000572665 NDUFB10O96000 172 aa10.93□□□□□ -0.66
CIITA-208ENST00000572665 EIF4A3P38919 411 aaKnown RBP10.93□□□□□ -0.66
CIITA-208ENST00000572665 ADCYAP1R1P41586 468 aa10.93□□□□□ -0.66
CIITA-208ENST00000572665 STAT2P52630 851 aa10.93□□□□□ -0.66
CIITA-208ENST00000572665 LMNB2Q03252 620 aa10.93□□□□□ -0.66
CIITA-208ENST00000572665 ZNF252P-AS1Q0IIN9 211 aa10.93□□□□□ -0.66
CIITA-208ENST00000572665 SUZ12Q15022 739 aaKnown RBP10.93□□□□□ -0.66
CIITA-208ENST00000572665 LRRC14Q15048 493 aa10.93□□□□□ -0.66
CIITA-208ENST00000572665 FAM47AQ5JRC9 791 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms