RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 MYOCDQ8IZQ8 938 aa22.68■■□□□ 1.22
NUP88-204ENST00000572290 TBC1D32Q96NH3 1257 aa22.68■■□□□ 1.22
NUP88-204ENST00000572290 CELF4Q9BZC1 486 aaKnown RBP22.68■■□□□ 1.22
NUP88-204ENST00000572290 VAV3Q9UKW4 847 aa22.68■■□□□ 1.22
NUP88-204ENST00000572290 SQORQ9Y6N5 450 aa22.68■■□□□ 1.22
NUP88-204ENST00000572290 BAG4O95429 457 aaKnown RBP22.67■■□□□ 1.22
NUP88-204ENST00000572290 PPP2R5CQ13362 524 aa22.67■■□□□ 1.22
NUP88-204ENST00000572290 FAM117BQ6P1L5 589 aa22.67■■□□□ 1.22
NUP88-204ENST00000572290 USP38Q8NB14 1042 aa22.67■■□□□ 1.22
NUP88-204ENST00000572290 HAS1Q92839 578 aa22.67■■□□□ 1.22
NUP88-204ENST00000572290 RAD9AQ99638 391 aa22.67■■□□□ 1.22
NUP88-204ENST00000572290 KDM3AQ9Y4C1 1321 aa22.66■■□□□ 1.22
NUP88-204ENST00000572290 LOC101059915A0A1B0GWI6 518 aaPredicted RBP22.66■■□□□ 1.22
NUP88-204ENST00000572290 MAGEB2O15479 319 aa22.66■■□□□ 1.22
NUP88-204ENST00000572290 METTL13Q8N6R0 699 aa22.66■■□□□ 1.22
NUP88-204ENST00000572290 GAS2L1Q99501 681 aaPredicted RBP22.66■■□□□ 1.22
NUP88-204ENST00000572290 AGO3Q9H9G7 860 aaKnown RBP22.66■■□□□ 1.22
NUP88-204ENST00000572290 TRIP12Q14669 1992 aaPredicted RBP22.66■■□□□ 1.22
NUP88-204ENST00000572290 EML1O00423 815 aa22.65■■□□□ 1.22
NUP88-204ENST00000572290 CD52P31358 61 aa22.65■■□□□ 1.22
NUP88-204ENST00000572290 TAP1Q03518 808 aa22.65■■□□□ 1.22
NUP88-204ENST00000572290 XKR3Q5GH77 459 aa22.65■■□□□ 1.22
NUP88-204ENST00000572290 SLFN12Q8IYM2 578 aa22.65■■□□□ 1.22
NUP88-204ENST00000572290 FBXO18Q8NFZ0 1043 aa22.65■■□□□ 1.22
NUP88-204ENST00000572290 TET1Q8NFU7 2136 aa22.64■■□□□ 1.22
NUP88-204ENST00000572290 LCHNA4D1U4 455 aa22.64■■□□□ 1.21
NUP88-204ENST00000572290 ARHGEF15O94989 841 aa22.64■■□□□ 1.21
NUP88-204ENST00000572290 PSMC5P62195 406 aa22.64■■□□□ 1.21
NUP88-204ENST00000572290 BANK1Q8NDB2 785 aa22.64■■□□□ 1.21
NUP88-204ENST00000572290 MAFAQ8NHW3 353 aaPredicted RBP22.64■■□□□ 1.21
NUP88-204ENST00000572290 TOP1MTQ969P6 601 aa22.64■■□□□ 1.21
NUP88-204ENST00000572290 NIFKQ9BYG3 293 aaKnown RBP22.64■■□□□ 1.21
NUP88-204ENST00000572290 SEPT9Q9UHD8 586 aaPredicted RBP22.64■■□□□ 1.21
NUP88-204ENST00000572290 GINS2Q9Y248 185 aa22.64■■□□□ 1.21
NUP88-204ENST00000572290 DKC1O60832 514 aaKnown RBP eCLIP22.63■■□□□ 1.21
NUP88-204ENST00000572290 STBD1O95210 358 aa22.63■■□□□ 1.21
NUP88-204ENST00000572290 TMOD1P28289 359 aa22.63■■□□□ 1.21
NUP88-204ENST00000572290 MCM2P49736 904 aa22.63■■□□□ 1.21
NUP88-204ENST00000572290 CLCN3P51790 818 aa22.63■■□□□ 1.21
NUP88-204ENST00000572290 PAK2Q13177 524 aa22.63■■□□□ 1.21
NUP88-204ENST00000572290 EPHA7Q15375 998 aa22.63■■□□□ 1.21
NUP88-204ENST00000572290 CALCRLQ16602 461 aa22.63■■□□□ 1.21
NUP88-204ENST00000572290 EFCAB12Q6NXP0 572 aa22.63■■□□□ 1.21
NUP88-204ENST00000572290 TMX3Q96JJ7 454 aa22.63■■□□□ 1.21
NUP88-204ENST00000572290 FOXP1Q9H334 677 aaPredicted RBP22.63■■□□□ 1.21
NUP88-204ENST00000572290 CERS4Q9HA82 394 aa22.63■■□□□ 1.21
NUP88-204ENST00000572290 PADI3Q9ULW8 664 aa22.63■■□□□ 1.21
NUP88-204ENST00000572290 INSL6Q9Y581 213 aa22.63■■□□□ 1.21
NUP88-204ENST00000572290 DDX11L8A8MPP1 907 aa22.62■■□□□ 1.21
NUP88-204ENST00000572290 WNT7AO00755 349 aa22.62■■□□□ 1.21
NUP88-204ENST00000572290 ENPP3O14638 875 aa22.62■■□□□ 1.21
NUP88-204ENST00000572290 NEMFO60524 1076 aa22.62■■□□□ 1.21
NUP88-204ENST00000572290 UPP2O95045 317 aa22.62■■□□□ 1.21
NUP88-204ENST00000572290 P4HBP07237 508 aaKnown RBP22.62■■□□□ 1.21
NUP88-204ENST00000572290 ATP2B1P20020 1258 aa22.62■■□□□ 1.21
NUP88-204ENST00000572290 QARSP47897 775 aaKnown RBP22.62■■□□□ 1.21
NUP88-204ENST00000572290 TBC1D8BQ0IIM8 1120 aa22.62■■□□□ 1.21
NUP88-204ENST00000572290 TARBP2Q15633 366 aaKnown RBP22.62■■□□□ 1.21
NUP88-204ENST00000572290 MTERF2Q49AM1 385 aa22.62■■□□□ 1.21
NUP88-204ENST00000572290 NCAPH2Q6IBW4 605 aa22.62■■□□□ 1.21
NUP88-204ENST00000572290 LRRC71Q8N4P6 559 aa22.62■■□□□ 1.21
NUP88-204ENST00000572290 LINC01465Q8N7H1 131 aa22.62■■□□□ 1.21
NUP88-204ENST00000572290 MAP7D2Q96T17 732 aa22.62■■□□□ 1.21
NUP88-204ENST00000572290 PPP1R16BQ96T49 567 aa22.62■■□□□ 1.21
NUP88-204ENST00000572290 FTHL17Q9BXU8 183 aa22.62■■□□□ 1.21
NUP88-204ENST00000572290 CDHR5Q9HBB8 845 aa22.62■■□□□ 1.21
NUP88-204ENST00000572290 CD2BP2O95400 341 aaKnown RBP22.61■■□□□ 1.21
NUP88-204ENST00000572290 VTNP04004 478 aa22.61■■□□□ 1.21
NUP88-204ENST00000572290 CRYBB1P53674 252 aaPredicted RBP22.61■■□□□ 1.21
NUP88-204ENST00000572290 HTRA4P83105 476 aaPredicted RBP22.61■■□□□ 1.21
NUP88-204ENST00000572290 SPIRE1Q08AE8 756 aa22.61■■□□□ 1.21
NUP88-204ENST00000572290 GNL2Q13823 731 aaKnown RBP22.61■■□□□ 1.21
NUP88-204ENST00000572290 ADGRE1Q14246 886 aa22.61■■□□□ 1.21
NUP88-204ENST00000572290 KIZQ2M2Z5 673 aa22.61■■□□□ 1.21
NUP88-204ENST00000572290 ARNTL2Q8WYA1 636 aa22.61■■□□□ 1.21
NUP88-204ENST00000572290 SUGCTQ9HAC7 445 aa22.61■■□□□ 1.21
NUP88-204ENST00000572290 PCDHA12Q9UN75 941 aa22.61■■□□□ 1.21
NUP88-204ENST00000572290 AKT3Q9Y243 479 aa22.61■■□□□ 1.21
NUP88-204ENST00000572290 KIF3AQ9Y496 699 aa22.61■■□□□ 1.21
NUP88-204ENST00000572290 TMEM150BA6NC51 233 aa22.6■■□□□ 1.21
NUP88-204ENST00000572290 RPS6KA5O75582 802 aa22.6■■□□□ 1.21
NUP88-204ENST00000572290 IGFBP4P22692 258 aa22.6■■□□□ 1.21
NUP88-204ENST00000572290 NFX1Q12986 1120 aaKnown RBP22.6■■□□□ 1.21
NUP88-204ENST00000572290 TMEM266Q2M3C6 531 aa22.6■■□□□ 1.21
NUP88-204ENST00000572290 YME1L1Q96TA2 773 aa22.6■■□□□ 1.21
NUP88-204ENST00000572290 OSMRQ99650 979 aa22.6■■□□□ 1.21
NUP88-204ENST00000572290 NOC2LQ9Y3T9 749 aaKnown RBP22.6■■□□□ 1.21
NUP88-204ENST00000572290 LINC01553A4QN01 128 aa22.59■■□□□ 1.21
NUP88-204ENST00000572290 GPR32O75388 356 aa22.59■■□□□ 1.21
NUP88-204ENST00000572290 TXKP42681 527 aa22.59■■□□□ 1.21
NUP88-204ENST00000572290 ODR4Q5SWX8 454 aa22.59■■□□□ 1.21
NUP88-204ENST00000572290 ANO5Q75V66 913 aa22.59■■□□□ 1.21
NUP88-204ENST00000572290 NOSTRINQ8IVI9 506 aa22.59■■□□□ 1.21
NUP88-204ENST00000572290 ZNF710Q8N1W2 664 aa22.59■■□□□ 1.21
NUP88-204ENST00000572290 SLC17A8Q8NDX2 589 aa22.59■■□□□ 1.21
NUP88-204ENST00000572290 TMEM40Q8WWA1 233 aa22.59■■□□□ 1.21
NUP88-204ENST00000572290 LINC01599Q8WXQ3 324 aa22.59■■□□□ 1.21
NUP88-204ENST00000572290 MTMR9Q96QG7 549 aa22.59■■□□□ 1.21
NUP88-204ENST00000572290 CEP89Q96ST8 783 aa22.59■■□□□ 1.21
NUP88-204ENST00000572290 SH2D3AQ9BRG2 576 aa22.59■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms