RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 KCNV1Q6PIU1 500 aa11.71□□□□□ -0.53
CCDC40-207ENST00000572253 MOXD1Q6UVY6 613 aa11.71□□□□□ -0.53
CCDC40-207ENST00000572253 CTNNBL1Q8WYA6 563 aaPredicted RBP11.71□□□□□ -0.53
CCDC40-207ENST00000572253 DPH5Q9H2P9 285 aa11.71□□□□□ -0.53
CCDC40-207ENST00000572253 CCNL1Q9UK58 526 aaPredicted RBP11.71□□□□□ -0.53
CCDC40-207ENST00000572253 PCDHA1Q9Y5I3 950 aa11.71□□□□□ -0.53
CCDC40-207ENST00000572253 USP17L15C9J2P7 530 aa11.71□□□□□ -0.53
CCDC40-207ENST00000572253 USP17L13C9JLJ4 530 aa11.71□□□□□ -0.53
CCDC40-207ENST00000572253 USP17L11C9JVI0 530 aa11.71□□□□□ -0.53
CCDC40-207ENST00000572253 USP17L18D6R9N7 530 aa11.71□□□□□ -0.53
CCDC40-207ENST00000572253 USP17L22D6RA61 530 aa11.71□□□□□ -0.53
CCDC40-207ENST00000572253 USP17L17D6RBQ6 530 aa11.71□□□□□ -0.53
CCDC40-207ENST00000572253 USP17L19D6RCP7 530 aa11.71□□□□□ -0.53
CCDC40-207ENST00000572253 USP17L20D6RJB6 530 aa11.71□□□□□ -0.53
CCDC40-207ENST00000572253 SMTNP53814 917 aa11.71□□□□□ -0.53
CCDC40-207ENST00000572253 USP17L24Q0WX57 530 aa11.71□□□□□ -0.53
CCDC40-207ENST00000572253 PRR16Q569H4 304 aa11.71□□□□□ -0.53
CCDC40-207ENST00000572253 USP17L6PQ6QN14 398 aa11.71□□□□□ -0.53
CCDC40-207ENST00000572253 KCTD1Q719H9 257 aa11.71□□□□□ -0.53
CCDC40-207ENST00000572253 CLEC10AQ8IUN9 316 aa11.71□□□□□ -0.53
CCDC40-207ENST00000572253 ARHGEF1Q92888 912 aaKnown RBP11.71□□□□□ -0.53
CCDC40-207ENST00000572253 KCNMB3Q9NPA1 279 aa11.71□□□□□ -0.53
CCDC40-207ENST00000572253 RASAL2Q9UJF2 1139 aa11.71□□□□□ -0.53
CCDC40-207ENST00000572253 DAGLAQ9Y4D2 1042 aa11.71□□□□□ -0.53
CCDC40-207ENST00000572253 COL16A1Q07092 1604 aaPredicted RBP11.71□□□□□ -0.54
CCDC40-207ENST00000572253 PPP1R11O60927 126 aaPredicted RBP11.71□□□□□ -0.54
CCDC40-207ENST00000572253 GCNT3O95395 438 aa11.71□□□□□ -0.54
CCDC40-207ENST00000572253 EPHA7Q15375 998 aa11.71□□□□□ -0.54
CCDC40-207ENST00000572253 GKAP1Q5VSY0 366 aaPredicted RBP11.71□□□□□ -0.54
CCDC40-207ENST00000572253 RASGEF1CQ8N431 466 aa11.71□□□□□ -0.54
CCDC40-207ENST00000572253 ATF5Q9Y2D1 282 aaPredicted RBP11.71□□□□□ -0.54
CCDC40-207ENST00000572253 IGKV6D-41A0A0C4DH26 115 aa11.7□□□□□ -0.54
CCDC40-207ENST00000572253 C6orf229H3BNL8 230 aa11.7□□□□□ -0.54
CCDC40-207ENST00000572253 CHUKO15111 745 aa11.7□□□□□ -0.54
CCDC40-207ENST00000572253 TRAPPC3O43617 180 aa11.7□□□□□ -0.54
CCDC40-207ENST00000572253 MAP2K2P36507 400 aa11.7□□□□□ -0.54
CCDC40-207ENST00000572253 GIT2Q14161 759 aa11.7□□□□□ -0.54
CCDC40-207ENST00000572253 UAP1Q16222 522 aaPredicted RBP11.7□□□□□ -0.54
CCDC40-207ENST00000572253 CCDC50Q8IVM0 306 aa11.7□□□□□ -0.54
CCDC40-207ENST00000572253 P3H4Q92791 437 aa11.7□□□□□ -0.54
CCDC40-207ENST00000572253 PSMD1Q99460 953 aa11.7□□□□□ -0.54
CCDC40-207ENST00000572253 FMO2Q99518 471 aa11.7□□□□□ -0.54
CCDC40-207ENST00000572253 PCDHB13Q9Y5F0 798 aa11.7□□□□□ -0.54
CCDC40-207ENST00000572253 GTPBP10A4D1E9 387 aaKnown RBP11.7□□□□□ -0.54
CCDC40-207ENST00000572253 H0YGN5 161 aa11.7□□□□□ -0.54
CCDC40-207ENST00000572253 TBX3O15119 743 aa11.7□□□□□ -0.54
CCDC40-207ENST00000572253 TTI1O43156 1089 aa11.7□□□□□ -0.54
CCDC40-207ENST00000572253 FGGP02679 453 aa11.7□□□□□ -0.54
CCDC40-207ENST00000572253 ECHS1P30084 290 aa11.7□□□□□ -0.54
CCDC40-207ENST00000572253 TRAPPC3LQ5T215 181 aa11.7□□□□□ -0.54
CCDC40-207ENST00000572253 SLFN11Q7Z7L1 901 aa11.7□□□□□ -0.54
CCDC40-207ENST00000572253 CCDC13Q8IYE1 715 aa11.7□□□□□ -0.54
CCDC40-207ENST00000572253 SYT2Q8N9I0 419 aaPredicted RBP11.7□□□□□ -0.54
CCDC40-207ENST00000572253 RBM17Q96I25 401 aaKnown RBP11.7□□□□□ -0.54
CCDC40-207ENST00000572253 REEP2Q9BRK0 252 aa11.7□□□□□ -0.54
CCDC40-207ENST00000572253 NFS1Q9Y697 457 aa11.7□□□□□ -0.54
CCDC40-207ENST00000572253 MYO3BQ8WXR4 1341 aa11.7□□□□□ -0.54
CCDC40-207ENST00000572253 DDX60LQ5H9U9 1706 aaKnown RBP11.7□□□□□ -0.54
CCDC40-207ENST00000572253 CYP3A7-CYP3A51PA0A087WV96 503 aa11.7□□□□□ -0.54
CCDC40-207ENST00000572253 GAP43P17677 238 aa11.7□□□□□ -0.54
CCDC40-207ENST00000572253 CYP3A7P24462 503 aa11.7□□□□□ -0.54
CCDC40-207ENST00000572253 MAGOHP61326 146 aaKnown RBP11.7□□□□□ -0.54
CCDC40-207ENST00000572253 GABPAQ06546 454 aa11.7□□□□□ -0.54
CCDC40-207ENST00000572253 ARSHQ5FYA8 562 aa11.7□□□□□ -0.54
CCDC40-207ENST00000572253 TMC3Q7Z5M5 1100 aa11.7□□□□□ -0.54
CCDC40-207ENST00000572253 NT5DC3Q86UY8 548 aa11.7□□□□□ -0.54
CCDC40-207ENST00000572253 RFFLQ8WZ73 363 aa11.7□□□□□ -0.54
CCDC40-207ENST00000572253 MAGOHBQ96A72 148 aaKnown RBP11.7□□□□□ -0.54
CCDC40-207ENST00000572253 TRIM31Q9BZY9 425 aa11.7□□□□□ -0.54
CCDC40-207ENST00000572253 GOPCQ9HD26 462 aa11.7□□□□□ -0.54
CCDC40-207ENST00000572253 KLC4Q9NSK0 619 aa11.7□□□□□ -0.54
CCDC40-207ENST00000572253 SLC12A6Q9UHW9 1150 aa11.7□□□□□ -0.54
CCDC40-207ENST00000572253 MEIS1O00470 390 aa11.69□□□□□ -0.54
CCDC40-207ENST00000572253 FAM13AO94988 1023 aa11.69□□□□□ -0.54
CCDC40-207ENST00000572253 RPA1P27694 616 aa11.69□□□□□ -0.54
CCDC40-207ENST00000572253 GALCP54803 685 aa11.69□□□□□ -0.54
CCDC40-207ENST00000572253 ARHGAP4P98171 946 aa11.69□□□□□ -0.54
CCDC40-207ENST00000572253 DDR1Q08345 913 aa11.69□□□□□ -0.54
CCDC40-207ENST00000572253 QRICH1Q2TAL8 776 aa11.69□□□□□ -0.54
CCDC40-207ENST00000572253 SPDYCQ5MJ68 293 aa11.69□□□□□ -0.54
CCDC40-207ENST00000572253 CROCCP2Q86T23 111 aa11.69□□□□□ -0.54
CCDC40-207ENST00000572253 CATSPER3Q86XQ3 398 aa11.69□□□□□ -0.54
CCDC40-207ENST00000572253 GPATCH11Q8N954 259 aa11.69□□□□□ -0.54
CCDC40-207ENST00000572253 CCDC17Q96LX7 622 aa11.69□□□□□ -0.54
CCDC40-207ENST00000572253 SEPT11Q9NVA2 429 aaKnown RBP11.69□□□□□ -0.54
CCDC40-207ENST00000572253 SPDYE3A6NKU9 549 aa11.69□□□□□ -0.54
CCDC40-207ENST00000572253 AKAP3O75969 853 aa11.69□□□□□ -0.54
CCDC40-207ENST00000572253 ITGA4P13612 1032 aa11.69□□□□□ -0.54
CCDC40-207ENST00000572253 CASP5P51878 434 aa11.69□□□□□ -0.54
CCDC40-207ENST00000572253 STXBP4Q6ZWJ1 553 aa11.69□□□□□ -0.54
CCDC40-207ENST00000572253 SEC16BQ96JE7 1060 aa11.69□□□□□ -0.54
CCDC40-207ENST00000572253 DDX20Q9UHI6 824 aaKnown RBP11.69□□□□□ -0.54
CCDC40-207ENST00000572253 DAAM1Q9Y4D1 1078 aa11.69□□□□□ -0.54
CCDC40-207ENST00000572253 DDX3XO00571 662 aaKnown RBP eCLIP11.69□□□□□ -0.54
CCDC40-207ENST00000572253 FOSP01100 380 aaPredicted RBP11.69□□□□□ -0.54
CCDC40-207ENST00000572253 TNFAIP3P21580 790 aa11.69□□□□□ -0.54
CCDC40-207ENST00000572253 TMOD1P28289 359 aa11.69□□□□□ -0.54
CCDC40-207ENST00000572253 PSMC2P35998 433 aaKnown RBP11.69□□□□□ -0.54
CCDC40-207ENST00000572253 ZNF76P36508 570 aa11.69□□□□□ -0.54
CCDC40-207ENST00000572253 GTF2IP78347 998 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms