RNA–Protein interactions for RNA: ENST00000568488.5

CLK3-223, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 481 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-223ENST00000568488 RPS6KA5O75582 802 aa18.59■□□□□ 0.57
CLK3-223ENST00000568488 FGFR1P11362 822 aa18.59■□□□□ 0.57
CLK3-223ENST00000568488 SDSP20132 328 aa18.59■□□□□ 0.57
CLK3-223ENST00000568488 MTHFRP42898 656 aa18.59■□□□□ 0.57
CLK3-223ENST00000568488 PLCB3Q01970 1234 aa18.59■□□□□ 0.57
CLK3-223ENST00000568488 GRM4Q14833 912 aa18.59■□□□□ 0.57
CLK3-223ENST00000568488 SLC24A5Q71RS6 500 aa18.59■□□□□ 0.57
CLK3-223ENST00000568488 TNPO1Q92973 898 aaKnown RBP18.59■□□□□ 0.57
CLK3-223ENST00000568488 GPRASP2Q96D09 838 aa18.59■□□□□ 0.57
CLK3-223ENST00000568488 AZI2Q9H6S1 392 aa18.59■□□□□ 0.57
CLK3-223ENST00000568488 RGS18Q9NS28 235 aa18.59■□□□□ 0.57
CLK3-223ENST00000568488 C1orf112Q9NSG2 853 aa18.59■□□□□ 0.57
CLK3-223ENST00000568488 DBR1Q9UK59 544 aaKnown RBP18.59■□□□□ 0.57
CLK3-223ENST00000568488 NOC2LQ9Y3T9 749 aaKnown RBP18.59■□□□□ 0.57
CLK3-223ENST00000568488 HCFC2Q9Y5Z7 792 aa18.59■□□□□ 0.57
CLK3-223ENST00000568488 BAZ2BQ9UIF8 2168 aaKnown RBP18.58■□□□□ 0.57
CLK3-223ENST00000568488 KRT37O76014 449 aa18.58■□□□□ 0.56
CLK3-223ENST00000568488 PDE4AP27815 886 aa18.58■□□□□ 0.56
CLK3-223ENST00000568488 KRT17Q04695 432 aa18.58■□□□□ 0.56
CLK3-223ENST00000568488 SEC23AQ15436 765 aa18.58■□□□□ 0.56
CLK3-223ENST00000568488 RARS2Q5T160 578 aaKnown RBP18.58■□□□□ 0.56
CLK3-223ENST00000568488 CWF19L1Q69YN2 538 aaKnown RBP18.58■□□□□ 0.56
CLK3-223ENST00000568488 CWC27Q6UX04 472 aaKnown RBP18.58■□□□□ 0.56
CLK3-223ENST00000568488 KIAA2013Q8IYS2 634 aa18.58■□□□□ 0.56
CLK3-223ENST00000568488 ZDHHC14Q8IZN3 488 aa18.58■□□□□ 0.56
CLK3-223ENST00000568488 NME8Q8N427 588 aa18.58■□□□□ 0.56
CLK3-223ENST00000568488 C12orf76Q8N812 135 aaPredicted RBP18.58■□□□□ 0.56
CLK3-223ENST00000568488 ERVK-5Q9HDB9 667 aa18.58■□□□□ 0.56
CLK3-223ENST00000568488 FNDC1Q4ZHG4 1894 aaPredicted RBP18.58■□□□□ 0.56
CLK3-223ENST00000568488 LOXHD1Q8IVV2 1947 aa18.57■□□□□ 0.56
CLK3-223ENST00000568488 SMIM35A0A1B0GVV1 85 aa18.57■□□□□ 0.56
CLK3-223ENST00000568488 ARP10275 920 aa18.57■□□□□ 0.56
CLK3-223ENST00000568488 AOC1P19801 751 aa18.57■□□□□ 0.56
CLK3-223ENST00000568488 PBX3P40426 434 aa18.57■□□□□ 0.56
CLK3-223ENST00000568488 PLCB4Q15147 1175 aa18.57■□□□□ 0.56
CLK3-223ENST00000568488 KANK3Q6NY19 840 aa18.57■□□□□ 0.56
CLK3-223ENST00000568488 KCNT2Q6UVM3 1135 aa18.57■□□□□ 0.56
CLK3-223ENST00000568488 CYB5R4Q7L1T6 521 aa18.57■□□□□ 0.56
CLK3-223ENST00000568488 CCDC105Q8IYK2 499 aa18.57■□□□□ 0.56
CLK3-223ENST00000568488 PLCD3Q8N3E9 789 aa18.57■□□□□ 0.56
CLK3-223ENST00000568488 DTWD2Q8NBA8 298 aa18.57■□□□□ 0.56
CLK3-223ENST00000568488 PCYT2Q99447 389 aa18.57■□□□□ 0.56
CLK3-223ENST00000568488 CDHR5Q9HBB8 845 aa18.57■□□□□ 0.56
CLK3-223ENST00000568488 ST3GAL5Q9UNP4 418 aa18.57■□□□□ 0.56
CLK3-223ENST00000568488 KDM3AQ9Y4C1 1321 aa18.56■□□□□ 0.56
CLK3-223ENST00000568488 C9IYK1 514 aa18.56■□□□□ 0.56
CLK3-223ENST00000568488 LMNAP02545 664 aaKnown RBP18.56■□□□□ 0.56
CLK3-223ENST00000568488 ITGB5P18084 799 aa18.56■□□□□ 0.56
CLK3-223ENST00000568488 MTMR1Q13613 665 aa18.56■□□□□ 0.56
CLK3-223ENST00000568488 SMC1AQ14683 1233 aaKnown RBP18.56■□□□□ 0.56
CLK3-223ENST00000568488 ATAT1Q5SQI0 421 aa18.56■□□□□ 0.56
CLK3-223ENST00000568488 ODR4Q5SWX8 454 aa18.56■□□□□ 0.56
CLK3-223ENST00000568488 ZNF558Q96NG5 402 aa18.56■□□□□ 0.56
CLK3-223ENST00000568488 HINFPQ9BQA5 517 aa18.56■□□□□ 0.56
CLK3-223ENST00000568488 FBXL21Q9UKT6 434 aa18.56■□□□□ 0.56
CLK3-223ENST00000568488 STK25O00506 426 aa18.55■□□□□ 0.56
CLK3-223ENST00000568488 MEIS2O14770 477 aa18.55■□□□□ 0.56
CLK3-223ENST00000568488 GPR182O15218 404 aa18.55■□□□□ 0.56
CLK3-223ENST00000568488 CLASP2O75122 1294 aaKnown RBP18.55■□□□□ 0.56
CLK3-223ENST00000568488 NPR3P17342 541 aa18.55■□□□□ 0.56
CLK3-223ENST00000568488 MTHFD1LQ6UB35 978 aa18.55■□□□□ 0.56
CLK3-223ENST00000568488 LRRC55Q6ZSA7 311 aa18.55■□□□□ 0.56
CLK3-223ENST00000568488 MRPL43Q8N983 215 aaKnown RBP18.55■□□□□ 0.56
CLK3-223ENST00000568488 TMEM87AQ8NBN3 555 aa18.55■□□□□ 0.56
CLK3-223ENST00000568488 RTP3Q9BQQ7 232 aa18.55■□□□□ 0.56
CLK3-223ENST00000568488 TMEM161AQ9NX61 479 aa18.55■□□□□ 0.56
CLK3-223ENST00000568488 SPG21Q9NZD8 308 aa18.55■□□□□ 0.56
CLK3-223ENST00000568488 DMXL1Q9Y485 3027 aa18.55■□□□□ 0.56
CLK3-223ENST00000568488 ZNF292O60281 2723 aa18.54■□□□□ 0.56
CLK3-223ENST00000568488 C2orf71A6NGG8 1288 aa18.54■□□□□ 0.56
CLK3-223ENST00000568488 KLRC1P26715 233 aa18.54■□□□□ 0.56
CLK3-223ENST00000568488 PPM1AP35813 382 aa18.54■□□□□ 0.56
CLK3-223ENST00000568488 PUM1Q14671 1186 aaKnown RBP eCLIP18.54■□□□□ 0.56
CLK3-223ENST00000568488 TMEM40Q8WWA1 233 aa18.54■□□□□ 0.56
CLK3-223ENST00000568488 PPP1R16BQ96T49 567 aa18.54■□□□□ 0.56
CLK3-223ENST00000568488 DSCC1Q9BVC3 393 aa18.54■□□□□ 0.56
CLK3-223ENST00000568488 TMEM117Q9H0C3 514 aa18.54■□□□□ 0.56
CLK3-223ENST00000568488 JPH1Q9HDC5 661 aaPredicted RBP18.54■□□□□ 0.56
CLK3-223ENST00000568488 CYP26B1Q9NR63 512 aa18.54■□□□□ 0.56
CLK3-223ENST00000568488 DIAPH3Q9NSV4 1193 aa18.54■□□□□ 0.56
CLK3-223ENST00000568488 SLC9A2Q9UBY0 812 aa18.54■□□□□ 0.56
CLK3-223ENST00000568488 R4GN57 208 aa18.54■□□□□ 0.56
CLK3-223ENST00000568488 PIK3CDO00329 1044 aa18.53■□□□□ 0.56
CLK3-223ENST00000568488 IFIT3O14879 490 aaKnown RBP18.53■□□□□ 0.56
CLK3-223ENST00000568488 CXCL14O95715 111 aa18.53■□□□□ 0.56
CLK3-223ENST00000568488 EOMESO95936 686 aa18.53■□□□□ 0.56
CLK3-223ENST00000568488 STAT5BP51692 787 aa18.53■□□□□ 0.56
CLK3-223ENST00000568488 KIAA1841Q6NSI8 718 aa18.53■□□□□ 0.56
CLK3-223ENST00000568488 ABI1Q8IZP0 508 aa18.53■□□□□ 0.56
CLK3-223ENST00000568488 SIX5Q8N196 739 aa18.53■□□□□ 0.56
CLK3-223ENST00000568488 ACSF2Q96CM8 615 aaPredicted RBP18.53■□□□□ 0.56
CLK3-223ENST00000568488 CNTNAP3BQ96NU0 1288 aa18.53■□□□□ 0.56
CLK3-223ENST00000568488 CASD1Q96PB1 797 aa18.53■□□□□ 0.56
CLK3-223ENST00000568488 CNTNAP3Q9BZ76 1288 aa18.53■□□□□ 0.56
CLK3-223ENST00000568488 SEMA4AQ9H3S1 761 aa18.53■□□□□ 0.56
CLK3-223ENST00000568488 SENP2Q9HC62 589 aa18.53■□□□□ 0.56
CLK3-223ENST00000568488 USTQ9Y2C2 406 aa18.53■□□□□ 0.56
CLK3-223ENST00000568488 UBIAD1Q9Y5Z9 338 aa18.53■□□□□ 0.56
CLK3-223ENST00000568488 EP300Q09472 2414 aaPredicted RBP18.53■□□□□ 0.56
CLK3-223ENST00000568488 LAMA4Q16363 1823 aa18.53■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms