RNA–Protein interactions for RNA: ENST00000568472.6

CLN3-234, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 1,011 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-234ENST00000568472 TMOD1P28289 359 aa24.57■■□□□ 1.52
CLN3-234ENST00000568472 THPOP40225 353 aa24.57■■□□□ 1.52
CLN3-234ENST00000568472 MAGEA10P43363 369 aaPredicted RBP24.57■■□□□ 1.52
CLN3-234ENST00000568472 FPGSQ05932 587 aa24.57■■□□□ 1.52
CLN3-234ENST00000568472 TBC1D8BQ0IIM8 1120 aa24.57■■□□□ 1.52
CLN3-234ENST00000568472 PPIGQ13427 754 aaKnown RBP eCLIP24.57■■□□□ 1.526e-7■■□□□ 11.8
CLN3-234ENST00000568472 TRAPPC12Q8WVT3 735 aa24.57■■□□□ 1.52
CLN3-234ENST00000568472 WRAP73Q9P2S5 460 aaPredicted RBP24.57■■□□□ 1.52
CLN3-234ENST00000568472 C22orf31O95567 290 aa24.56■■□□□ 1.52
CLN3-234ENST00000568472 IQCF3P0C7M6 154 aa24.56■■□□□ 1.52
CLN3-234ENST00000568472 BMP8BP34820 402 aa24.56■■□□□ 1.52
CLN3-234ENST00000568472 CCT6AP40227 531 aaKnown RBP24.56■■□□□ 1.52
CLN3-234ENST00000568472 LRRC8DQ7L1W4 858 aa24.56■■□□□ 1.52
CLN3-234ENST00000568472 RPUSD2Q8IZ73 545 aaKnown RBP24.56■■□□□ 1.52
CLN3-234ENST00000568472 GDF15Q99988 308 aa24.56■■□□□ 1.52
CLN3-234ENST00000568472 CYP26B1Q9NR63 512 aa24.56■■□□□ 1.52
CLN3-234ENST00000568472 SRPRBQ9Y5M8 271 aaKnown RBP24.56■■□□□ 1.52
CLN3-234ENST00000568472 YEATS4O95619 227 aa24.55■■□□□ 1.52
CLN3-234ENST00000568472 PFKMP08237 780 aa24.55■■□□□ 1.52
CLN3-234ENST00000568472 RFC5P40937 340 aa24.55■■□□□ 1.52
CLN3-234ENST00000568472 MDM2Q00987 491 aaPredicted RBP24.55■■□□□ 1.52
CLN3-234ENST00000568472 CEBPZQ03701 1054 aaKnown RBP24.55■■□□□ 1.52
CLN3-234ENST00000568472 MTERF2Q49AM1 385 aa24.55■■□□□ 1.52
CLN3-234ENST00000568472 IER5Q5VY09 327 aa24.55■■□□□ 1.52
CLN3-234ENST00000568472 RUFY4Q6ZNE9 571 aa24.55■■□□□ 1.52
CLN3-234ENST00000568472 SNX29Q8TEQ0 813 aa24.55■■□□□ 1.52
CLN3-234ENST00000568472 CEP170P1Q96L14 293 aa24.55■■□□□ 1.52
CLN3-234ENST00000568472 WNT8AQ9H1J5 351 aa24.55■■□□□ 1.52
CLN3-234ENST00000568472 ZDHHC9Q9Y397 364 aa24.55■■□□□ 1.52
CLN3-234ENST00000568472 RSPH10B2B2RC85 870 aa24.54■■□□□ 1.52
CLN3-234ENST00000568472 GAS2O43903 313 aaKnown RBP24.54■■□□□ 1.52
CLN3-234ENST00000568472 MED24O75448 989 aa24.54■■□□□ 1.52
CLN3-234ENST00000568472 RSPH10BP0C881 870 aa24.54■■□□□ 1.52
CLN3-234ENST00000568472 DDIT3P35638 169 aa24.54■■□□□ 1.52
CLN3-234ENST00000568472 DNM2P50570 870 aa24.54■■□□□ 1.52
CLN3-234ENST00000568472 CCL23P55773 120 aa24.54■■□□□ 1.52
CLN3-234ENST00000568472 STK38Q15208 465 aa24.54■■□□□ 1.52
CLN3-234ENST00000568472 FAM26DQ5JW98 314 aa24.54■■□□□ 1.52
CLN3-234ENST00000568472 ZNF618Q5T7W0 954 aa24.54■■□□□ 1.52
CLN3-234ENST00000568472 LINC00301Q8NCQ3 95 aa24.54■■□□□ 1.52
CLN3-234ENST00000568472 DNAJB3Q8WWF6 145 aa24.54■■□□□ 1.52
CLN3-234ENST00000568472 SLC7A3Q8WY07 619 aa24.54■■□□□ 1.52
CLN3-234ENST00000568472 WNT8BQ93098 351 aa24.54■■□□□ 1.52
CLN3-234ENST00000568472 CCDC43Q96MW1 224 aaKnown RBP24.54■■□□□ 1.52
CLN3-234ENST00000568472 FTOQ9C0B1 505 aaKnown RBP eCLIP24.54■■□□□ 1.52
CLN3-234ENST00000568472 TFIP11Q9UBB9 837 aaKnown RBP24.54■■□□□ 1.52
CLN3-234ENST00000568472 DBR1Q9UK59 544 aaKnown RBP24.54■■□□□ 1.52
CLN3-234ENST00000568472 UMODL1Q5DID0 1318 aa24.54■■□□□ 1.52
CLN3-234ENST00000568472 KDM3AQ9Y4C1 1321 aa24.54■■□□□ 1.52
CLN3-234ENST00000568472 PDE4DIPQ5VU43 2346 aa24.53■■□□□ 1.52
CLN3-234ENST00000568472 M0QZ92 97 aa24.53■■□□□ 1.52
CLN3-234ENST00000568472 MAFO75444 373 aaPredicted RBP24.53■■□□□ 1.52
CLN3-234ENST00000568472 UBA7P41226 1012 aa24.53■■□□□ 1.52
CLN3-234ENST00000568472 CDC42EP1Q00587 391 aa24.53■■□□□ 1.52
CLN3-234ENST00000568472 XKR9Q5GH70 373 aa24.53■■□□□ 1.52
CLN3-234ENST00000568472 EFCAB12Q6NXP0 572 aa24.53■■□□□ 1.52
CLN3-234ENST00000568472 KIAA0319LQ8IZA0 1049 aa24.53■■□□□ 1.52
CLN3-234ENST00000568472 METTL13Q8N6R0 699 aa24.53■■□□□ 1.52
CLN3-234ENST00000568472 CEP89Q96ST8 783 aa24.53■■□□□ 1.52
CLN3-234ENST00000568472 NT5C3AQ9H0P0 336 aa24.53■■□□□ 1.52
CLN3-234ENST00000568472 MYH9P35579 1960 aaKnown RBP24.53■■□□□ 1.52
CLN3-234ENST00000568472 IGKV6-21A0A0C4DH24 114 aa24.52■■□□□ 1.52
CLN3-234ENST00000568472 PPP6R2O75170 966 aa24.52■■□□□ 1.52
CLN3-234ENST00000568472 CSF2RAP15509 400 aa24.52■■□□□ 1.52
CLN3-234ENST00000568472 HYIQ5T013 277 aa24.52■■□□□ 1.52
CLN3-234ENST00000568472 PLA2G4FQ68DD2 849 aa24.52■■□□□ 1.52
CLN3-234ENST00000568472 KRI1Q8N9T8 703 aaKnown RBP24.52■■□□□ 1.52
CLN3-234ENST00000568472 KCNG4Q8TDN1 519 aa24.52■■□□□ 1.52
CLN3-234ENST00000568472 MAP7D2Q96T17 732 aa24.52■■□□□ 1.52
CLN3-234ENST00000568472 UBE2OQ9C0C9 1292 aaKnown RBP24.52■■□□□ 1.52
CLN3-234ENST00000568472 FAM49AQ9H0Q0 323 aaPredicted RBP24.52■■□□□ 1.52
CLN3-234ENST00000568472 IL23AQ9NPF7 189 aa24.52■■□□□ 1.52
CLN3-234ENST00000568472 FBXO2Q9UK22 296 aaPredicted RBP24.52■■□□□ 1.52
CLN3-234ENST00000568472 CIZ1Q9ULV3 898 aaPredicted RBP24.52■■□□□ 1.52
CLN3-234ENST00000568472 SPTLC2O15270 562 aa24.51■■□□□ 1.51
CLN3-234ENST00000568472 MARCKSP29966 332 aaPredicted RBP24.51■■□□□ 1.51
CLN3-234ENST00000568472 POLGP54098 1239 aaPredicted RBP24.51■■□□□ 1.51
CLN3-234ENST00000568472 NPEPPSP55786 919 aa24.51■■□□□ 1.51
CLN3-234ENST00000568472 MRPS6P82932 125 aaKnown RBP24.51■■□□□ 1.51
CLN3-234ENST00000568472 TRAF7Q6Q0C0 670 aa24.51■■□□□ 1.51
CLN3-234ENST00000568472 FAM43BQ6ZT52 329 aaPredicted RBP24.51■■□□□ 1.51
CLN3-234ENST00000568472 LINC01465Q8N7H1 131 aa24.51■■□□□ 1.51
CLN3-234ENST00000568472 DHX33Q9H6R0 707 aaKnown RBP24.51■■□□□ 1.51
CLN3-234ENST00000568472 KIAA1024Q9UPX6 916 aa24.51■■□□□ 1.51
CLN3-234ENST00000568472 DNM3Q9UQ16 869 aa24.51■■□□□ 1.51
CLN3-234ENST00000568472 TMEM150BA6NC51 233 aa24.5■■□□□ 1.51
CLN3-234ENST00000568472 PP2D1A8MPX8 630 aa24.5■■□□□ 1.51
CLN3-234ENST00000568472 DGAT1O75907 488 aa24.5■■□□□ 1.51
CLN3-234ENST00000568472 RARRES1P49788 294 aa24.5■■□□□ 1.51
CLN3-234ENST00000568472 PSRC1Q6PGN9 363 aaPredicted RBP24.5■■□□□ 1.51
CLN3-234ENST00000568472 POTEGQ6S5H5 508 aa24.5■■□□□ 1.51
CLN3-234ENST00000568472 PIGOQ8TEQ8 1089 aa24.5■■□□□ 1.51
CLN3-234ENST00000568472 ZBTB10Q96DT7 871 aa24.5■■□□□ 1.51
CLN3-234ENST00000568472 CALML4Q96GE6 196 aa24.5■■□□□ 1.51
CLN3-234ENST00000568472 SCLYQ96I15 445 aa24.5■■□□□ 1.51
CLN3-234ENST00000568472 CDK5RAP3Q96JB5 506 aa24.5■■□□□ 1.51
CLN3-234ENST00000568472 MMTAG2Q9BU76 263 aaKnown RBP24.5■■□□□ 1.51
CLN3-234ENST00000568472 SUGCTQ9HAC7 445 aa24.5■■□□□ 1.51
CLN3-234ENST00000568472 SQORQ9Y6N5 450 aa24.5■■□□□ 1.51
CLN3-234ENST00000568472 KAT6AQ92794 2004 aa24.5■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms