RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 LRFN3Q9BTN0 628 aa19.13■□□□□ 0.65
CLN3-231ENST00000568422 CLDND1Q9NY35 253 aa19.13■□□□□ 0.65
CLN3-231ENST00000568422 PRKAG3Q9UGI9 489 aa19.13■□□□□ 0.65
CLN3-231ENST00000568422 TCEAL9Q9UHQ7 104 aa19.13■□□□□ 0.65
CLN3-231ENST00000568422 LRFN2Q9ULH4 789 aa19.13■□□□□ 0.65
CLN3-231ENST00000568422 PSMA5P28066 241 aa19.12■□□□□ 0.65
CLN3-231ENST00000568422 SSTR3P32745 418 aaPredicted RBP19.12■□□□□ 0.65
CLN3-231ENST00000568422 PKN1Q16512 942 aa19.12■□□□□ 0.65
CLN3-231ENST00000568422 SWSAP1Q6NVH7 229 aa19.12■□□□□ 0.65
CLN3-231ENST00000568422 EP400NLQ6ZTU2 488 aa19.12■□□□□ 0.65
CLN3-231ENST00000568422 CCDC148Q8NFR7 591 aa19.12■□□□□ 0.65
CLN3-231ENST00000568422 BBXQ8WY36 941 aaPredicted RBP19.12■□□□□ 0.65
CLN3-231ENST00000568422 KHSRPQ92945 711 aaKnown RBP eCLIP19.12■□□□□ 0.65
CLN3-231ENST00000568422 PPP2R3CQ969Q6 453 aa19.12■□□□□ 0.65
CLN3-231ENST00000568422 AGXT2Q9BYV1 514 aa19.12■□□□□ 0.65
CLN3-231ENST00000568422 RAPGEFL1Q9UHV5 662 aa19.12■□□□□ 0.65
CLN3-231ENST00000568422 PLAGL2Q9UPG8 496 aa19.12■□□□□ 0.65
CLN3-231ENST00000568422 CEP131Q9UPN4 1083 aa19.12■□□□□ 0.65
CLN3-231ENST00000568422 MAFBQ9Y5Q3 323 aaPredicted RBP19.12■□□□□ 0.65
CLN3-231ENST00000568422 SNX14Q9Y5W7 946 aa19.12■□□□□ 0.65
CLN3-231ENST00000568422 MRPL42Q9Y6G3 142 aaKnown RBP19.12■□□□□ 0.65
CLN3-231ENST00000568422 MYO7AQ13402 2215 aa19.12■□□□□ 0.65
CLN3-231ENST00000568422 RPS6KA5O75582 802 aa19.11■□□□□ 0.65
CLN3-231ENST00000568422 REC8O95072 547 aa19.11■□□□□ 0.65
CLN3-231ENST00000568422 PSAPP07602 524 aa19.11■□□□□ 0.65
CLN3-231ENST00000568422 CPA1P15085 419 aa19.11■□□□□ 0.65
CLN3-231ENST00000568422 RPS6KB1P23443 525 aa19.11■□□□□ 0.65
CLN3-231ENST00000568422 CIITAP33076 1130 aa19.11■□□□□ 0.65
CLN3-231ENST00000568422 SARSP49591 514 aaKnown RBP19.11■□□□□ 0.65
CLN3-231ENST00000568422 NFX1Q12986 1120 aaKnown RBP19.11■□□□□ 0.65
CLN3-231ENST00000568422 CKAP2LQ8IYA6 745 aa19.11■□□□□ 0.65
CLN3-231ENST00000568422 RNF26Q9BY78 433 aaPredicted RBP19.11■□□□□ 0.65
CLN3-231ENST00000568422 TMX1Q9H3N1 280 aa19.11■□□□□ 0.65
CLN3-231ENST00000568422 ERVK-5Q9HDB9 667 aa19.11■□□□□ 0.65
CLN3-231ENST00000568422 C1orf112Q9NSG2 853 aa19.11■□□□□ 0.65
CLN3-231ENST00000568422 HCN4Q9Y3Q4 1203 aa19.11■□□□□ 0.65
CLN3-231ENST00000568422 PCDHA10Q9Y5I2 948 aa19.11■□□□□ 0.65
CLN3-231ENST00000568422 FNDC1Q4ZHG4 1894 aaPredicted RBP19.11■□□□□ 0.65
CLN3-231ENST00000568422 ZBTB42B2RXF5 422 aa19.1■□□□□ 0.65
CLN3-231ENST00000568422 GPR182O15218 404 aa19.1■□□□□ 0.65
CLN3-231ENST00000568422 ALADP13716 330 aa19.1■□□□□ 0.65
CLN3-231ENST00000568422 LTBRP36941 435 aa19.1■□□□□ 0.65
CLN3-231ENST00000568422 CRYBB1P53674 252 aaPredicted RBP19.1■□□□□ 0.65
CLN3-231ENST00000568422 HYAL1Q12794 435 aa19.1■□□□□ 0.65
CLN3-231ENST00000568422 TMEM266Q2M3C6 531 aa19.1■□□□□ 0.65
CLN3-231ENST00000568422 ZNF710Q8N1W2 664 aa19.1■□□□□ 0.65
CLN3-231ENST00000568422 ALG13Q9NP73 1137 aaKnown RBP19.1■□□□□ 0.65
CLN3-231ENST00000568422 GINS2Q9Y248 185 aa19.1■□□□□ 0.65
CLN3-231ENST00000568422 PCDHB7Q9Y5E2 793 aa19.1■□□□□ 0.65
CLN3-231ENST00000568422 DENND3A2RUS2 1198 aa19.09■□□□□ 0.65
CLN3-231ENST00000568422 C22orf31O95567 290 aa19.09■□□□□ 0.65
CLN3-231ENST00000568422 ATP4AP20648 1035 aa19.09■□□□□ 0.65
CLN3-231ENST00000568422 PLA2G5P39877 138 aa19.09■□□□□ 0.65
CLN3-231ENST00000568422 EVCP57679 992 aa19.09■□□□□ 0.65
CLN3-231ENST00000568422 NTRK3Q16288 839 aa19.09■□□□□ 0.65
CLN3-231ENST00000568422 PRR16Q569H4 304 aa19.09■□□□□ 0.65
CLN3-231ENST00000568422 SLC24A5Q71RS6 500 aa19.09■□□□□ 0.65
CLN3-231ENST00000568422 PHKBQ93100 1093 aa19.09■□□□□ 0.65
CLN3-231ENST00000568422 FAM122AQ96E09 287 aa19.09■□□□□ 0.65
CLN3-231ENST00000568422 FAM167AQ96KS9 214 aa19.09■□□□□ 0.65
CLN3-231ENST00000568422 SH3GLB2Q9NR46 395 aa19.09■□□□□ 0.65
CLN3-231ENST00000568422 RGS18Q9NS28 235 aa19.09■□□□□ 0.65
CLN3-231ENST00000568422 NOC2LQ9Y3T9 749 aaKnown RBP19.09■□□□□ 0.65
CLN3-231ENST00000568422 MAGEB2O15479 319 aa19.08■□□□□ 0.64
CLN3-231ENST00000568422 EPB41L2O43491 1005 aaKnown RBP19.08■□□□□ 0.64
CLN3-231ENST00000568422 IFNAR1P17181 557 aa19.08■□□□□ 0.64
CLN3-231ENST00000568422 USP11P51784 963 aa19.08■□□□□ 0.64
CLN3-231ENST00000568422 PAN2Q504Q3 1202 aaKnown RBP19.08■□□□□ 0.64
CLN3-231ENST00000568422 ADHFE1Q8IWW8 467 aa19.08■□□□□ 0.64
CLN3-231ENST00000568422 SPPL3Q8TCT6 385 aa19.08■□□□□ 0.64
CLN3-231ENST00000568422 CDHR5Q9HBB8 845 aa19.08■□□□□ 0.64
CLN3-231ENST00000568422 C11orf16Q9NQ32 467 aa19.08■□□□□ 0.64
CLN3-231ENST00000568422 AAASQ9NRG9 546 aa19.08■□□□□ 0.64
CLN3-231ENST00000568422 ST3GAL5Q9UNP4 418 aa19.08■□□□□ 0.64
CLN3-231ENST00000568422 PLXNA4Q9HCM2 1894 aa19.07■□□□□ 0.64
CLN3-231ENST00000568422 WDR64B1ANS9 1081 aa19.07■□□□□ 0.64
CLN3-231ENST00000568422 ADAMTS3O15072 1205 aa19.07■□□□□ 0.64
CLN3-231ENST00000568422 ITGB1P05556 798 aa19.07■□□□□ 0.64
CLN3-231ENST00000568422 TMOD1P28289 359 aa19.07■□□□□ 0.64
CLN3-231ENST00000568422 ZP2Q05996 745 aa19.07■□□□□ 0.64
CLN3-231ENST00000568422 CAMK1Q14012 370 aa19.07■□□□□ 0.64
CLN3-231ENST00000568422 SMAD2Q15796 467 aaKnown RBP19.07■□□□□ 0.64
CLN3-231ENST00000568422 METTL13Q8N6R0 699 aa19.07■□□□□ 0.64
CLN3-231ENST00000568422 KLHL23Q8NBE8 558 aa19.07■□□□□ 0.64
CLN3-231ENST00000568422 TMEM40Q8WWA1 233 aa19.07■□□□□ 0.64
CLN3-231ENST00000568422 POP1Q99575 1024 aaKnown RBP19.07■□□□□ 0.64
CLN3-231ENST00000568422 ADAM2Q99965 735 aa19.07■□□□□ 0.64
CLN3-231ENST00000568422 SLC26A6Q9BXS9 759 aa19.07■□□□□ 0.64
CLN3-231ENST00000568422 UPF3BQ9BZI7 483 aaKnown RBP19.07■□□□□ 0.64
CLN3-231ENST00000568422 GABBR1Q9UBS5 961 aa19.07■□□□□ 0.64
CLN3-231ENST00000568422 SAMM50Q9Y512 469 aa19.07■□□□□ 0.64
CLN3-231ENST00000568422 PCDHB12Q9Y5F1 795 aa19.07■□□□□ 0.64
CLN3-231ENST00000568422 C19orf67A6NJJ6 358 aa19.06■□□□□ 0.64
CLN3-231ENST00000568422 C9IYK1 514 aa19.06■□□□□ 0.64
CLN3-231ENST00000568422 MGEA5O60502 916 aa19.06■□□□□ 0.64
CLN3-231ENST00000568422 GPR32O75388 356 aa19.06■□□□□ 0.64
CLN3-231ENST00000568422 PDIA3P30101 505 aaKnown RBP19.06■□□□□ 0.64
CLN3-231ENST00000568422 SFNP31947 248 aa19.06■□□□□ 0.64
CLN3-231ENST00000568422 UBE3AQ05086 875 aa19.06■□□□□ 0.64
CLN3-231ENST00000568422 ADAM15Q13444 863 aa19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms