RNA–Protein interactions for RNA: ENST00000567674.1

CDH3-206, Transcript of cadherin 3, humanhuman

TSL 3

Gene CDH3, Length 892 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-206ENST00000567674 ADGRE1Q14246 886 aa12.63□□□□□ -0.39
CDH3-206ENST00000567674 LRCH2Q5VUJ6 765 aa12.63□□□□□ -0.39
CDH3-206ENST00000567674 RUFY4Q6ZNE9 571 aa12.63□□□□□ -0.39
CDH3-206ENST00000567674 NEK8Q86SG6 692 aa12.63□□□□□ -0.39
CDH3-206ENST00000567674 SLFN12Q8IYM2 578 aa12.63□□□□□ -0.39
CDH3-206ENST00000567674 KIAA0319LQ8IZA0 1049 aa12.63□□□□□ -0.39
CDH3-206ENST00000567674 GTF3C6Q969F1 213 aa12.63□□□□□ -0.39
CDH3-206ENST00000567674 ZSCAN31Q96LW9 406 aaPredicted RBP12.63□□□□□ -0.39
CDH3-206ENST00000567674 PLVAPQ9BX97 442 aa12.63□□□□□ -0.39
CDH3-206ENST00000567674 NIFKQ9BYG3 293 aaKnown RBP12.63□□□□□ -0.39
CDH3-206ENST00000567674 C1orf112Q9NSG2 853 aa12.63□□□□□ -0.39
CDH3-206ENST00000567674 PKD2L1Q9P0L9 805 aa12.63□□□□□ -0.39
CDH3-206ENST00000567674 MTCH2Q9Y6C9 303 aa12.63□□□□□ -0.39
CDH3-206ENST00000567674 CDY2AQ9Y6F7 541 aa12.63□□□□□ -0.39
CDH3-206ENST00000567674 CCDC194A0A1B0GVG4 234 aa12.62□□□□□ -0.39
CDH3-206ENST00000567674 LINC01553A4QN01 128 aa12.62□□□□□ -0.39
CDH3-206ENST00000567674 CARNS1A5YM72 827 aa12.62□□□□□ -0.39
CDH3-206ENST00000567674 NCK2O43639 380 aa12.62□□□□□ -0.39
CDH3-206ENST00000567674 MYOGP15173 224 aa12.62□□□□□ -0.39
CDH3-206ENST00000567674 ATP4AP20648 1035 aa12.62□□□□□ -0.39
CDH3-206ENST00000567674 NEK4P51957 841 aa12.62□□□□□ -0.39
CDH3-206ENST00000567674 PPP2R5CQ13362 524 aa12.62□□□□□ -0.39
CDH3-206ENST00000567674 PTPROQ16827 1216 aa12.62□□□□□ -0.39
CDH3-206ENST00000567674 XKR3Q5GH77 459 aa12.62□□□□□ -0.39
CDH3-206ENST00000567674 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.62□□□□□ -0.39
CDH3-206ENST00000567674 MYOCDQ8IZQ8 938 aa12.62□□□□□ -0.39
CDH3-206ENST00000567674 CRIPAKQ8N1N5 446 aa12.62□□□□□ -0.39
CDH3-206ENST00000567674 ETNPPLQ8TBG4 499 aa12.62□□□□□ -0.39
CDH3-206ENST00000567674 CLP1Q92989 425 aaKnown RBP12.62□□□□□ -0.39
CDH3-206ENST00000567674 ZNF689Q96CS4 500 aaPredicted RBP12.62□□□□□ -0.39
CDH3-206ENST00000567674 YME1L1Q96TA2 773 aa12.62□□□□□ -0.39
CDH3-206ENST00000567674 LMAN2LQ9H0V9 348 aa12.62□□□□□ -0.39
CDH3-206ENST00000567674 KCNMB3Q9NPA1 279 aa12.62□□□□□ -0.39
CDH3-206ENST00000567674 ORC3Q9UBD5 711 aaPredicted RBP12.62□□□□□ -0.39
CDH3-206ENST00000567674 DDX25Q9UHL0 483 aaKnown RBP12.62□□□□□ -0.39
CDH3-206ENST00000567674 LIMCH1Q9UPQ0 1083 aa12.62□□□□□ -0.39
CDH3-206ENST00000567674 SAMM50Q9Y512 469 aa12.62□□□□□ -0.39
CDH3-206ENST00000567674 DOCK5Q9H7D0 1870 aa12.61□□□□□ -0.39
CDH3-206ENST00000567674 ZBTB42B2RXF5 422 aa12.61□□□□□ -0.39
CDH3-206ENST00000567674 GAS2O43903 313 aaKnown RBP12.61□□□□□ -0.39
CDH3-206ENST00000567674 BAG4O95429 457 aaKnown RBP12.61□□□□□ -0.39
CDH3-206ENST00000567674 C22orf31O95567 290 aa12.61□□□□□ -0.39
CDH3-206ENST00000567674 OATP04181 439 aa12.61□□□□□ -0.39
CDH3-206ENST00000567674 CTSHP09668 335 aa12.61□□□□□ -0.39
CDH3-206ENST00000567674 MRE11P49959 708 aa12.61□□□□□ -0.39
CDH3-206ENST00000567674 PAK2Q13177 524 aa12.61□□□□□ -0.39
CDH3-206ENST00000567674 STK3Q13188 491 aa12.61□□□□□ -0.39
CDH3-206ENST00000567674 ORC2Q13416 577 aaPredicted RBP12.61□□□□□ -0.39
CDH3-206ENST00000567674 NPAS4Q8IUM7 802 aa12.61□□□□□ -0.39
CDH3-206ENST00000567674 CKAP2LQ8IYA6 745 aa12.61□□□□□ -0.39
CDH3-206ENST00000567674 ELAC1Q9H777 363 aaKnown RBP12.61□□□□□ -0.39
CDH3-206ENST00000567674 SH2B1Q9NRF2 756 aaPredicted RBP12.61□□□□□ -0.39
CDH3-206ENST00000567674 GABBR1Q9UBS5 961 aa12.61□□□□□ -0.39
CDH3-206ENST00000567674 PADI3Q9ULW8 664 aa12.61□□□□□ -0.39
CDH3-206ENST00000567674 MICAL3Q7RTP6 2002 aa12.61□□□□□ -0.39
CDH3-206ENST00000567674 GBF1Q92538 1859 aa12.6□□□□□ -0.39
CDH3-206ENST00000567674 H3BNC9 293 aa12.6□□□□□ -0.39
CDH3-206ENST00000567674 DGKIO75912 1065 aa12.6□□□□□ -0.39
CDH3-206ENST00000567674 P4HBP07237 508 aaKnown RBP12.6□□□□□ -0.39
CDH3-206ENST00000567674 GHRP10912 638 aa12.6□□□□□ -0.39
CDH3-206ENST00000567674 KRT2P35908 639 aa12.6□□□□□ -0.39
CDH3-206ENST00000567674 DNM2P50570 870 aa12.6□□□□□ -0.39
CDH3-206ENST00000567674 PSMC5P62195 406 aa12.6□□□□□ -0.39
CDH3-206ENST00000567674 IGBP1P78318 339 aa12.6□□□□□ -0.39
CDH3-206ENST00000567674 TFF2Q03403 129 aa12.6□□□□□ -0.39
CDH3-206ENST00000567674 TRIM29Q14134 588 aa12.6□□□□□ -0.39
CDH3-206ENST00000567674 TARBP2Q15633 366 aaKnown RBP12.6□□□□□ -0.39
CDH3-206ENST00000567674 ME3Q16798 604 aa12.6□□□□□ -0.39
CDH3-206ENST00000567674 TCTN1Q2MV58 587 aa12.6□□□□□ -0.39
CDH3-206ENST00000567674 CMTR2Q8IYT2 770 aaKnown RBP12.6□□□□□ -0.39
CDH3-206ENST00000567674 FIBCD1Q8N539 461 aa12.6□□□□□ -0.39
CDH3-206ENST00000567674 LINC01465Q8N7H1 131 aa12.6□□□□□ -0.39
CDH3-206ENST00000567674 RASGRP4Q8TDF6 673 aa12.6□□□□□ -0.39
CDH3-206ENST00000567674 ARNTL2Q8WYA1 636 aa12.6□□□□□ -0.39
CDH3-206ENST00000567674 P2RX5Q93086 422 aa12.6□□□□□ -0.39
CDH3-206ENST00000567674 MAP7D2Q96T17 732 aa12.6□□□□□ -0.39
CDH3-206ENST00000567674 INO80BQ9C086 356 aaPredicted RBP12.6□□□□□ -0.39
CDH3-206ENST00000567674 SUGCTQ9HAC7 445 aa12.6□□□□□ -0.39
CDH3-206ENST00000567674 RC3H2Q9HBD1 1191 aaKnown RBP12.6□□□□□ -0.39
CDH3-206ENST00000567674 NCOR1O75376 2440 aa12.6□□□□□ -0.39
CDH3-206ENST00000567674 IGKV6-21A0A0C4DH24 114 aa12.59□□□□□ -0.39
CDH3-206ENST00000567674 DDX39AO00148 427 aaKnown RBP12.59□□□□□ -0.39
CDH3-206ENST00000567674 LPXNO60711 386 aa12.59□□□□□ -0.39
CDH3-206ENST00000567674 GPR32O75388 356 aa12.59□□□□□ -0.39
CDH3-206ENST00000567674 RPS6KA5O75582 802 aa12.59□□□□□ -0.39
CDH3-206ENST00000567674 CTDNEP1O95476 244 aa12.59□□□□□ -0.39
CDH3-206ENST00000567674 QARSP47897 775 aaKnown RBP12.59□□□□□ -0.39
CDH3-206ENST00000567674 RBM25P49756 843 aaKnown RBP12.59□□□□□ -0.39
CDH3-206ENST00000567674 KCNQ1P51787 676 aa12.59□□□□□ -0.39
CDH3-206ENST00000567674 FAM189BP81408 668 aa12.59□□□□□ -0.39
CDH3-206ENST00000567674 HMGN5P82970 282 aaKnown RBP12.59□□□□□ -0.39
CDH3-206ENST00000567674 GRB10Q13322 594 aa12.59□□□□□ -0.39
CDH3-206ENST00000567674 PCBP1Q15365 356 aaKnown RBP eCLIP12.59□□□□□ -0.39
CDH3-206ENST00000567674 CSPP1Q1MSJ5 1256 aa12.59□□□□□ -0.39
CDH3-206ENST00000567674 SLC24A5Q71RS6 500 aa12.59□□□□□ -0.39
CDH3-206ENST00000567674 MIER3Q7Z3K6 550 aa12.59□□□□□ -0.39
CDH3-206ENST00000567674 NSUN7Q8NE18 718 aaKnown RBP12.59□□□□□ -0.39
CDH3-206ENST00000567674 FBXO22Q8NEZ5 403 aa12.59□□□□□ -0.39
CDH3-206ENST00000567674 NEK9Q8TD19 979 aa12.59□□□□□ -0.39
CDH3-206ENST00000567674 MRPL38Q96DV4 380 aaKnown RBP12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms