RNA–Protein interactions for RNA: ENST00000566057.5

CLN3-221, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-221ENST00000566057 VCANP13611 3396 aa20.76■□□□□ 0.91
CLN3-221ENST00000566057 COL4A4P53420 1690 aaPredicted RBP20.76■□□□□ 0.91
CLN3-221ENST00000566057 NLRC5Q86WI3 1866 aa20.75■□□□□ 0.91
CLN3-221ENST00000566057 UPP2O95045 317 aa20.75■□□□□ 0.91
CLN3-221ENST00000566057 RPLP2P05387 115 aaKnown RBP20.75■□□□□ 0.91
CLN3-221ENST00000566057 CD52P31358 61 aa20.75■□□□□ 0.91
CLN3-221ENST00000566057 HTRA4P83105 476 aaPredicted RBP20.75■□□□□ 0.91
CLN3-221ENST00000566057 NR5A1Q13285 461 aa20.75■□□□□ 0.91
CLN3-221ENST00000566057 TSHZ1Q6ZSZ6 1077 aa20.75■□□□□ 0.91
CLN3-221ENST00000566057 NEK8Q86SG6 692 aa20.75■□□□□ 0.91
CLN3-221ENST00000566057 NME8Q8N427 588 aa20.75■□□□□ 0.91
CLN3-221ENST00000566057 CDHR5Q9HBB8 845 aa20.75■□□□□ 0.91
CLN3-221ENST00000566057 INSL6Q9Y581 213 aa20.75■□□□□ 0.91
CLN3-221ENST00000566057 LINC01553A4QN01 128 aa20.74■□□□□ 0.91
CLN3-221ENST00000566057 ENPP3O14638 875 aa20.74■□□□□ 0.91
CLN3-221ENST00000566057 C22orf31O95567 290 aa20.74■□□□□ 0.91
CLN3-221ENST00000566057 SFNP31947 248 aa20.74■□□□□ 0.91
CLN3-221ENST00000566057 JAK3P52333 1124 aa20.74■□□□□ 0.91
CLN3-221ENST00000566057 FOSBP53539 338 aa20.74■□□□□ 0.91
CLN3-221ENST00000566057 CCDC85BQ15834 202 aaPredicted RBP20.74■□□□□ 0.91
CLN3-221ENST00000566057 TNFRSF25Q93038 417 aa20.74■□□□□ 0.91
CLN3-221ENST00000566057 SPTBN5Q9NRC6 3674 aaKnown RBP20.74■□□□□ 0.91
CLN3-221ENST00000566057 KRT2P35908 639 aa20.73■□□□□ 0.91
CLN3-221ENST00000566057 PRKCEQ02156 737 aa20.73■□□□□ 0.91
CLN3-221ENST00000566057 KRT40Q6A162 431 aa20.73■□□□□ 0.91
CLN3-221ENST00000566057 PPP4R3AQ6IN85 833 aa20.73■□□□□ 0.91
CLN3-221ENST00000566057 MIER3Q7Z3K6 550 aa20.73■□□□□ 0.91
CLN3-221ENST00000566057 RTN4RL1Q86UN2 441 aaPredicted RBP20.73■□□□□ 0.91
CLN3-221ENST00000566057 KCNMB3Q9NPA1 279 aa20.73■□□□□ 0.91
CLN3-221ENST00000566057 SQORQ9Y6N5 450 aa20.73■□□□□ 0.91
CLN3-221ENST00000566057 KDM3AQ9Y4C1 1321 aa20.73■□□□□ 0.91
CLN3-221ENST00000566057 M0QZ92 97 aa20.72■□□□□ 0.91
CLN3-221ENST00000566057 CCNT1O60563 726 aaKnown RBP20.72■□□□□ 0.91
CLN3-221ENST00000566057 OATP04181 439 aa20.72■□□□□ 0.91
CLN3-221ENST00000566057 CCDC83Q8IWF9 413 aa20.72■□□□□ 0.91
CLN3-221ENST00000566057 METTL13Q8N6R0 699 aa20.72■□□□□ 0.91
CLN3-221ENST00000566057 RDM1Q8NG50 284 aa20.72■□□□□ 0.91
CLN3-221ENST00000566057 SP7Q8TDD2 431 aaPredicted RBP20.72■□□□□ 0.91
CLN3-221ENST00000566057 LINC01599Q8WXQ3 324 aa20.72■□□□□ 0.91
CLN3-221ENST00000566057 HAS1Q92839 578 aa20.72■□□□□ 0.91
CLN3-221ENST00000566057 FAM167AQ96KS9 214 aa20.72■□□□□ 0.91
CLN3-221ENST00000566057 PRDM6Q9NQX0 595 aa20.72■□□□□ 0.91
CLN3-221ENST00000566057 NRBP2Q9NSY0 501 aa20.72■□□□□ 0.91
CLN3-221ENST00000566057 MTUS1Q9ULD2 1270 aa20.72■□□□□ 0.91
CLN3-221ENST00000566057 PADI3Q9ULW8 664 aa20.72■□□□□ 0.91
CLN3-221ENST00000566057 BTBD18B2RXH4 712 aa20.71■□□□□ 0.91
CLN3-221ENST00000566057 EML1O00423 815 aa20.71■□□□□ 0.91
CLN3-221ENST00000566057 LPXNO60711 386 aa20.71■□□□□ 0.91
CLN3-221ENST00000566057 STBD1O95210 358 aa20.71■□□□□ 0.91
CLN3-221ENST00000566057 MMP1P03956 469 aa20.71■□□□□ 0.91
CLN3-221ENST00000566057 GCFC2P16383 781 aaKnown RBP20.71■□□□□ 0.91
CLN3-221ENST00000566057 POU3F3P20264 500 aaPredicted RBP20.71■□□□□ 0.91
CLN3-221ENST00000566057 RBM25P49756 843 aaKnown RBP20.71■□□□□ 0.91
CLN3-221ENST00000566057 ERVK-21P61565 698 aa20.71■□□□□ 0.91
CLN3-221ENST00000566057 TMEM266Q2M3C6 531 aa20.71■□□□□ 0.91
CLN3-221ENST00000566057 TMEM40Q8WWA1 233 aa20.71■□□□□ 0.91
CLN3-221ENST00000566057 FAM20AQ96MK3 541 aa20.71■□□□□ 0.91
CLN3-221ENST00000566057 TGS1Q96RS0 853 aaKnown RBP20.71■□□□□ 0.91
CLN3-221ENST00000566057 PPP1R16BQ96T49 567 aa20.71■□□□□ 0.91
CLN3-221ENST00000566057 VAV3Q9UKW4 847 aa20.71■□□□□ 0.91
CLN3-221ENST00000566057 CEP131Q9UPN4 1083 aa20.71■□□□□ 0.91
CLN3-221ENST00000566057 GINS2Q9Y248 185 aa20.71■□□□□ 0.91
CLN3-221ENST00000566057 MTCH2Q9Y6C9 303 aa20.71■□□□□ 0.91
CLN3-221ENST00000566057 VTNP04004 478 aa20.7■□□□□ 0.9
CLN3-221ENST00000566057 GRB10Q13322 594 aa20.7■□□□□ 0.9
CLN3-221ENST00000566057 EFCAB12Q6NXP0 572 aa20.7■□□□□ 0.9
CLN3-221ENST00000566057 POTEDQ86YR6 584 aa20.7■□□□□ 0.9
CLN3-221ENST00000566057 LINC01465Q8N7H1 131 aa20.7■□□□□ 0.9
CLN3-221ENST00000566057 YME1L1Q96TA2 773 aa20.7■□□□□ 0.9
CLN3-221ENST00000566057 C17orf80Q9BSJ5 609 aa20.7■□□□□ 0.9
CLN3-221ENST00000566057 SUGCTQ9HAC7 445 aa20.7■□□□□ 0.9
CLN3-221ENST00000566057 BRMS1Q9HCU9 246 aa20.7■□□□□ 0.9
CLN3-221ENST00000566057 NOC2LQ9Y3T9 749 aaKnown RBP20.7■□□□□ 0.9
CLN3-221ENST00000566057 RALGAPA2Q2PPJ7 1873 aa20.7■□□□□ 0.9
CLN3-221ENST00000566057 BRWD1Q9NSI6 2320 aa20.7■□□□□ 0.9
CLN3-221ENST00000566057 TMEM150BA6NC51 233 aa20.69■□□□□ 0.9
CLN3-221ENST00000566057 MAGEB2O15479 319 aa20.69■□□□□ 0.9
CLN3-221ENST00000566057 GPR32O75388 356 aa20.69■□□□□ 0.9
CLN3-221ENST00000566057 CLCN3P51790 818 aa20.69■□□□□ 0.9
CLN3-221ENST00000566057 PAK2Q13177 524 aa20.69■□□□□ 0.9
CLN3-221ENST00000566057 PPP2R5CQ13362 524 aa20.69■□□□□ 0.9
CLN3-221ENST00000566057 TARBP2Q15633 366 aaKnown RBP20.69■□□□□ 0.9
CLN3-221ENST00000566057 KIZQ2M2Z5 673 aa20.69■□□□□ 0.9
CLN3-221ENST00000566057 DIS3L2Q8IYB7 885 aaKnown RBP20.69■□□□□ 0.9
CLN3-221ENST00000566057 MICALL1Q8N3F8 863 aa20.69■□□□□ 0.9
CLN3-221ENST00000566057 LRRC71Q8N4P6 559 aa20.69■□□□□ 0.9
CLN3-221ENST00000566057 BANK1Q8NDB2 785 aa20.69■□□□□ 0.9
CLN3-221ENST00000566057 TMX1Q9H3N1 280 aa20.69■□□□□ 0.9
CLN3-221ENST00000566057 XIRP2A4UGR9 3374 aa20.68■□□□□ 0.9
CLN3-221ENST00000566057 TTC28Q96AY4 2481 aa20.68■□□□□ 0.9
CLN3-221ENST00000566057 COL4A6Q14031 1691 aa20.68■□□□□ 0.9
CLN3-221ENST00000566057 MYO7AQ13402 2215 aa20.68■□□□□ 0.9
CLN3-221ENST00000566057 WNT7AO00755 349 aa20.68■□□□□ 0.9
CLN3-221ENST00000566057 GUCY1B3Q02153 619 aa20.68■□□□□ 0.9
CLN3-221ENST00000566057 GDPD5Q8WTR4 605 aa20.68■□□□□ 0.9
CLN3-221ENST00000566057 ZSCAN31Q96LW9 406 aaPredicted RBP20.68■□□□□ 0.9
CLN3-221ENST00000566057 CEP89Q96ST8 783 aa20.68■□□□□ 0.9
CLN3-221ENST00000566057 NAP1L4Q99733 375 aaKnown RBP20.68■□□□□ 0.9
CLN3-221ENST00000566057 SH2D3AQ9BRG2 576 aa20.68■□□□□ 0.9
CLN3-221ENST00000566057 NIFKQ9BYG3 293 aaKnown RBP20.68■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 94.5 ms