RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 PTGDRQ13258 359 aa11.08□□□□□ -0.64
CLN3-220ENST00000566040 PPIGQ13427 754 aaKnown RBP eCLIP11.08□□□□□ -0.64
CLN3-220ENST00000566040 CTTNQ14247 550 aaKnown RBP11.08□□□□□ -0.64
CLN3-220ENST00000566040 LPIN1Q14693 890 aa11.08□□□□□ -0.64
CLN3-220ENST00000566040 PTPAQ15257 358 aa11.08□□□□□ -0.64
CLN3-220ENST00000566040 EPHA7Q15375 998 aa11.08□□□□□ -0.64
CLN3-220ENST00000566040 SAFBQ15424 915 aaKnown RBP eCLIP11.08□□□□□ -0.64
CLN3-220ENST00000566040 FAM160B1Q5W0V3 765 aa11.08□□□□□ -0.64
CLN3-220ENST00000566040 NCAPH2Q6IBW4 605 aa11.08□□□□□ -0.64
CLN3-220ENST00000566040 DEFB128Q7Z7B8 93 aa11.08□□□□□ -0.64
CLN3-220ENST00000566040 SLFN12Q8IYM2 578 aa11.08□□□□□ -0.64
CLN3-220ENST00000566040 TMEM199Q8N511 208 aa11.08□□□□□ -0.64
CLN3-220ENST00000566040 IGSF22Q8N9C0 903 aa11.08□□□□□ -0.64
CLN3-220ENST00000566040 NAP1L4Q99733 375 aaKnown RBP11.08□□□□□ -0.64
CLN3-220ENST00000566040 LBHD1Q9BQE6 289 aaPredicted RBP11.08□□□□□ -0.64
CLN3-220ENST00000566040 EIF2AK1Q9BQI3 630 aaKnown RBP11.08□□□□□ -0.64
CLN3-220ENST00000566040 LXNQ9BS40 222 aa11.08□□□□□ -0.64
CLN3-220ENST00000566040 AZI2Q9H6S1 392 aa11.08□□□□□ -0.64
CLN3-220ENST00000566040 AGO3Q9H9G7 860 aaKnown RBP11.08□□□□□ -0.64
CLN3-220ENST00000566040 XPNPEP1Q9NQW7 623 aa11.08□□□□□ -0.64
CLN3-220ENST00000566040 ZDHHC9Q9Y397 364 aa11.08□□□□□ -0.64
CLN3-220ENST00000566040 PRUNE2Q8WUY3 3088 aa11.07□□□□□ -0.64
CLN3-220ENST00000566040 A0A087WWV3 80 aa11.07□□□□□ -0.64
CLN3-220ENST00000566040 RRN3P2A6NIE6 340 aa11.07□□□□□ -0.64
CLN3-220ENST00000566040 CAND2O75155 1236 aa11.07□□□□□ -0.64
CLN3-220ENST00000566040 GPR32O75388 356 aa11.07□□□□□ -0.64
CLN3-220ENST00000566040 LYPLA2O95372 231 aa11.07□□□□□ -0.64
CLN3-220ENST00000566040 RFC2P35250 354 aa11.07□□□□□ -0.64
CLN3-220ENST00000566040 TXKP42681 527 aa11.07□□□□□ -0.64
CLN3-220ENST00000566040 FXR2P51116 673 aaKnown RBP eCLIP11.07□□□□□ -0.64
CLN3-220ENST00000566040 CLCN3P51790 818 aa11.07□□□□□ -0.64
CLN3-220ENST00000566040 NPEPPSP55786 919 aa11.07□□□□□ -0.64
CLN3-220ENST00000566040 DEFB103AP81534 67 aa11.07□□□□□ -0.64
CLN3-220ENST00000566040 MRPS6P82932 125 aaKnown RBP11.07□□□□□ -0.64
CLN3-220ENST00000566040 CYP4A11Q02928 519 aa11.07□□□□□ -0.64
CLN3-220ENST00000566040 TMEM62Q0P6H9 643 aa11.07□□□□□ -0.64
CLN3-220ENST00000566040 BFSP2Q13515 415 aa11.07□□□□□ -0.64
CLN3-220ENST00000566040 PLEKHG4Q58EX7 1191 aa11.07□□□□□ -0.64
CLN3-220ENST00000566040 ZNF484Q5JVG2 852 aa11.07□□□□□ -0.64
CLN3-220ENST00000566040 FBXO47Q5MNV8 452 aa11.07□□□□□ -0.64
CLN3-220ENST00000566040 TMCO2Q7Z6W1 182 aaPredicted RBP11.07□□□□□ -0.64
CLN3-220ENST00000566040 FAM49AQ9H0Q0 323 aaPredicted RBP11.07□□□□□ -0.64
CLN3-220ENST00000566040 SAMM50Q9Y512 469 aa11.07□□□□□ -0.64
CLN3-220ENST00000566040 CDY2AQ9Y6F7 541 aa11.07□□□□□ -0.64
CLN3-220ENST00000566040 KDM3AQ9Y4C1 1321 aa11.07□□□□□ -0.64
CLN3-220ENST00000566040 LOC101059915A0A1B0GWI6 518 aaPredicted RBP11.06□□□□□ -0.64
CLN3-220ENST00000566040 RSPH10B2B2RC85 870 aa11.06□□□□□ -0.64
CLN3-220ENST00000566040 RSPH10BP0C881 870 aa11.06□□□□□ -0.64
CLN3-220ENST00000566040 PBX2P40425 430 aa11.06□□□□□ -0.64
CLN3-220ENST00000566040 QARSP47897 775 aaKnown RBP11.06□□□□□ -0.64
CLN3-220ENST00000566040 PSMC5P62195 406 aa11.06□□□□□ -0.64
CLN3-220ENST00000566040 XKR3Q5GH77 459 aa11.06□□□□□ -0.64
CLN3-220ENST00000566040 MCTP1Q6DN14 999 aa11.06□□□□□ -0.64
CLN3-220ENST00000566040 TAF2Q6P1X5 1199 aa11.06□□□□□ -0.64
CLN3-220ENST00000566040 PSRC1Q6PGN9 363 aaPredicted RBP11.06□□□□□ -0.64
CLN3-220ENST00000566040 OTOP2Q7RTS6 562 aa11.06□□□□□ -0.64
CLN3-220ENST00000566040 TRMT1LQ7Z2T5 733 aaKnown RBP11.06□□□□□ -0.64
CLN3-220ENST00000566040 KCNK18Q7Z418 384 aa11.06□□□□□ -0.64
CLN3-220ENST00000566040 SPRED2Q7Z698 418 aa11.06□□□□□ -0.64
CLN3-220ENST00000566040 CATSPER3Q86XQ3 398 aa11.06□□□□□ -0.64
CLN3-220ENST00000566040 C4orf19Q8IY42 314 aa11.06□□□□□ -0.64
CLN3-220ENST00000566040 CRIPAKQ8N1N5 446 aa11.06□□□□□ -0.64
CLN3-220ENST00000566040 LRRC71Q8N4P6 559 aa11.06□□□□□ -0.64
CLN3-220ENST00000566040 FAM167AQ96KS9 214 aa11.06□□□□□ -0.64
CLN3-220ENST00000566040 ADAMTS10Q9H324 1103 aa11.06□□□□□ -0.64
CLN3-220ENST00000566040 TMX1Q9H3N1 280 aa11.06□□□□□ -0.64
CLN3-220ENST00000566040 DHX33Q9H6R0 707 aaKnown RBP11.06□□□□□ -0.64
CLN3-220ENST00000566040 PCDHA12Q9UN75 941 aa11.06□□□□□ -0.64
CLN3-220ENST00000566040 NOD1Q9Y239 953 aa11.06□□□□□ -0.64
CLN3-220ENST00000566040 PLXNA4Q9HCM2 1894 aa11.06□□□□□ -0.64
CLN3-220ENST00000566040 VPS37CA5D8V6 355 aaPredicted RBP11.05□□□□□ -0.64
CLN3-220ENST00000566040 MGEA5O60502 916 aa11.05□□□□□ -0.64
CLN3-220ENST00000566040 MAFO75444 373 aaPredicted RBP11.05□□□□□ -0.64
CLN3-220ENST00000566040 VTNP04004 478 aa11.05□□□□□ -0.64
CLN3-220ENST00000566040 P4HBP07237 508 aaKnown RBP11.05□□□□□ -0.64
CLN3-220ENST00000566040 GNAT1P11488 350 aa11.05□□□□□ -0.64
CLN3-220ENST00000566040 CDC25AP30304 524 aa11.05□□□□□ -0.64
CLN3-220ENST00000566040 DDIT3P35638 169 aa11.05□□□□□ -0.64
CLN3-220ENST00000566040 PRPHP41219 470 aa11.05□□□□□ -0.64
CLN3-220ENST00000566040 TECP42680 631 aa11.05□□□□□ -0.64
CLN3-220ENST00000566040 WDR5P61964 334 aaKnown RBP11.05□□□□□ -0.64
CLN3-220ENST00000566040 MTERF2Q49AM1 385 aa11.05□□□□□ -0.64
CLN3-220ENST00000566040 RILPL1Q5EBL4 403 aa11.05□□□□□ -0.64
CLN3-220ENST00000566040 POTEGQ6S5H5 508 aa11.05□□□□□ -0.64
CLN3-220ENST00000566040 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.05□□□□□ -0.64
CLN3-220ENST00000566040 RTN4RL1Q86UN2 441 aaPredicted RBP11.05□□□□□ -0.64
CLN3-220ENST00000566040 CCDC155Q8N6L0 562 aa11.05□□□□□ -0.64
CLN3-220ENST00000566040 DBF4BQ8NFT6 615 aa11.05□□□□□ -0.64
CLN3-220ENST00000566040 CHAMP1Q96JM3 812 aa11.05□□□□□ -0.64
CLN3-220ENST00000566040 RNPC3Q96LT9 517 aaKnown RBP11.05□□□□□ -0.64
CLN3-220ENST00000566040 TTYH1Q9H313 450 aaPredicted RBP11.05□□□□□ -0.64
CLN3-220ENST00000566040 RC3H2Q9HBD1 1191 aaKnown RBP11.05□□□□□ -0.64
CLN3-220ENST00000566040 CYP26B1Q9NR63 512 aa11.05□□□□□ -0.64
CLN3-220ENST00000566040 SEPT9Q9UHD8 586 aaPredicted RBP11.05□□□□□ -0.64
CLN3-220ENST00000566040 YBX2Q9Y2T7 364 aaKnown RBP11.05□□□□□ -0.64
CLN3-220ENST00000566040 KIF3AQ9Y496 699 aa11.05□□□□□ -0.64
CLN3-220ENST00000566040 CLIC4Q9Y696 253 aa11.05□□□□□ -0.64
CLN3-220ENST00000566040 TRIP11Q15643 1979 aa11.05□□□□□ -0.64
CLN3-220ENST00000566040 PDCD11Q14690 1871 aaKnown RBP11.04□□□□□ -0.64
CLN3-220ENST00000566040 H3BQV1 296 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms