RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 ASB2Q96Q27 587 aa16.83■□□□□ 0.28
CLN3-213ENST00000565047 UNC45AQ9H3U1 944 aa16.83■□□□□ 0.28
CLN3-213ENST00000565047 GABBR1Q9UBS5 961 aa16.83■□□□□ 0.28
CLN3-213ENST00000565047 PADI3Q9ULW8 664 aa16.83■□□□□ 0.28
CLN3-213ENST00000565047 WDR64B1ANS9 1081 aa16.82■□□□□ 0.28
CLN3-213ENST00000565047 GPR32O75388 356 aa16.82■□□□□ 0.28
CLN3-213ENST00000565047 CDKL5O76039 1030 aa16.82■□□□□ 0.28
CLN3-213ENST00000565047 UPP2O95045 317 aa16.82■□□□□ 0.28
CLN3-213ENST00000565047 ST3GAL1Q11201 340 aa16.82■□□□□ 0.28
CLN3-213ENST00000565047 ANKRD1Q15327 319 aa16.82■□□□□ 0.28
CLN3-213ENST00000565047 UGCGQ16739 394 aa16.82■□□□□ 0.28
CLN3-213ENST00000565047 TJAP1Q5JTD0 557 aa16.82■□□□□ 0.28
CLN3-213ENST00000565047 OXER1Q8TDS5 423 aa16.82■□□□□ 0.28
CLN3-213ENST00000565047 CEP89Q96ST8 783 aa16.82■□□□□ 0.28
CLN3-213ENST00000565047 YME1L1Q96TA2 773 aa16.82■□□□□ 0.28
CLN3-213ENST00000565047 DISC1Q9NRI5 854 aa16.82■□□□□ 0.28
CLN3-213ENST00000565047 THEGQ9P2T0 379 aa16.82■□□□□ 0.28
CLN3-213ENST00000565047 TTC3P53804 2025 aa16.82■□□□□ 0.28
CLN3-213ENST00000565047 WDR81Q562E7 1941 aa16.81■□□□□ 0.28
CLN3-213ENST00000565047 GTPBP6O43824 516 aaPredicted RBP16.81■□□□□ 0.28
CLN3-213ENST00000565047 SLC37A4O43826 429 aa16.81■□□□□ 0.28
CLN3-213ENST00000565047 NONOQ15233 471 aaKnown RBP eCLIP16.81■□□□□ 0.28
CLN3-213ENST00000565047 TARBP2Q15633 366 aaKnown RBP16.81■□□□□ 0.28
CLN3-213ENST00000565047 EPC2Q52LR7 807 aa16.81■□□□□ 0.28
CLN3-213ENST00000565047 EARS2Q5JPH6 523 aaKnown RBP16.81■□□□□ 0.28
CLN3-213ENST00000565047 NECAB1Q8N987 351 aa16.81■□□□□ 0.28
CLN3-213ENST00000565047 TNFRSF25Q93038 417 aa16.81■□□□□ 0.28
CLN3-213ENST00000565047 GTF3C6Q969F1 213 aa16.81■□□□□ 0.28
CLN3-213ENST00000565047 TSPYL2Q9H2G4 693 aaPredicted RBP16.81■□□□□ 0.28
CLN3-213ENST00000565047 ERVK-5Q9HDB9 667 aa16.81■□□□□ 0.28
CLN3-213ENST00000565047 KCNMB3Q9NPA1 279 aa16.81■□□□□ 0.28
CLN3-213ENST00000565047 MTUS1Q9ULD2 1270 aa16.81■□□□□ 0.28
CLN3-213ENST00000565047 NOC2LQ9Y3T9 749 aaKnown RBP16.81■□□□□ 0.28
CLN3-213ENST00000565047 MGEA5O60502 916 aa16.8■□□□□ 0.28
CLN3-213ENST00000565047 DGKIO75912 1065 aa16.8■□□□□ 0.28
CLN3-213ENST00000565047 SFNP31947 248 aa16.8■□□□□ 0.28
CLN3-213ENST00000565047 MRPS5P82675 430 aaKnown RBP16.8■□□□□ 0.28
CLN3-213ENST00000565047 INF2Q27J81 1249 aa16.8■□□□□ 0.28
CLN3-213ENST00000565047 LRCH2Q5VUJ6 765 aa16.8■□□□□ 0.28
CLN3-213ENST00000565047 PPP4R3AQ6IN85 833 aa16.8■□□□□ 0.28
CLN3-213ENST00000565047 KRT25Q7Z3Z0 450 aa16.8■□□□□ 0.28
CLN3-213ENST00000565047 RDM1Q8NG50 284 aa16.8■□□□□ 0.28
CLN3-213ENST00000565047 CLP1Q92989 425 aaKnown RBP16.8■□□□□ 0.28
CLN3-213ENST00000565047 TEKT3Q9BXF9 490 aa16.8■□□□□ 0.28
CLN3-213ENST00000565047 FTHL17Q9BXU8 183 aa16.8■□□□□ 0.28
CLN3-213ENST00000565047 LOXHD1Q8IVV2 1947 aa16.79■□□□□ 0.28
CLN3-213ENST00000565047 C5orf67F2Z3F1 127 aa16.79■□□□□ 0.28
CLN3-213ENST00000565047 H3BNC9 293 aa16.79■□□□□ 0.28
CLN3-213ENST00000565047 GAS7O60861 476 aa16.79■□□□□ 0.28
CLN3-213ENST00000565047 OATP04181 439 aa16.79■□□□□ 0.28
CLN3-213ENST00000565047 CENPBP07199 599 aaPredicted RBP16.79■□□□□ 0.28
CLN3-213ENST00000565047 BMP1P13497 986 aa16.79■□□□□ 0.28
CLN3-213ENST00000565047 JAK3P52333 1124 aa16.79■□□□□ 0.28
CLN3-213ENST00000565047 TFF2Q03403 129 aa16.79■□□□□ 0.28
CLN3-213ENST00000565047 TMEM266Q2M3C6 531 aa16.79■□□□□ 0.28
CLN3-213ENST00000565047 FAM43BQ6ZT52 329 aaPredicted RBP16.79■□□□□ 0.28
CLN3-213ENST00000565047 TMEM192Q8IY95 271 aa16.79■□□□□ 0.28
CLN3-213ENST00000565047 CKAP2LQ8IYA6 745 aa16.79■□□□□ 0.28
CLN3-213ENST00000565047 MICALL1Q8N3F8 863 aa16.79■□□□□ 0.28
CLN3-213ENST00000565047 NSUN7Q8NE18 718 aaKnown RBP16.79■□□□□ 0.28
CLN3-213ENST00000565047 FBXO22Q8NEZ5 403 aa16.79■□□□□ 0.28
CLN3-213ENST00000565047 SYMPKQ92797 1274 aaKnown RBP16.79■□□□□ 0.28
CLN3-213ENST00000565047 HAS1Q92839 578 aa16.79■□□□□ 0.28
CLN3-213ENST00000565047 FAM167AQ96KS9 214 aa16.79■□□□□ 0.28
CLN3-213ENST00000565047 SAMD11Q96NU1 681 aa16.79■□□□□ 0.28
CLN3-213ENST00000565047 NIFKQ9BYG3 293 aaKnown RBP16.79■□□□□ 0.28
CLN3-213ENST00000565047 ADAMTS10Q9H324 1103 aa16.79■□□□□ 0.28
CLN3-213ENST00000565047 ORC3Q9UBD5 711 aaPredicted RBP16.79■□□□□ 0.28
CLN3-213ENST00000565047 MYH9P35579 1960 aaKnown RBP16.78■□□□□ 0.28
CLN3-213ENST00000565047 TTC28Q96AY4 2481 aa16.78■□□□□ 0.28
CLN3-213ENST00000565047 ADGRA3Q8IWK6 1321 aa16.78■□□□□ 0.28
CLN3-213ENST00000565047 M0QZ92 97 aa16.78■□□□□ 0.28
CLN3-213ENST00000565047 MAGEB2O15479 319 aa16.78■□□□□ 0.28
CLN3-213ENST00000565047 NEK4P51957 841 aa16.78■□□□□ 0.28
CLN3-213ENST00000565047 CRYBB1P53674 252 aaPredicted RBP16.78■□□□□ 0.28
CLN3-213ENST00000565047 PRKCEQ02156 737 aa16.78■□□□□ 0.28
CLN3-213ENST00000565047 KIF2CQ99661 725 aa16.78■□□□□ 0.28
CLN3-213ENST00000565047 DDX25Q9UHL0 483 aaKnown RBP16.78■□□□□ 0.28
CLN3-213ENST00000565047 VAV3Q9UKW4 847 aa16.78■□□□□ 0.28
CLN3-213ENST00000565047 CEP131Q9UPN4 1083 aa16.78■□□□□ 0.28
CLN3-213ENST00000565047 SAMM50Q9Y512 469 aa16.78■□□□□ 0.28
CLN3-213ENST00000565047 EVPLQ92817 2033 aa16.77■□□□□ 0.28
CLN3-213ENST00000565047 IGKV6-21A0A0C4DH24 114 aa16.77■□□□□ 0.28
CLN3-213ENST00000565047 FAM205CA6NFA0 338 aa16.77■□□□□ 0.28
CLN3-213ENST00000565047 EML1O00423 815 aa16.77■□□□□ 0.28
CLN3-213ENST00000565047 CHMP2AO43633 222 aa16.77■□□□□ 0.28
CLN3-213ENST00000565047 VTNP04004 478 aa16.77■□□□□ 0.28
CLN3-213ENST00000565047 BMPR1AP36894 532 aa16.77■□□□□ 0.28
CLN3-213ENST00000565047 CLCN3P51790 818 aa16.77■□□□□ 0.28
CLN3-213ENST00000565047 PAK2Q13177 524 aa16.77■□□□□ 0.28
CLN3-213ENST00000565047 PPP2R5CQ13362 524 aa16.77■□□□□ 0.28
CLN3-213ENST00000565047 DSC3Q14574 896 aa16.77■□□□□ 0.28
CLN3-213ENST00000565047 KIZQ2M2Z5 673 aa16.77■□□□□ 0.28
CLN3-213ENST00000565047 LETM2Q2VYF4 491 aa16.77■□□□□ 0.28
CLN3-213ENST00000565047 C8orf34Q49A92 452 aa16.77■□□□□ 0.28
CLN3-213ENST00000565047 EFCAB12Q6NXP0 572 aa16.77■□□□□ 0.28
CLN3-213ENST00000565047 TRMT1LQ7Z2T5 733 aaKnown RBP16.77■□□□□ 0.28
CLN3-213ENST00000565047 NEK8Q86SG6 692 aa16.77■□□□□ 0.28
CLN3-213ENST00000565047 FAM228AQ86W67 206 aa16.77■□□□□ 0.28
CLN3-213ENST00000565047 RGS18Q9NS28 235 aa16.77■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 75 ms