RNA–Protein interactions for RNA: ENST00000563297.5

CLK3-211, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 526 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-211ENST00000563297 NID2Q14112 1375 aa17.88■□□□□ 0.45
CLK3-211ENST00000563297 NCK2O43639 380 aa17.87■□□□□ 0.45
CLK3-211ENST00000563297 STAG3L1P0CL83 205 aa17.87■□□□□ 0.45
CLK3-211ENST00000563297 GNA11P29992 359 aa17.87■□□□□ 0.45
CLK3-211ENST00000563297 CIITAP33076 1130 aa17.87■□□□□ 0.45
CLK3-211ENST00000563297 LTBRP36941 435 aa17.87■□□□□ 0.45
CLK3-211ENST00000563297 NFX1Q12986 1120 aaKnown RBP17.87■□□□□ 0.45
CLK3-211ENST00000563297 CAMK1Q14012 370 aa17.87■□□□□ 0.45
CLK3-211ENST00000563297 CTC1Q2NKJ3 1217 aa17.87■□□□□ 0.45
CLK3-211ENST00000563297 ZNF746Q6NUN9 644 aaPredicted RBP17.87■□□□□ 0.45
CLK3-211ENST00000563297 P2RX5Q93086 422 aa17.87■□□□□ 0.45
CLK3-211ENST00000563297 ERVK-5Q9HDB9 667 aa17.87■□□□□ 0.45
CLK3-211ENST00000563297 ALG13Q9NP73 1137 aaKnown RBP17.87■□□□□ 0.45
CLK3-211ENST00000563297 CLDND1Q9NY35 253 aa17.87■□□□□ 0.45
CLK3-211ENST00000563297 GINS2Q9Y248 185 aa17.87■□□□□ 0.45
CLK3-211ENST00000563297 NOC2LQ9Y3T9 749 aaKnown RBP17.87■□□□□ 0.45
CLK3-211ENST00000563297 COL1A2P08123 1366 aa17.87■□□□□ 0.45
CLK3-211ENST00000563297 WDR81Q562E7 1941 aa17.86■□□□□ 0.45
CLK3-211ENST00000563297 EDIL3O43854 480 aa17.86■□□□□ 0.45
CLK3-211ENST00000563297 MGEA5O60502 916 aa17.86■□□□□ 0.45
CLK3-211ENST00000563297 PPFIA3O75145 1194 aa17.86■□□□□ 0.45
CLK3-211ENST00000563297 PDIA3P30101 505 aaKnown RBP17.86■□□□□ 0.45
CLK3-211ENST00000563297 SETQ01105 290 aaPredicted RBP17.86■□□□□ 0.45
CLK3-211ENST00000563297 AKAP17AQ02040 695 aaKnown RBP17.86■□□□□ 0.45
CLK3-211ENST00000563297 HYAL1Q12794 435 aa17.86■□□□□ 0.45
CLK3-211ENST00000563297 PAN2Q504Q3 1202 aaKnown RBP17.86■□□□□ 0.45
CLK3-211ENST00000563297 PRR16Q569H4 304 aa17.86■□□□□ 0.45
CLK3-211ENST00000563297 FAM43BQ6ZT52 329 aaPredicted RBP17.86■□□□□ 0.45
CLK3-211ENST00000563297 SPPL3Q8TCT6 385 aa17.86■□□□□ 0.45
CLK3-211ENST00000563297 RASGRP4Q8TDF6 673 aa17.86■□□□□ 0.45
CLK3-211ENST00000563297 TMEM40Q8WWA1 233 aa17.86■□□□□ 0.45
CLK3-211ENST00000563297 BBXQ8WY36 941 aaPredicted RBP17.86■□□□□ 0.45
CLK3-211ENST00000563297 C11orf16Q9NQ32 467 aa17.86■□□□□ 0.45
CLK3-211ENST00000563297 GPR37L1O60883 481 aa17.85■□□□□ 0.45
CLK3-211ENST00000563297 RPS6KA5O75582 802 aa17.85■□□□□ 0.45
CLK3-211ENST00000563297 MMP1P03956 469 aa17.85■□□□□ 0.45
CLK3-211ENST00000563297 ITGB1P05556 798 aa17.85■□□□□ 0.45
CLK3-211ENST00000563297 IFNAR1P17181 557 aa17.85■□□□□ 0.45
CLK3-211ENST00000563297 DNAJB1P25685 340 aa17.85■□□□□ 0.45
CLK3-211ENST00000563297 PSMA5P28066 241 aa17.85■□□□□ 0.45
CLK3-211ENST00000563297 SARSP49591 514 aaKnown RBP17.85■□□□□ 0.45
CLK3-211ENST00000563297 GATMP50440 423 aa17.85■□□□□ 0.45
CLK3-211ENST00000563297 EVCP57679 992 aa17.85■□□□□ 0.45
CLK3-211ENST00000563297 NAALADL2Q58DX5 795 aa17.85■□□□□ 0.45
CLK3-211ENST00000563297 TMEM31Q5JXX7 168 aa17.85■□□□□ 0.45
CLK3-211ENST00000563297 TRMT1LQ7Z2T5 733 aaKnown RBP17.85■□□□□ 0.45
CLK3-211ENST00000563297 CKAP2LQ8IYA6 745 aa17.85■□□□□ 0.45
CLK3-211ENST00000563297 SMAP1Q8IYB5 467 aaPredicted RBP17.85■□□□□ 0.45
CLK3-211ENST00000563297 BICD2Q8TD16 824 aa17.85■□□□□ 0.45
CLK3-211ENST00000563297 LENG9Q96B70 501 aa17.85■□□□□ 0.45
CLK3-211ENST00000563297 RNF26Q9BY78 433 aaPredicted RBP17.85■□□□□ 0.45
CLK3-211ENST00000563297 PCDHA10Q9Y5I2 948 aa17.85■□□□□ 0.45
CLK3-211ENST00000563297 C22orf31O95567 290 aa17.84■□□□□ 0.45
CLK3-211ENST00000563297 PSAPP07602 524 aa17.84■□□□□ 0.45
CLK3-211ENST00000563297 SSTR3P32745 418 aaPredicted RBP17.84■□□□□ 0.45
CLK3-211ENST00000563297 GTF2F1P35269 517 aaKnown RBP eCLIP17.84■□□□□ 0.45
CLK3-211ENST00000563297 CCT2P78371 535 aaKnown RBP17.84■□□□□ 0.45
CLK3-211ENST00000563297 DLX2Q07687 328 aaPredicted RBP17.84■□□□□ 0.45
CLK3-211ENST00000563297 KLHL23Q8NBE8 558 aa17.84■□□□□ 0.45
CLK3-211ENST00000563297 CCDC136Q96JN2 1154 aa17.84■□□□□ 0.45
CLK3-211ENST00000563297 ADAM2Q99965 735 aa17.84■□□□□ 0.45
CLK3-211ENST00000563297 SLC26A6Q9BXS9 759 aa17.84■□□□□ 0.45
CLK3-211ENST00000563297 NCOA5Q9HCD5 579 aaKnown RBP17.84■□□□□ 0.45
CLK3-211ENST00000563297 RGS18Q9NS28 235 aa17.84■□□□□ 0.45
CLK3-211ENST00000563297 VPS54Q9P1Q0 977 aa17.84■□□□□ 0.45
CLK3-211ENST00000563297 GABBR1Q9UBS5 961 aa17.84■□□□□ 0.45
CLK3-211ENST00000563297 LRFN2Q9ULH4 789 aa17.84■□□□□ 0.45
CLK3-211ENST00000563297 ST3GAL5Q9UNP4 418 aa17.84■□□□□ 0.45
CLK3-211ENST00000563297 PCDHB7Q9Y5E2 793 aa17.84■□□□□ 0.45
CLK3-211ENST00000563297 KIAA1671Q9BY89 1806 aa17.84■□□□□ 0.45
CLK3-211ENST00000563297 C9IYK1 514 aa17.83■□□□□ 0.44
CLK3-211ENST00000563297 GPR182O15218 404 aa17.83■□□□□ 0.44
CLK3-211ENST00000563297 GPR32O75388 356 aa17.83■□□□□ 0.44
CLK3-211ENST00000563297 REC8O95072 547 aa17.83■□□□□ 0.44
CLK3-211ENST00000563297 CSPG5O95196 566 aa17.83■□□□□ 0.44
CLK3-211ENST00000563297 CRYBB1P53674 252 aaPredicted RBP17.83■□□□□ 0.44
CLK3-211ENST00000563297 KIZQ2M2Z5 673 aa17.83■□□□□ 0.44
CLK3-211ENST00000563297 ODR4Q5SWX8 454 aa17.83■□□□□ 0.44
CLK3-211ENST00000563297 METTL13Q8N6R0 699 aa17.83■□□□□ 0.44
CLK3-211ENST00000563297 CCDC148Q8NFR7 591 aa17.83■□□□□ 0.44
CLK3-211ENST00000563297 IGFLR1Q9H665 355 aa17.83■□□□□ 0.44
CLK3-211ENST00000563297 FAM50BQ9Y247 325 aa17.83■□□□□ 0.44
CLK3-211ENST00000563297 FNDC1Q4ZHG4 1894 aaPredicted RBP17.83■□□□□ 0.44
CLK3-211ENST00000563297 DENND3A2RUS2 1198 aa17.82■□□□□ 0.44
CLK3-211ENST00000563297 FAM86C2PA6NEL3 165 aa17.82■□□□□ 0.44
CLK3-211ENST00000563297 VTNP04004 478 aa17.82■□□□□ 0.44
CLK3-211ENST00000563297 IBSPP21815 317 aaPredicted RBP17.82■□□□□ 0.44
CLK3-211ENST00000563297 USP11P51784 963 aa17.82■□□□□ 0.44
CLK3-211ENST00000563297 FAM189BP81408 668 aa17.82■□□□□ 0.44
CLK3-211ENST00000563297 ADAM15Q13444 863 aa17.82■□□□□ 0.44
CLK3-211ENST00000563297 FAM102BQ5T8I3 360 aa17.82■□□□□ 0.44
CLK3-211ENST00000563297 SLC24A5Q71RS6 500 aa17.82■□□□□ 0.44
CLK3-211ENST00000563297 RUFY3Q7L099 469 aa17.82■□□□□ 0.44
CLK3-211ENST00000563297 FAM228AQ86W67 206 aa17.82■□□□□ 0.44
CLK3-211ENST00000563297 POF1BQ8WVV4 589 aa17.82■□□□□ 0.44
CLK3-211ENST00000563297 PPP1R16BQ96T49 567 aa17.82■□□□□ 0.44
CLK3-211ENST00000563297 OSMRQ99650 979 aa17.82■□□□□ 0.44
CLK3-211ENST00000563297 ZSWIM6Q9HCJ5 1215 aa17.82■□□□□ 0.44
CLK3-211ENST00000563297 SH3GLB2Q9NR46 395 aa17.82■□□□□ 0.44
CLK3-211ENST00000563297 C1orf112Q9NSG2 853 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms