RNA–Protein interactions for RNA: ENST00000560858.1

SPG11-223, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 447 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-223ENST00000560858 CCDC184Q52MB2 194 aa3.3□□□□□ -1.88
SPG11-223ENST00000560858 PROSER1Q86XN7 944 aa3.3□□□□□ -1.88
SPG11-223ENST00000560858 CCDC103Q8IW40 242 aa3.3□□□□□ -1.88
SPG11-223ENST00000560858 TRIM59Q8IWR1 403 aa3.3□□□□□ -1.88
SPG11-223ENST00000560858 ZNF808Q8N4W9 903 aaPredicted RBP3.3□□□□□ -1.88
SPG11-223ENST00000560858 ZNF513Q8N8E2 541 aaPredicted RBP3.3□□□□□ -1.88
SPG11-223ENST00000560858 RCBTB1Q8NDN9 531 aa3.3□□□□□ -1.88
SPG11-223ENST00000560858 OR6P1Q8NGX9 317 aa3.3□□□□□ -1.88
SPG11-223ENST00000560858 TTLL11Q8NHH1 800 aa3.3□□□□□ -1.88
SPG11-223ENST00000560858 KLHL6Q8WZ60 621 aa3.3□□□□□ -1.88
SPG11-223ENST00000560858 SCYL1Q96KG9 808 aa3.3□□□□□ -1.88
SPG11-223ENST00000560858 PLA2G12BQ9BX93 195 aa3.3□□□□□ -1.88
SPG11-223ENST00000560858 SLC2A4RGQ9NR83 387 aa3.3□□□□□ -1.88
SPG11-223ENST00000560858 TLR9Q9NR96 1032 aa3.3□□□□□ -1.88
SPG11-223ENST00000560858 KCND1Q9NSA2 647 aa3.3□□□□□ -1.88
SPG11-223ENST00000560858 PLA2G3Q9NZ20 509 aa3.3□□□□□ -1.88
SPG11-223ENST00000560858 PTGFRNQ9P2B2 879 aa3.3□□□□□ -1.88
SPG11-223ENST00000560858 APEX2Q9UBZ4 518 aa3.3□□□□□ -1.88
SPG11-223ENST00000560858 CDK11AQ9UQ88 783 aaPredicted RBP3.3□□□□□ -1.88
SPG11-223ENST00000560858 GIT1Q9Y2X7 761 aa3.3□□□□□ -1.88
SPG11-223ENST00000560858 NUB1Q9Y5A7 615 aa3.3□□□□□ -1.88
SPG11-223ENST00000560858 CLTCL1P53675 1640 aa3.3□□□□□ -1.88
SPG11-223ENST00000560858 ZFYVE16Q7Z3T8 1539 aa3.29□□□□□ -1.88
SPG11-223ENST00000560858 PLA2R1Q13018 1463 aa3.29□□□□□ -1.88
SPG11-223ENST00000560858 PARD3Q8TEW0 1356 aa3.29□□□□□ -1.88
SPG11-223ENST00000560858 CYP27B1O15528 508 aa3.29□□□□□ -1.88
SPG11-223ENST00000560858 NUDT3O95989 172 aa3.29□□□□□ -1.88
SPG11-223ENST00000560858 MSX2P35548 267 aaPredicted RBP3.29□□□□□ -1.88
SPG11-223ENST00000560858 LTBRP36941 435 aa3.29□□□□□ -1.88
SPG11-223ENST00000560858 ZNF143P52747 638 aaPredicted RBP3.29□□□□□ -1.88
SPG11-223ENST00000560858 PFKPQ01813 784 aa3.29□□□□□ -1.88
SPG11-223ENST00000560858 GRIN1Q05586 938 aa3.29□□□□□ -1.88
SPG11-223ENST00000560858 FSTL1Q12841 308 aa3.29□□□□□ -1.88
SPG11-223ENST00000560858 ZKSCAN2Q63HK3 967 aa3.29□□□□□ -1.88
SPG11-223ENST00000560858 VHLLQ6RSH7 139 aa3.29□□□□□ -1.88
SPG11-223ENST00000560858 DPP8Q6V1X1 898 aaPredicted RBP3.29□□□□□ -1.88
SPG11-223ENST00000560858 CCDC140Q96MF4 163 aa3.29□□□□□ -1.88
SPG11-223ENST00000560858 SLC6A20Q9NP91 592 aa3.29□□□□□ -1.88
SPG11-223ENST00000560858 ADARB2Q9NS39 739 aaKnown RBP3.29□□□□□ -1.88
SPG11-223ENST00000560858 PUF60Q9UHX1 559 aaKnown RBP3.29□□□□□ -1.88
SPG11-223ENST00000560858 NUDCQ9Y266 331 aa3.29□□□□□ -1.88
SPG11-223ENST00000560858 MROH2AA6NES4 1674 aa3.29□□□□□ -1.88
SPG11-223ENST00000560858 MROH1Q8NDA8 1641 aa3.29□□□□□ -1.88
SPG11-223ENST00000560858 USP32Q8NFA0 1604 aa3.29□□□□□ -1.88
SPG11-223ENST00000560858 ARHGAP5Q13017 1502 aa3.29□□□□□ -1.88
SPG11-223ENST00000560858 KIF1BO60333 1816 aa3.28□□□□□ -1.88
SPG11-223ENST00000560858 ESYT3A0FGR9 886 aa3.28□□□□□ -1.88
SPG11-223ENST00000560858 KRTAP29-1A8MX34 341 aaPredicted RBP3.28□□□□□ -1.88
SPG11-223ENST00000560858 CPP00450 1065 aa3.28□□□□□ -1.88
SPG11-223ENST00000560858 KRT4P19013 534 aa3.28□□□□□ -1.88
SPG11-223ENST00000560858 ADRA1BP35368 520 aa3.28□□□□□ -1.88
SPG11-223ENST00000560858 ECI1P42126 302 aa3.28□□□□□ -1.88
SPG11-223ENST00000560858 COL10A1Q03692 680 aa3.28□□□□□ -1.88
SPG11-223ENST00000560858 FOXL1Q12952 345 aa3.28□□□□□ -1.88
SPG11-223ENST00000560858 ACBD5Q5T8D3 534 aaPredicted RBP3.28□□□□□ -1.88
SPG11-223ENST00000560858 CCDC81Q6ZN84 652 aa3.28□□□□□ -1.88
SPG11-223ENST00000560858 BHLHA9Q7RTU4 235 aa3.28□□□□□ -1.88
SPG11-223ENST00000560858 ADGRE4PQ86SQ3 457 aa3.28□□□□□ -1.88
SPG11-223ENST00000560858 GLCCI1Q86VQ1 547 aa3.28□□□□□ -1.88
SPG11-223ENST00000560858 TMPRSS6Q8IU80 811 aa3.28□□□□□ -1.88
SPG11-223ENST00000560858 CLEC4DQ8WXI8 215 aa3.28□□□□□ -1.88
SPG11-223ENST00000560858 TACO1Q9BSH4 297 aaKnown RBP3.28□□□□□ -1.88
SPG11-223ENST00000560858 NELFAQ9H3P2 528 aa3.28□□□□□ -1.88
SPG11-223ENST00000560858 RIOX1Q9H6W3 641 aa3.28□□□□□ -1.88
SPG11-223ENST00000560858 CEP72Q9P209 647 aa3.28□□□□□ -1.88
SPG11-223ENST00000560858 CFDP1Q9UEE9 299 aaPredicted RBP3.28□□□□□ -1.88
SPG11-223ENST00000560858 ABCA6Q8N139 1617 aa3.28□□□□□ -1.88
SPG11-223ENST00000560858 UHRF1BP1LA0JNW5 1464 aa3.28□□□□□ -1.88
SPG11-223ENST00000560858 WDR7Q9Y4E6 1490 aa3.28□□□□□ -1.88
SPG11-223ENST00000560858 CCDC144AA2RUR9 1427 aa3.27□□□□□ -1.89
SPG11-223ENST00000560858 SHPRHQ149N8 1683 aa3.27□□□□□ -1.89
SPG11-223ENST00000560858 MAP3K4Q9Y6R4 1608 aa3.27□□□□□ -1.89
SPG11-223ENST00000560858 MYBBP1AQ9BQG0 1328 aaKnown RBP3.27□□□□□ -1.89
SPG11-223ENST00000560858 ERCC6L2Q5T890 1561 aa3.27□□□□□ -1.89
SPG11-223ENST00000560858 MASP2O00187 686 aa3.27□□□□□ -1.89
SPG11-223ENST00000560858 ARNTLO00327 626 aa3.27□□□□□ -1.89
SPG11-223ENST00000560858 SLC27A2O14975 620 aa3.27□□□□□ -1.89
SPG11-223ENST00000560858 GCP02774 474 aa3.27□□□□□ -1.89
SPG11-223ENST00000560858 SNRPB2P08579 225 aaKnown RBP3.27□□□□□ -1.89
SPG11-223ENST00000560858 FAHP16930 419 aa3.27□□□□□ -1.89
SPG11-223ENST00000560858 GIPRP48546 466 aa3.27□□□□□ -1.89
SPG11-223ENST00000560858 RRADP55042 308 aa3.27□□□□□ -1.89
SPG11-223ENST00000560858 IRX6P78412 446 aaPredicted RBP3.27□□□□□ -1.89
SPG11-223ENST00000560858 CRHR2Q13324 411 aa3.27□□□□□ -1.89
SPG11-223ENST00000560858 NFYCQ13952 458 aa3.27□□□□□ -1.89
SPG11-223ENST00000560858 GRM7Q14831 915 aa3.27□□□□□ -1.89
SPG11-223ENST00000560858 NOLC1Q14978 699 aaKnown RBP eCLIP3.27□□□□□ -1.89
SPG11-223ENST00000560858 TESK1Q15569 626 aa3.27□□□□□ -1.89
SPG11-223ENST00000560858 PAN2Q504Q3 1202 aaKnown RBP3.27□□□□□ -1.89
SPG11-223ENST00000560858 ZNF326Q5BKZ1 582 aaKnown RBP3.27□□□□□ -1.89
SPG11-223ENST00000560858 PPIL6Q8IXY8 311 aa3.27□□□□□ -1.89
SPG11-223ENST00000560858 RPUSD2Q8IZ73 545 aaKnown RBP3.27□□□□□ -1.89
SPG11-223ENST00000560858 TMEM87AQ8NBN3 555 aa3.27□□□□□ -1.89
SPG11-223ENST00000560858 MICAL1Q8TDZ2 1067 aa3.27□□□□□ -1.89
SPG11-223ENST00000560858 MRGPRX3Q96LB0 322 aa3.27□□□□□ -1.89
SPG11-223ENST00000560858 SPATA32Q96LK8 384 aa3.27□□□□□ -1.89
SPG11-223ENST00000560858 FBXL7Q9UJT9 491 aa3.27□□□□□ -1.89
SPG11-223ENST00000560858 PPLO60437 1756 aa3.27□□□□□ -1.89
SPG11-223ENST00000560858 MYOM2P54296 1465 aa3.27□□□□□ -1.89
SPG11-223ENST00000560858 NUP155O75694 1391 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms