RNA–Protein interactions for RNA: ENST00000560299.1

SPG11-221, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 437 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-221ENST00000560299 BRCA2P51587 3418 aa7.16□□□□□ -1.26
SPG11-221ENST00000560299 SMTNL1A8MU46 457 aa7.15□□□□□ -1.26
SPG11-221ENST00000560299 BECN2A8MW95 431 aa7.15□□□□□ -1.26
SPG11-221ENST00000560299 E9PMD0 336 aa7.15□□□□□ -1.26
SPG11-221ENST00000560299 BIN1O00499 593 aa7.15□□□□□ -1.26
SPG11-221ENST00000560299 DUSP11O75319 330 aaKnown RBP7.15□□□□□ -1.26
SPG11-221ENST00000560299 TBCAO75347 108 aaKnown RBP7.15□□□□□ -1.26
SPG11-221ENST00000560299 KIF20AO95235 890 aa7.15□□□□□ -1.26
SPG11-221ENST00000560299 CCNE2O96020 404 aa7.15□□□□□ -1.26
SPG11-221ENST00000560299 PYGBP11216 843 aa7.15□□□□□ -1.26
SPG11-221ENST00000560299 CCL5P13501 91 aa7.15□□□□□ -1.26
SPG11-221ENST00000560299 IDEP14735 1019 aa7.15□□□□□ -1.26
SPG11-221ENST00000560299 CST5P28325 142 aaPredicted RBP7.15□□□□□ -1.26
SPG11-221ENST00000560299 YWHABP31946 246 aaKnown RBP7.15□□□□□ -1.26
SPG11-221ENST00000560299 SARSP49591 514 aaKnown RBP7.15□□□□□ -1.26
SPG11-221ENST00000560299 SLC26A2P50443 739 aa7.15□□□□□ -1.26
SPG11-221ENST00000560299 STAT5BP51692 787 aa7.15□□□□□ -1.26
SPG11-221ENST00000560299 TPM4P67936 248 aa7.15□□□□□ -1.26
SPG11-221ENST00000560299 SP2Q02086 613 aa7.15□□□□□ -1.26
SPG11-221ENST00000560299 TNFAIP2Q03169 654 aa7.15□□□□□ -1.26
SPG11-221ENST00000560299 CACNB2Q08289 660 aaPredicted RBP7.15□□□□□ -1.26
SPG11-221ENST00000560299 CUL4BQ13620 913 aa7.15□□□□□ -1.26
SPG11-221ENST00000560299 ECM1Q16610 540 aa7.15□□□□□ -1.26
SPG11-221ENST00000560299 CCDC144BQ3MJ40 725 aa7.15□□□□□ -1.26
SPG11-221ENST00000560299 DUSP28Q4G0W2 176 aa7.15□□□□□ -1.26
SPG11-221ENST00000560299 XKR3Q5GH77 459 aa7.15□□□□□ -1.26
SPG11-221ENST00000560299 TAPT1Q6NXT6 567 aa7.15□□□□□ -1.26
SPG11-221ENST00000560299 UNC13DQ70J99 1090 aa7.15□□□□□ -1.26
SPG11-221ENST00000560299 GPBP1Q86WP2 473 aa7.15□□□□□ -1.26
SPG11-221ENST00000560299 GRAMD1CQ8IYS0 662 aa7.15□□□□□ -1.26
SPG11-221ENST00000560299 PDCD7Q8N8D1 485 aaKnown RBP7.15□□□□□ -1.26
SPG11-221ENST00000560299 ARRDC4Q8NCT1 418 aa7.15□□□□□ -1.26
SPG11-221ENST00000560299 BANK1Q8NDB2 785 aa7.15□□□□□ -1.26
SPG11-221ENST00000560299 ANP32BQ92688 251 aaKnown RBP7.15□□□□□ -1.26
SPG11-221ENST00000560299 DDX12PQ92771 950 aa7.15□□□□□ -1.26
SPG11-221ENST00000560299 STAMQ92783 540 aa7.15□□□□□ -1.26
SPG11-221ENST00000560299 GLG1Q92896 1179 aa7.15□□□□□ -1.26
SPG11-221ENST00000560299 RNF166Q96A37 237 aaPredicted RBP7.15□□□□□ -1.26
SPG11-221ENST00000560299 EMID1Q96A84 441 aaPredicted RBP7.15□□□□□ -1.26
SPG11-221ENST00000560299 SPATA33Q96N06 139 aa7.15□□□□□ -1.26
SPG11-221ENST00000560299 TSEN34Q9BSV6 310 aaKnown RBP7.15□□□□□ -1.26
SPG11-221ENST00000560299 TIPINQ9BVW5 301 aa7.15□□□□□ -1.26
SPG11-221ENST00000560299 TRIM9Q9C026 710 aa7.15□□□□□ -1.26
SPG11-221ENST00000560299 KATNBL1Q9H079 304 aa7.15□□□□□ -1.26
SPG11-221ENST00000560299 XRN2Q9H0D6 950 aaKnown RBP eCLIP7.15□□□□□ -1.26
SPG11-221ENST00000560299 BLZF1Q9H2G9 400 aa7.15□□□□□ -1.26
SPG11-221ENST00000560299 BHMT2Q9H2M3 363 aa7.15□□□□□ -1.26
SPG11-221ENST00000560299 SMARCAD1Q9H4L7 1026 aa7.15□□□□□ -1.26
SPG11-221ENST00000560299 DDX20Q9UHI6 824 aaKnown RBP7.15□□□□□ -1.26
SPG11-221ENST00000560299 FAM184BQ9ULE4 1060 aa7.15□□□□□ -1.26
SPG11-221ENST00000560299 PPME1Q9Y570 386 aa7.15□□□□□ -1.26
SPG11-221ENST00000560299 COL4A3BPQ9Y5P4 624 aa7.15□□□□□ -1.26
SPG11-221ENST00000560299 IGKV6D-21A0A0A0MT36 114 aa7.14□□□□□ -1.27
SPG11-221ENST00000560299 MYMKA6NI61 221 aa7.14□□□□□ -1.27
SPG11-221ENST00000560299 ZSWIM8A7E2V4 1837 aa7.14□□□□□ -1.27
SPG11-221ENST00000560299 GOLGA6L19H0YKK7 550 aa7.14□□□□□ -1.27
SPG11-221ENST00000560299 DNM1LO00429 736 aa7.14□□□□□ -1.27
SPG11-221ENST00000560299 PPFIA4O75335 1185 aa7.14□□□□□ -1.27
SPG11-221ENST00000560299 RHOBTB3O94955 611 aa7.14□□□□□ -1.27
SPG11-221ENST00000560299 ZNF865P0CJ78 1059 aaPredicted RBP7.14□□□□□ -1.27
SPG11-221ENST00000560299 COL6A1P12109 1028 aa7.14□□□□□ -1.27
SPG11-221ENST00000560299 AKR1A1P14550 325 aa7.14□□□□□ -1.27
SPG11-221ENST00000560299 GAP43P17677 238 aa7.14□□□□□ -1.27
SPG11-221ENST00000560299 CYP11B2P19099 503 aa7.14□□□□□ -1.27
SPG11-221ENST00000560299 TCF7P36402 384 aaPredicted RBP7.14□□□□□ -1.27
SPG11-221ENST00000560299 ADCYAP1R1P41586 468 aa7.14□□□□□ -1.27
SPG11-221ENST00000560299 ZNF165P49910 485 aa7.14□□□□□ -1.27
SPG11-221ENST00000560299 MRE11P49959 708 aa7.14□□□□□ -1.27
SPG11-221ENST00000560299 SLC12A3P55017 1021 aa7.14□□□□□ -1.27
SPG11-221ENST00000560299 PSMC6P62333 389 aa7.14□□□□□ -1.27
SPG11-221ENST00000560299 MORC3Q14149 939 aa7.14□□□□□ -1.27
SPG11-221ENST00000560299 DGKDQ16760 1214 aa7.14□□□□□ -1.27
SPG11-221ENST00000560299 UVSSAQ2YD98 709 aa7.14□□□□□ -1.27
SPG11-221ENST00000560299 ANO6Q4KMQ2 910 aa7.14□□□□□ -1.27
SPG11-221ENST00000560299 XKR9Q5GH70 373 aa7.14□□□□□ -1.27
SPG11-221ENST00000560299 ZNF658Q5TYW1 1059 aaPredicted RBP7.14□□□□□ -1.27
SPG11-221ENST00000560299 PDE4DIPQ5VU43 2346 aa7.14□□□□□ -1.27
SPG11-221ENST00000560299 FAM43BQ6ZT52 329 aaPredicted RBP7.14□□□□□ -1.27
SPG11-221ENST00000560299 STXBP4Q6ZWJ1 553 aa7.14□□□□□ -1.27
SPG11-221ENST00000560299 DYMQ7RTS9 669 aa7.14□□□□□ -1.27
SPG11-221ENST00000560299 PLPPR4Q7Z2D5 763 aa7.14□□□□□ -1.27
SPG11-221ENST00000560299 KCNK18Q7Z418 384 aa7.14□□□□□ -1.27
SPG11-221ENST00000560299 OR6J1Q8NGC5 347 aa7.14□□□□□ -1.27
SPG11-221ENST00000560299 PPTC7Q8NI37 304 aa7.14□□□□□ -1.27
SPG11-221ENST00000560299 FAM200AQ8TCP9 573 aa7.14□□□□□ -1.27
SPG11-221ENST00000560299 AFAP1L1Q8TED9 768 aa7.14□□□□□ -1.27
SPG11-221ENST00000560299 PIGOQ8TEQ8 1089 aa7.14□□□□□ -1.27
SPG11-221ENST00000560299 SH3TC2Q8TF17 1288 aa7.14□□□□□ -1.27
SPG11-221ENST00000560299 U2AF1L4Q8WU68 220 aaKnown RBP7.14□□□□□ -1.27
SPG11-221ENST00000560299 ERCC4Q92889 916 aaPredicted RBP7.14□□□□□ -1.27
SPG11-221ENST00000560299 CEP170P1Q96L14 293 aa7.14□□□□□ -1.27
SPG11-221ENST00000560299 GPR20Q99678 358 aa7.14□□□□□ -1.27
SPG11-221ENST00000560299 MTRQ99707 1265 aa7.14□□□□□ -1.27
SPG11-221ENST00000560299 FUCA2Q9BTY2 467 aa7.14□□□□□ -1.27
SPG11-221ENST00000560299 AP5M1Q9H0R1 490 aa7.14□□□□□ -1.27
SPG11-221ENST00000560299 RNF208Q9H0X6 261 aa7.14□□□□□ -1.27
SPG11-221ENST00000560299 UPF3AQ9H1J1 476 aaKnown RBP7.14□□□□□ -1.27
SPG11-221ENST00000560299 SPC25Q9HBM1 224 aa7.14□□□□□ -1.27
SPG11-221ENST00000560299 PDGFCQ9NRA1 345 aa7.14□□□□□ -1.27
SPG11-221ENST00000560299 PANK4Q9NVE7 773 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms