RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 DDX19AQ9NUU7 478 aaKnown RBP11.25□□□□□ -0.61
USP3-216ENST00000559873 TMEM39AQ9NV64 488 aa11.25□□□□□ -0.61
USP3-216ENST00000559873 SETD4Q9NVD3 440 aa11.25□□□□□ -0.61
USP3-216ENST00000559873 FAM13BQ9NYF5 915 aa11.25□□□□□ -0.61
USP3-216ENST00000559873 RCOR1Q9UKL0 485 aa11.25□□□□□ -0.61
USP3-216ENST00000559873 DNM3Q9UQ16 869 aa11.25□□□□□ -0.61
USP3-216ENST00000559873 MBLAC1A4D2B0 266 aaPredicted RBP11.24□□□□□ -0.61
USP3-216ENST00000559873 ARHGEF35A5YM69 484 aa11.24□□□□□ -0.61
USP3-216ENST00000559873 PP2D1A8MPX8 630 aa11.24□□□□□ -0.61
USP3-216ENST00000559873 M0QZ92 97 aa11.24□□□□□ -0.61
USP3-216ENST00000559873 DGAT1O75907 488 aa11.24□□□□□ -0.61
USP3-216ENST00000559873 CD4P01730 458 aa11.24□□□□□ -0.61
USP3-216ENST00000559873 SPATA31C1P0DKV0 1188 aa11.24□□□□□ -0.61
USP3-216ENST00000559873 CYP2C9P11712 490 aa11.24□□□□□ -0.61
USP3-216ENST00000559873 ATP4AP20648 1035 aa11.24□□□□□ -0.61
USP3-216ENST00000559873 DNM2P50570 870 aa11.24□□□□□ -0.61
USP3-216ENST00000559873 HYIQ5T013 277 aa11.24□□□□□ -0.61
USP3-216ENST00000559873 CCDC73Q6ZRK6 1079 aa11.24□□□□□ -0.61
USP3-216ENST00000559873 ANO5Q75V66 913 aa11.24□□□□□ -0.61
USP3-216ENST00000559873 SERINC5Q86VE9 423 aa11.24□□□□□ -0.61
USP3-216ENST00000559873 C7orf61Q8IZ16 206 aa11.24□□□□□ -0.61
USP3-216ENST00000559873 ZNF710Q8N1W2 664 aa11.24□□□□□ -0.61
USP3-216ENST00000559873 SYMPKQ92797 1274 aaKnown RBP11.24□□□□□ -0.61
USP3-216ENST00000559873 CCSER1Q9C0I3 900 aa11.24□□□□□ -0.61
USP3-216ENST00000559873 PDLIM7Q9NR12 457 aa11.24□□□□□ -0.61
USP3-216ENST00000559873 DBR1Q9UK59 544 aaKnown RBP11.24□□□□□ -0.61
USP3-216ENST00000559873 KIAA1024Q9UPX6 916 aa11.24□□□□□ -0.61
USP3-216ENST00000559873 LOXHD1Q8IVV2 1947 aa11.23□□□□□ -0.61
USP3-216ENST00000559873 KAT6AQ92794 2004 aa11.23□□□□□ -0.61
USP3-216ENST00000559873 SMIM35A0A1B0GVV1 85 aa11.23□□□□□ -0.61
USP3-216ENST00000559873 PITPNM1O00562 1244 aa11.23□□□□□ -0.61
USP3-216ENST00000559873 TREHO43280 583 aa11.23□□□□□ -0.61
USP3-216ENST00000559873 MAFO75444 373 aaPredicted RBP11.23□□□□□ -0.61
USP3-216ENST00000559873 C22orf31O95567 290 aa11.23□□□□□ -0.61
USP3-216ENST00000559873 CDC25AP30304 524 aa11.23□□□□□ -0.61
USP3-216ENST00000559873 RARRES1P49788 294 aa11.23□□□□□ -0.61
USP3-216ENST00000559873 MLLT1Q03111 559 aaPredicted RBP11.23□□□□□ -0.61
USP3-216ENST00000559873 GRIN1Q05586 938 aa11.23□□□□□ -0.61
USP3-216ENST00000559873 FAAP100Q0VG06 881 aa11.23□□□□□ -0.61
USP3-216ENST00000559873 EMC2Q15006 297 aa11.23□□□□□ -0.61
USP3-216ENST00000559873 TMEM119Q4V9L6 283 aa11.23□□□□□ -0.61
USP3-216ENST00000559873 PLA2G4FQ68DD2 849 aa11.23□□□□□ -0.61
USP3-216ENST00000559873 ADALQ6DHV7 355 aa11.23□□□□□ -0.61
USP3-216ENST00000559873 MTHFD1LQ6UB35 978 aa11.23□□□□□ -0.61
USP3-216ENST00000559873 METTL13Q8N6R0 699 aa11.23□□□□□ -0.61
USP3-216ENST00000559873 MCPH1Q8NEM0 835 aa11.23□□□□□ -0.61
USP3-216ENST00000559873 TCP11Q8WWU5 503 aa11.23□□□□□ -0.61
USP3-216ENST00000559873 CLIC6Q96NY7 704 aa11.23□□□□□ -0.61
USP3-216ENST00000559873 GBP4Q96PP9 640 aa11.23□□□□□ -0.61
USP3-216ENST00000559873 TRPV6Q9H1D0 765 aa11.23□□□□□ -0.61
USP3-216ENST00000559873 HIPK3Q9H422 1215 aa11.23□□□□□ -0.61
USP3-216ENST00000559873 ATP6V0A4Q9HBG4 840 aa11.23□□□□□ -0.61
USP3-216ENST00000559873 WRAP73Q9P2S5 460 aaPredicted RBP11.23□□□□□ -0.61
USP3-216ENST00000559873 STK17AQ9UEE5 414 aa11.23□□□□□ -0.61
USP3-216ENST00000559873 TBX21Q9UL17 535 aa11.23□□□□□ -0.61
USP3-216ENST00000559873 PCDHA7Q9UN72 937 aa11.23□□□□□ -0.61
USP3-216ENST00000559873 PCDHA2Q9Y5H9 948 aa11.23□□□□□ -0.61
USP3-216ENST00000559873 ZBTB42B2RXF5 422 aa11.22□□□□□ -0.61
USP3-216ENST00000559873 KIAA0355O15063 1070 aa11.22□□□□□ -0.61
USP3-216ENST00000559873 STBD1O95210 358 aa11.22□□□□□ -0.61
USP3-216ENST00000559873 PARNO95453 639 aaKnown RBP11.22□□□□□ -0.61
USP3-216ENST00000559873 EYA4O95677 639 aa11.22□□□□□ -0.61
USP3-216ENST00000559873 RAG1P15918 1043 aa11.22□□□□□ -0.61
USP3-216ENST00000559873 KLRC1P26715 233 aa11.22□□□□□ -0.61
USP3-216ENST00000559873 STAT6P42226 847 aa11.22□□□□□ -0.61
USP3-216ENST00000559873 ADAM17P78536 824 aa11.22□□□□□ -0.61
USP3-216ENST00000559873 CDC42EP1Q00587 391 aa11.22□□□□□ -0.61
USP3-216ENST00000559873 RBL2Q08999 1139 aa11.22□□□□□ -0.61
USP3-216ENST00000559873 KARSQ15046 597 aaKnown RBP11.22□□□□□ -0.61
USP3-216ENST00000559873 TARBP2Q15633 366 aaKnown RBP11.22□□□□□ -0.61
USP3-216ENST00000559873 WDR81Q562E7 1941 aa11.22□□□□□ -0.61
USP3-216ENST00000559873 MARCH8Q5T0T0 291 aa11.22□□□□□ -0.61
USP3-216ENST00000559873 PDE4DIPQ5VU43 2346 aa11.22□□□□□ -0.61
USP3-216ENST00000559873 RPAINQ86UA6 219 aa11.22□□□□□ -0.61
USP3-216ENST00000559873 NME8Q8N427 588 aa11.22□□□□□ -0.61
USP3-216ENST00000559873 PIGOQ8TEQ8 1089 aa11.22□□□□□ -0.61
USP3-216ENST00000559873 PPP1R13LQ8WUF5 828 aa11.22□□□□□ -0.61
USP3-216ENST00000559873 TRAPPC12Q8WVT3 735 aa11.22□□□□□ -0.61
USP3-216ENST00000559873 CCDC34Q96HJ3 373 aa11.22□□□□□ -0.61
USP3-216ENST00000559873 MTRQ99707 1265 aa11.22□□□□□ -0.61
USP3-216ENST00000559873 MMTAG2Q9BU76 263 aaKnown RBP11.22□□□□□ -0.61
USP3-216ENST00000559873 BHMT2Q9H2M3 363 aa11.22□□□□□ -0.61
USP3-216ENST00000559873 KCND2Q9NZV8 630 aa11.22□□□□□ -0.61
USP3-216ENST00000559873 A0A1W2PQ27 194 aa11.21□□□□□ -0.61
USP3-216ENST00000559873 A0A1W2PQ64 194 aa11.21□□□□□ -0.61
USP3-216ENST00000559873 A0A1W2PQD8 194 aa11.21□□□□□ -0.61
USP3-216ENST00000559873 USO1O60763 962 aaKnown RBP11.21□□□□□ -0.61
USP3-216ENST00000559873 SSBP05455 408 aaKnown RBP eCLIP11.21□□□□□ -0.61
USP3-216ENST00000559873 SELPP16109 830 aa11.21□□□□□ -0.61
USP3-216ENST00000559873 PLCG1P19174 1290 aa11.21□□□□□ -0.61
USP3-216ENST00000559873 RFC2P35250 354 aa11.21□□□□□ -0.61
USP3-216ENST00000559873 THPOP40225 353 aa11.21□□□□□ -0.61
USP3-216ENST00000559873 NPEPPSP55786 919 aa11.21□□□□□ -0.61
USP3-216ENST00000559873 GRB10Q13322 594 aa11.21□□□□□ -0.61
USP3-216ENST00000559873 SPECC1Q5M775 1068 aa11.21□□□□□ -0.61
USP3-216ENST00000559873 AXDND1Q5T1B0 1012 aaPredicted RBP11.21□□□□□ -0.61
USP3-216ENST00000559873 IER5Q5VY09 327 aa11.21□□□□□ -0.61
USP3-216ENST00000559873 RRAGBQ5VZM2 374 aa11.21□□□□□ -0.61
USP3-216ENST00000559873 RESP18Q5W5W9 173 aa11.21□□□□□ -0.61
USP3-216ENST00000559873 PADI6Q6TGC4 694 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms