RNA–Protein interactions for RNA: ENST00000558910.2

TPM1-216, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 1,232 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-216ENST00000558910 SETQ01105 290 aaPredicted RBP13.59□□□□□ -0.23
TPM1-216ENST00000558910 NR5A1Q13285 461 aa13.59□□□□□ -0.23
TPM1-216ENST00000558910 GRIN2CQ14957 1233 aa13.59□□□□□ -0.23
TPM1-216ENST00000558910 NONOQ15233 471 aaKnown RBP eCLIP13.59□□□□□ -0.23
TPM1-216ENST00000558910 RASIP1Q5U651 963 aa13.59□□□□□ -0.23
TPM1-216ENST00000558910 FAM160B1Q5W0V3 765 aa13.59□□□□□ -0.23
TPM1-216ENST00000558910 MCTP2Q6DN12 878 aa13.59□□□□□ -0.23
TPM1-216ENST00000558910 MIS18BP1Q6P0N0 1132 aa13.59□□□□□ -0.23
TPM1-216ENST00000558910 TRAF7Q6Q0C0 670 aa13.59□□□□□ -0.23
TPM1-216ENST00000558910 NSUN7Q8NE18 718 aaKnown RBP13.59□□□□□ -0.23
TPM1-216ENST00000558910 DBF4BQ8NFT6 615 aa13.59□□□□□ -0.23
TPM1-216ENST00000558910 TET1Q8NFU7 2136 aa13.59□□□□□ -0.23
TPM1-216ENST00000558910 PHF20Q9BVI0 1012 aa13.59□□□□□ -0.23
TPM1-216ENST00000558910 PRDM12Q9H4Q4 367 aa13.59□□□□□ -0.23
TPM1-216ENST00000558910 ZNF576Q9H609 170 aa13.59□□□□□ -0.23
TPM1-216ENST00000558910 GABBR1Q9UBS5 961 aa13.59□□□□□ -0.23
TPM1-216ENST00000558910 NRCAMQ92823 1304 aa13.59□□□□□ -0.23
TPM1-216ENST00000558910 COL6A3P12111 3177 aa13.59□□□□□ -0.23
TPM1-216ENST00000558910 CCNT1O60563 726 aaKnown RBP13.58□□□□□ -0.24
TPM1-216ENST00000558910 LGR5O75473 907 aa13.58□□□□□ -0.24
TPM1-216ENST00000558910 UPP2O95045 317 aa13.58□□□□□ -0.24
TPM1-216ENST00000558910 PFKMP08237 780 aa13.58□□□□□ -0.24
TPM1-216ENST00000558910 GHRP10912 638 aa13.58□□□□□ -0.24
TPM1-216ENST00000558910 ST3GAL1Q11201 340 aa13.58□□□□□ -0.24
TPM1-216ENST00000558910 NPY5RQ15761 445 aa13.58□□□□□ -0.24
TPM1-216ENST00000558910 EARS2Q5JPH6 523 aaKnown RBP13.58□□□□□ -0.24
TPM1-216ENST00000558910 LRCH2Q5VUJ6 765 aa13.58□□□□□ -0.24
TPM1-216ENST00000558910 CNKSR3Q6P9H4 555 aa13.58□□□□□ -0.24
TPM1-216ENST00000558910 ABHD15Q6UXT9 468 aa13.58□□□□□ -0.24
TPM1-216ENST00000558910 NIPA1Q7RTP0 329 aa13.58□□□□□ -0.24
TPM1-216ENST00000558910 KRT25Q7Z3Z0 450 aa13.58□□□□□ -0.24
TPM1-216ENST00000558910 CRYGNQ8WXF5 182 aa13.58□□□□□ -0.24
TPM1-216ENST00000558910 TATDN2Q93075 761 aa13.58□□□□□ -0.24
TPM1-216ENST00000558910 LENG9Q96B70 501 aa13.58□□□□□ -0.24
TPM1-216ENST00000558910 SLC28A3Q9HAS3 691 aa13.58□□□□□ -0.24
TPM1-216ENST00000558910 SLC37A4O43826 429 aa13.57□□□□□ -0.24
TPM1-216ENST00000558910 CA3P07451 260 aa13.57□□□□□ -0.24
TPM1-216ENST00000558910 PSAPP07602 524 aa13.57□□□□□ -0.24
TPM1-216ENST00000558910 IGFBP4P22692 258 aa13.57□□□□□ -0.24
TPM1-216ENST00000558910 KRT2P35908 639 aa13.57□□□□□ -0.24
TPM1-216ENST00000558910 WDR5P61964 334 aaKnown RBP13.57□□□□□ -0.24
TPM1-216ENST00000558910 TRIM29Q14134 588 aa13.57□□□□□ -0.24
TPM1-216ENST00000558910 RAB30Q15771 203 aa13.57□□□□□ -0.24
TPM1-216ENST00000558910 MARCH8Q5T0T0 291 aa13.57□□□□□ -0.24
TPM1-216ENST00000558910 PPP2R2DQ66LE6 453 aa13.57□□□□□ -0.24
TPM1-216ENST00000558910 LIN28BQ6ZN17 250 aaKnown RBP eCLIP13.57□□□□□ -0.24
TPM1-216ENST00000558910 MYOCDQ8IZQ8 938 aa13.57□□□□□ -0.24
TPM1-216ENST00000558910 MICALL1Q8N3F8 863 aa13.57□□□□□ -0.24
TPM1-216ENST00000558910 WASF1Q92558 559 aa13.57□□□□□ -0.24
TPM1-216ENST00000558910 ZNF668Q96K58 619 aaPredicted RBP13.57□□□□□ -0.24
TPM1-216ENST00000558910 SH2D3AQ9BRG2 576 aa13.57□□□□□ -0.24
TPM1-216ENST00000558910 TEKT3Q9BXF9 490 aa13.57□□□□□ -0.24
TPM1-216ENST00000558910 UNC45AQ9H3U1 944 aa13.57□□□□□ -0.24
TPM1-216ENST00000558910 BRMS1Q9HCU9 246 aa13.57□□□□□ -0.24
TPM1-216ENST00000558910 TBC1D22BQ9NU19 505 aa13.57□□□□□ -0.24
TPM1-216ENST00000558910 DDX25Q9UHL0 483 aaKnown RBP13.57□□□□□ -0.24
TPM1-216ENST00000558910 MTUS1Q9ULD2 1270 aa13.57□□□□□ -0.24
TPM1-216ENST00000558910 LIMCH1Q9UPQ0 1083 aa13.57□□□□□ -0.24
TPM1-216ENST00000558910 EMSYQ7Z589 1322 aa13.57□□□□□ -0.24
TPM1-216ENST00000558910 STK36Q9NRP7 1315 aa13.57□□□□□ -0.24
TPM1-216ENST00000558910 CUL9Q8IWT3 2517 aa13.56□□□□□ -0.24
TPM1-216ENST00000558910 RFXAPO00287 272 aa13.56□□□□□ -0.24
TPM1-216ENST00000558910 TLL1O43897 1013 aa13.56□□□□□ -0.24
TPM1-216ENST00000558910 CHRNA1P02708 482 aa13.56□□□□□ -0.24
TPM1-216ENST00000558910 FOSL2P15408 326 aa13.56□□□□□ -0.24
TPM1-216ENST00000558910 CIITAP33076 1130 aa13.56□□□□□ -0.24
TPM1-216ENST00000558910 USP11P51784 963 aa13.56□□□□□ -0.24
TPM1-216ENST00000558910 IKBKEQ14164 716 aa13.56□□□□□ -0.24
TPM1-216ENST00000558910 CCDC85BQ15834 202 aaPredicted RBP13.56□□□□□ -0.24
TPM1-216ENST00000558910 NUDT18Q6ZVK8 323 aa13.56□□□□□ -0.24
TPM1-216ENST00000558910 MIER3Q7Z3K6 550 aa13.56□□□□□ -0.24
TPM1-216ENST00000558910 SPRED2Q7Z698 418 aa13.56□□□□□ -0.24
TPM1-216ENST00000558910 RSPH3Q86UC2 560 aa13.56□□□□□ -0.24
TPM1-216ENST00000558910 HERC6Q8IVU3 1022 aa13.56□□□□□ -0.24
TPM1-216ENST00000558910 METTL13Q8N6R0 699 aa13.56□□□□□ -0.24
TPM1-216ENST00000558910 TTC13Q8NBP0 860 aa13.56□□□□□ -0.24
TPM1-216ENST00000558910 DAGLBQ8NCG7 672 aa13.56□□□□□ -0.24
TPM1-216ENST00000558910 KIF2CQ99661 725 aa13.56□□□□□ -0.24
TPM1-216ENST00000558910 UPF2Q9HAU5 1272 aaKnown RBP13.56□□□□□ -0.24
TPM1-216ENST00000558910 DISC1Q9NRI5 854 aa13.56□□□□□ -0.24
TPM1-216ENST00000558910 PCDHA10Q9Y5I2 948 aa13.56□□□□□ -0.24
TPM1-216ENST00000558910 CDY2AQ9Y6F7 541 aa13.56□□□□□ -0.24
TPM1-216ENST00000558910 TANC1Q9C0D5 1861 aa13.55□□□□□ -0.24
TPM1-216ENST00000558910 CDH23Q9H251 3354 aa13.55□□□□□ -0.24
TPM1-216ENST00000558910 TMEM150BA6NC51 233 aa13.55□□□□□ -0.24
TPM1-216ENST00000558910 RRN3P2A6NIE6 340 aa13.55□□□□□ -0.24
TPM1-216ENST00000558910 BTBD18B2RXH4 712 aa13.55□□□□□ -0.24
TPM1-216ENST00000558910 M0R2N6 131 aa13.55□□□□□ -0.24
TPM1-216ENST00000558910 ARHGEF15O94989 841 aa13.55□□□□□ -0.24
TPM1-216ENST00000558910 ATG7O95352 703 aa13.55□□□□□ -0.24
TPM1-216ENST00000558910 CXCL10P02778 98 aa13.55□□□□□ -0.24
TPM1-216ENST00000558910 ATP4AP20648 1035 aa13.55□□□□□ -0.24
TPM1-216ENST00000558910 KLRC1P26715 233 aa13.55□□□□□ -0.24
TPM1-216ENST00000558910 HOXC8P31273 242 aa13.55□□□□□ -0.24
TPM1-216ENST00000558910 ADAM17P78536 824 aa13.55□□□□□ -0.24
TPM1-216ENST00000558910 KRT76Q01546 638 aa13.55□□□□□ -0.24
TPM1-216ENST00000558910 RBL2Q08999 1139 aa13.55□□□□□ -0.24
TPM1-216ENST00000558910 UGCGQ16739 394 aa13.55□□□□□ -0.24
TPM1-216ENST00000558910 KRT40Q6A162 431 aa13.55□□□□□ -0.24
TPM1-216ENST00000558910 GALNT17Q6IS24 598 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms