RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 UBOX5O94941 541 aa12.31□□□□□ -0.44
LDLR-208ENST00000558518 BAG3O95817 575 aa12.31□□□□□ -0.44
LDLR-208ENST00000558518 ELF3P78545 371 aaPredicted RBP12.31□□□□□ -0.44
LDLR-208ENST00000558518 ITIH3Q06033 890 aa12.31□□□□□ -0.44
LDLR-208ENST00000558518 ASTE1Q2TB18 679 aaPredicted RBP12.31□□□□□ -0.44
LDLR-208ENST00000558518 SFR1Q86XK3 245 aa12.31□□□□□ -0.44
LDLR-208ENST00000558518 SRP68Q9UHB9 627 aaKnown RBP12.31□□□□□ -0.44
LDLR-208ENST00000558518 PPP1R9AQ9ULJ8 1098 aa12.31□□□□□ -0.44
LDLR-208ENST00000558518 FAM196BA6NMK8 535 aa12.3□□□□□ -0.44
LDLR-208ENST00000558518 LAD1O00515 517 aa12.3□□□□□ -0.44
LDLR-208ENST00000558518 TRIM49P0CI25 452 aa12.3□□□□□ -0.44
LDLR-208ENST00000558518 TRIM49CP0CI26 452 aa12.3□□□□□ -0.44
LDLR-208ENST00000558518 GCFC2P16383 781 aaKnown RBP12.3□□□□□ -0.44
LDLR-208ENST00000558518 PPP1R2P41236 205 aa12.3□□□□□ -0.44
LDLR-208ENST00000558518 CDK8P49336 464 aa12.3□□□□□ -0.44
LDLR-208ENST00000558518 NSMFQ6X4W1 530 aa12.3□□□□□ -0.44
LDLR-208ENST00000558518 TPCN2Q8NHX9 752 aa12.3□□□□□ -0.44
LDLR-208ENST00000558518 PKD2L1Q9P0L9 805 aa12.3□□□□□ -0.44
LDLR-208ENST00000558518 SLC12A6Q9UHW9 1150 aa12.3□□□□□ -0.44
LDLR-208ENST00000558518 SPEF2Q9C093 1822 aa12.3□□□□□ -0.44
LDLR-208ENST00000558518 TCP11X1B4DZS4 312 aa12.3□□□□□ -0.44
LDLR-208ENST00000558518 PDHA1P08559 390 aa12.3□□□□□ -0.44
LDLR-208ENST00000558518 MYBP10242 640 aa12.3□□□□□ -0.44
LDLR-208ENST00000558518 HNRNPH3P31942 346 aaKnown RBP12.3□□□□□ -0.44
LDLR-208ENST00000558518 SLC8A1P32418 973 aa12.3□□□□□ -0.44
LDLR-208ENST00000558518 PMS2P54278 862 aa12.3□□□□□ -0.44
LDLR-208ENST00000558518 BIRC3Q13489 604 aa12.3□□□□□ -0.44
LDLR-208ENST00000558518 HOOK3Q86VS8 718 aa12.3□□□□□ -0.44
LDLR-208ENST00000558518 NEK9Q8TD19 979 aa12.3□□□□□ -0.44
LDLR-208ENST00000558518 PIGOQ8TEQ8 1089 aa12.3□□□□□ -0.44
LDLR-208ENST00000558518 SPIRE2Q8WWL2 714 aa12.3□□□□□ -0.44
LDLR-208ENST00000558518 TATDN2Q93075 761 aa12.3□□□□□ -0.44
LDLR-208ENST00000558518 KIF9Q9HAQ2 790 aa12.3□□□□□ -0.44
LDLR-208ENST00000558518 ERVK-5Q9HDB9 667 aa12.3□□□□□ -0.44
LDLR-208ENST00000558518 CREB1P16220 341 aa12.3□□□□□ -0.44
LDLR-208ENST00000558518 ZNF76P36508 570 aa12.3□□□□□ -0.44
LDLR-208ENST00000558518 PSMC6P62333 389 aa12.3□□□□□ -0.44
LDLR-208ENST00000558518 SLC35G2Q8TBE7 412 aa12.3□□□□□ -0.44
LDLR-208ENST00000558518 ECT2Q9H8V3 914 aa12.3□□□□□ -0.44
LDLR-208ENST00000558518 RIC8AQ9NPQ8 531 aa12.3□□□□□ -0.44
LDLR-208ENST00000558518 SH3GLB2Q9NR46 395 aa12.3□□□□□ -0.44
LDLR-208ENST00000558518 AJAP1Q9UKB5 411 aaPredicted RBP12.3□□□□□ -0.44
LDLR-208ENST00000558518 IGF2BP3O00425 579 aaKnown RBP eCLIP12.29□□□□□ -0.44
LDLR-208ENST00000558518 NTSR2O95665 410 aa12.29□□□□□ -0.44
LDLR-208ENST00000558518 TNFAIP3P21580 790 aa12.29□□□□□ -0.44
LDLR-208ENST00000558518 DRD4P21917 467 aa12.29□□□□□ -0.44
LDLR-208ENST00000558518 BTDP43251 543 aa12.29□□□□□ -0.44
LDLR-208ENST00000558518 UBXN2AP68543 259 aa12.29□□□□□ -0.44
LDLR-208ENST00000558518 DPP8Q6V1X1 898 aaPredicted RBP12.29□□□□□ -0.44
LDLR-208ENST00000558518 LMBR1Q8WVP7 490 aa12.29□□□□□ -0.44
LDLR-208ENST00000558518 CUL5Q93034 780 aa12.29□□□□□ -0.44
LDLR-208ENST00000558518 PBKQ96KB5 322 aa12.29□□□□□ -0.44
LDLR-208ENST00000558518 BTBD6Q96KE9 485 aa12.29□□□□□ -0.44
LDLR-208ENST00000558518 POP1Q99575 1024 aaKnown RBP12.29□□□□□ -0.44
LDLR-208ENST00000558518 PNMA3Q9UL41 463 aa12.29□□□□□ -0.44
LDLR-208ENST00000558518 LOC102724428A0A0B4J2F2 783 aa12.29□□□□□ -0.44
LDLR-208ENST00000558518 PVALEFA0A1B0GWK0 134 aa12.29□□□□□ -0.44
LDLR-208ENST00000558518 ERVV-1B6SEH8 477 aa12.29□□□□□ -0.44
LDLR-208ENST00000558518 AFPP02771 609 aaKnown RBP12.29□□□□□ -0.44
LDLR-208ENST00000558518 RASA1P20936 1047 aa12.29□□□□□ -0.44
LDLR-208ENST00000558518 PRPHP41219 470 aa12.29□□□□□ -0.44
LDLR-208ENST00000558518 STAT1P42224 750 aa12.29□□□□□ -0.44
LDLR-208ENST00000558518 SIK1P57059 783 aa12.29□□□□□ -0.44
LDLR-208ENST00000558518 RNASELQ05823 741 aaKnown RBP12.29□□□□□ -0.44
LDLR-208ENST00000558518 DDR1Q08345 913 aa12.29□□□□□ -0.44
LDLR-208ENST00000558518 BRINP3Q76B58 766 aa12.29□□□□□ -0.44
LDLR-208ENST00000558518 TAB3Q8N5C8 712 aaPredicted RBP12.29□□□□□ -0.44
LDLR-208ENST00000558518 AGAP11Q8TF27 550 aa12.29□□□□□ -0.44
LDLR-208ENST00000558518 ZNF526Q8TF50 670 aaPredicted RBP12.29□□□□□ -0.44
LDLR-208ENST00000558518 SCFD1Q8WVM8 642 aa12.29□□□□□ -0.44
LDLR-208ENST00000558518 MXD3Q9BW11 206 aa12.29□□□□□ -0.44
LDLR-208ENST00000558518 CTNNAL1Q9UBT7 734 aa12.29□□□□□ -0.44
LDLR-208ENST00000558518 STK17AQ9UEE5 414 aa12.29□□□□□ -0.44
LDLR-208ENST00000558518 PCDHGC5Q9Y5F6 944 aa12.29□□□□□ -0.44
LDLR-208ENST00000558518 NID2Q14112 1375 aa12.29□□□□□ -0.44
LDLR-208ENST00000558518 SIPA1L3O60292 1781 aaPredicted RBP12.29□□□□□ -0.44
LDLR-208ENST00000558518 TBCAO75347 108 aaKnown RBP12.29□□□□□ -0.44
LDLR-208ENST00000558518 ECHS1P30084 290 aa12.29□□□□□ -0.44
LDLR-208ENST00000558518 ZNF449Q6P9G9 518 aa12.29□□□□□ -0.44
LDLR-208ENST00000558518 RBM46Q8TBY0 533 aaKnown RBP12.29□□□□□ -0.44
LDLR-208ENST00000558518 MAGEF1Q9HAY2 307 aa12.29□□□□□ -0.44
LDLR-208ENST00000558518 ZNF804BA4D1E1 1349 aa12.28□□□□□ -0.44
LDLR-208ENST00000558518 KCNQ2O43526 872 aa12.28□□□□□ -0.44
LDLR-208ENST00000558518 EVI5O60447 810 aa12.28□□□□□ -0.44
LDLR-208ENST00000558518 MARCKSL1P49006 195 aa12.28□□□□□ -0.44
LDLR-208ENST00000558518 BIRC2Q13490 618 aa12.28□□□□□ -0.44
LDLR-208ENST00000558518 NKX1-1Q15270 411 aaPredicted RBP12.28□□□□□ -0.44
LDLR-208ENST00000558518 C6orf89Q6UWU4 347 aa12.28□□□□□ -0.44
LDLR-208ENST00000558518 TRPM8Q7Z2W7 1104 aa12.28□□□□□ -0.44
LDLR-208ENST00000558518 SH2D3AQ9BRG2 576 aa12.28□□□□□ -0.44
LDLR-208ENST00000558518 NUCKS1Q9H1E3 243 aaKnown RBP12.28□□□□□ -0.44
LDLR-208ENST00000558518 TAS2R14Q9NYV8 317 aa12.28□□□□□ -0.44
LDLR-208ENST00000558518 ASIC3Q9UHC3 531 aa12.28□□□□□ -0.44
LDLR-208ENST00000558518 ZNF652Q9Y2D9 606 aa12.28□□□□□ -0.44
LDLR-208ENST00000558518 COL1A1P02452 1464 aaPredicted RBP12.28□□□□□ -0.44
LDLR-208ENST00000558518 CLGNO14967 610 aa12.28□□□□□ -0.44
LDLR-208ENST00000558518 SPOPO43791 374 aa12.28□□□□□ -0.44
LDLR-208ENST00000558518 RFC4P35249 363 aa12.28□□□□□ -0.44
LDLR-208ENST00000558518 MTM1Q13496 603 aa12.28□□□□□ -0.44
LDLR-208ENST00000558518 ITPK1Q13572 414 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms