RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 ERMNQ8TAM6 284 aa9.73□□□□□ -0.85
USP3-208ENST00000558285 MBOAT7Q96N66 472 aa9.73□□□□□ -0.85
USP3-208ENST00000558285 SCLT1Q96NL6 688 aa9.73□□□□□ -0.85
USP3-208ENST00000558285 NAP1L5Q96NT1 182 aaPredicted RBP9.73□□□□□ -0.85
USP3-208ENST00000558285 IFIH1Q9BYX4 1025 aaKnown RBP9.73□□□□□ -0.85
USP3-208ENST00000558285 TSPYL2Q9H2G4 693 aaPredicted RBP9.73□□□□□ -0.85
USP3-208ENST00000558285 FOXP1Q9H334 677 aaPredicted RBP9.73□□□□□ -0.85
USP3-208ENST00000558285 RRAGDQ9NQL2 400 aaPredicted RBP9.73□□□□□ -0.85
USP3-208ENST00000558285 MAFBQ9Y5Q3 323 aaPredicted RBP9.73□□□□□ -0.85
USP3-208ENST00000558285 TRPV2Q9Y5S1 764 aa9.73□□□□□ -0.85
USP3-208ENST00000558285 MYH7BA7E2Y1 1941 aa9.73□□□□□ -0.85
USP3-208ENST00000558285 M0R2N6 131 aa9.73□□□□□ -0.85
USP3-208ENST00000558285 DHX15O43143 795 aaKnown RBP9.73□□□□□ -0.85
USP3-208ENST00000558285 TLL1O43897 1013 aa9.73□□□□□ -0.85
USP3-208ENST00000558285 NEMFO60524 1076 aa9.73□□□□□ -0.85
USP3-208ENST00000558285 CCNE2O96020 404 aa9.73□□□□□ -0.85
USP3-208ENST00000558285 OATP04181 439 aa9.73□□□□□ -0.85
USP3-208ENST00000558285 PDCP20941 246 aa9.73□□□□□ -0.85
USP3-208ENST00000558285 TBC1D8BQ0IIM8 1120 aa9.73□□□□□ -0.85
USP3-208ENST00000558285 CALCRLQ16602 461 aa9.73□□□□□ -0.85
USP3-208ENST00000558285 MTHFD1LQ6UB35 978 aa9.73□□□□□ -0.85
USP3-208ENST00000558285 C16orf59Q7L2K0 433 aa9.73□□□□□ -0.85
USP3-208ENST00000558285 HERC6Q8IVU3 1022 aa9.73□□□□□ -0.85
USP3-208ENST00000558285 METTL13Q8N6R0 699 aa9.73□□□□□ -0.85
USP3-208ENST00000558285 DHX38Q92620 1227 aaKnown RBP9.73□□□□□ -0.85
USP3-208ENST00000558285 FAM49AQ9H0Q0 323 aaPredicted RBP9.73□□□□□ -0.85
USP3-208ENST00000558285 ZNF576Q9H609 170 aa9.73□□□□□ -0.85
USP3-208ENST00000558285 PCDHA12Q9UN75 941 aa9.73□□□□□ -0.85
USP3-208ENST00000558285 INSL6Q9Y581 213 aa9.73□□□□□ -0.85
USP3-208ENST00000558285 GPR182O15218 404 aa9.72□□□□□ -0.85
USP3-208ENST00000558285 GAS2O43903 313 aaKnown RBP9.72□□□□□ -0.85
USP3-208ENST00000558285 PSMD10O75832 226 aa9.72□□□□□ -0.85
USP3-208ENST00000558285 CTDNEP1O95476 244 aa9.72□□□□□ -0.85
USP3-208ENST00000558285 TDP2O95551 362 aa9.72□□□□□ -0.85
USP3-208ENST00000558285 P4HBP07237 508 aaKnown RBP9.72□□□□□ -0.85
USP3-208ENST00000558285 STAG3L1P0CL83 205 aa9.72□□□□□ -0.85
USP3-208ENST00000558285 KLRC1P26715 233 aa9.72□□□□□ -0.85
USP3-208ENST00000558285 QARSP47897 775 aaKnown RBP9.72□□□□□ -0.85
USP3-208ENST00000558285 ADAM17P78536 824 aa9.72□□□□□ -0.85
USP3-208ENST00000558285 ZNF200P98182 395 aaPredicted RBP9.72□□□□□ -0.85
USP3-208ENST00000558285 PAK2Q13177 524 aa9.72□□□□□ -0.85
USP3-208ENST00000558285 PPP2R5CQ13362 524 aa9.72□□□□□ -0.85
USP3-208ENST00000558285 TRIM71Q2Q1W2 868 aaKnown RBP9.72□□□□□ -0.85
USP3-208ENST00000558285 PLEKHG4Q58EX7 1191 aa9.72□□□□□ -0.85
USP3-208ENST00000558285 TSHZ1Q6ZSZ6 1077 aa9.72□□□□□ -0.85
USP3-208ENST00000558285 CCDC60Q8IWA6 550 aaPredicted RBP9.72□□□□□ -0.85
USP3-208ENST00000558285 DNAJB3Q8WWF6 145 aa9.72□□□□□ -0.85
USP3-208ENST00000558285 SLC7A3Q8WY07 619 aa9.72□□□□□ -0.85
USP3-208ENST00000558285 AIFM3Q96NN9 605 aa9.72□□□□□ -0.85
USP3-208ENST00000558285 SAMD11Q96NU1 681 aa9.72□□□□□ -0.85
USP3-208ENST00000558285 RAD9AQ99638 391 aa9.72□□□□□ -0.85
USP3-208ENST00000558285 PBX4Q9BYU1 374 aa9.72□□□□□ -0.85
USP3-208ENST00000558285 INO80BQ9C086 356 aaPredicted RBP9.72□□□□□ -0.85
USP3-208ENST00000558285 SEMA6BQ9H3T3 888 aa9.72□□□□□ -0.85
USP3-208ENST00000558285 BCAS3Q9H6U6 928 aa9.72□□□□□ -0.85
USP3-208ENST00000558285 MTMR10Q9NXD2 777 aa9.72□□□□□ -0.85
USP3-208ENST00000558285 SMC3Q9UQE7 1217 aa9.72□□□□□ -0.85
USP3-208ENST00000558285 RWDD3Q9Y3V2 267 aa9.72□□□□□ -0.85
USP3-208ENST00000558285 IGSF9BQ9UPX0 1349 aa9.72□□□□□ -0.85
USP3-208ENST00000558285 PDIA4P13667 645 aaKnown RBP9.71□□□□□ -0.85
USP3-208ENST00000558285 FOSL2P15408 326 aa9.71□□□□□ -0.85
USP3-208ENST00000558285 WDR5P61964 334 aaKnown RBP9.71□□□□□ -0.85
USP3-208ENST00000558285 PRKCEQ02156 737 aa9.71□□□□□ -0.85
USP3-208ENST00000558285 EPHA7Q15375 998 aa9.71□□□□□ -0.85
USP3-208ENST00000558285 FBXO18Q8NFZ0 1043 aa9.71□□□□□ -0.85
USP3-208ENST00000558285 PPP1R13LQ8WUF5 828 aa9.71□□□□□ -0.85
USP3-208ENST00000558285 LENG9Q96B70 501 aa9.71□□□□□ -0.85
USP3-208ENST00000558285 FAM212AQ96EL1 285 aa9.71□□□□□ -0.85
USP3-208ENST00000558285 TBC1D32Q96NH3 1257 aa9.71□□□□□ -0.85
USP3-208ENST00000558285 CELF4Q9BZC1 486 aaKnown RBP9.71□□□□□ -0.85
USP3-208ENST00000558285 UNC45AQ9H3U1 944 aa9.71□□□□□ -0.85
USP3-208ENST00000558285 ZSWIM4Q9H7M6 989 aa9.71□□□□□ -0.85
USP3-208ENST00000558285 SEPT9Q9UHD8 586 aaPredicted RBP9.71□□□□□ -0.85
USP3-208ENST00000558285 KDM3AQ9Y4C1 1321 aa9.71□□□□□ -0.86
USP3-208ENST00000558285 CARNS1A5YM72 827 aa9.7□□□□□ -0.86
USP3-208ENST00000558285 LAD1O00515 517 aa9.7□□□□□ -0.86
USP3-208ENST00000558285 NBNO60934 754 aa9.7□□□□□ -0.86
USP3-208ENST00000558285 FDPSP14324 419 aaKnown RBP9.7□□□□□ -0.86
USP3-208ENST00000558285 RFC5P40937 340 aa9.7□□□□□ -0.86
USP3-208ENST00000558285 CRYBB1P53674 252 aaPredicted RBP9.7□□□□□ -0.86
USP3-208ENST00000558285 NCBP1Q09161 790 aaKnown RBP9.7□□□□□ -0.86
USP3-208ENST00000558285 HAUS3Q68CZ6 603 aa9.7□□□□□ -0.86
USP3-208ENST00000558285 DBF4BQ8NFT6 615 aa9.7□□□□□ -0.86
USP3-208ENST00000558285 ETNPPLQ8TBG4 499 aa9.7□□□□□ -0.86
USP3-208ENST00000558285 TCP11Q8WWU5 503 aa9.7□□□□□ -0.86
USP3-208ENST00000558285 RSPH1Q8WYR4 309 aa9.7□□□□□ -0.86
USP3-208ENST00000558285 CTAGE1Q96RT6 745 aa9.7□□□□□ -0.86
USP3-208ENST00000558285 YME1L1Q96TA2 773 aa9.7□□□□□ -0.86
USP3-208ENST00000558285 PCYT2Q99447 389 aa9.7□□□□□ -0.86
USP3-208ENST00000558285 KCNMB3Q9NPA1 279 aa9.7□□□□□ -0.86
USP3-208ENST00000558285 C1orf112Q9NSG2 853 aa9.7□□□□□ -0.86
USP3-208ENST00000558285 CXXC1Q9P0U4 656 aaPredicted RBP9.7□□□□□ -0.86
USP3-208ENST00000558285 LRFN2Q9ULH4 789 aa9.7□□□□□ -0.86
USP3-208ENST00000558285 AKT3Q9Y243 479 aa9.7□□□□□ -0.86
USP3-208ENST00000558285 CDY2AQ9Y6F7 541 aa9.7□□□□□ -0.86
USP3-208ENST00000558285 BRCA2P51587 3418 aa9.7□□□□□ -0.86
USP3-208ENST00000558285 TANC1Q9C0D5 1861 aa9.7□□□□□ -0.86
USP3-208ENST00000558285 DDX11L8A8MPP1 907 aa9.7□□□□□ -0.86
USP3-208ENST00000558285 BTBD18B2RXH4 712 aa9.7□□□□□ -0.86
USP3-208ENST00000558285 HOXA2O43364 376 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms