RNA–Protein interactions for RNA: ENST00000557713.5

SCFD1-224, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 556 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-224ENST00000557713 KLHL23Q8NBE8 558 aa18.15■□□□□ 0.5
SCFD1-224ENST00000557713 ERVK-5Q9HDB9 667 aa18.15■□□□□ 0.5
SCFD1-224ENST00000557713 ZNF302Q9NR11 478 aa18.15■□□□□ 0.5
SCFD1-224ENST00000557713 NOC2LQ9Y3T9 749 aaKnown RBP18.15■□□□□ 0.5
SCFD1-224ENST00000557713 COL1A2P08123 1366 aa18.15■□□□□ 0.5
SCFD1-224ENST00000557713 MYO7AQ13402 2215 aa18.14■□□□□ 0.49
SCFD1-224ENST00000557713 BACH1O14867 736 aa18.14■□□□□ 0.49
SCFD1-224ENST00000557713 ADAMTS3O15072 1205 aa18.14■□□□□ 0.49
SCFD1-224ENST00000557713 MGEA5O60502 916 aa18.14■□□□□ 0.49
SCFD1-224ENST00000557713 IRS1P35568 1242 aa18.14■□□□□ 0.49
SCFD1-224ENST00000557713 SARSP49591 514 aaKnown RBP18.14■□□□□ 0.49
SCFD1-224ENST00000557713 NFX1Q12986 1120 aaKnown RBP18.14■□□□□ 0.49
SCFD1-224ENST00000557713 KRT32Q14532 448 aa18.14■□□□□ 0.49
SCFD1-224ENST00000557713 SWSAP1Q6NVH7 229 aa18.14■□□□□ 0.49
SCFD1-224ENST00000557713 TMEM40Q8WWA1 233 aa18.14■□□□□ 0.49
SCFD1-224ENST00000557713 RGS18Q9NS28 235 aa18.14■□□□□ 0.49
SCFD1-224ENST00000557713 LOXHD1Q8IVV2 1947 aa18.13■□□□□ 0.49
SCFD1-224ENST00000557713 IPO5O00410 1097 aaKnown RBP18.13■□□□□ 0.49
SCFD1-224ENST00000557713 RPS6KA5O75582 802 aa18.13■□□□□ 0.49
SCFD1-224ENST00000557713 CSPG5O95196 566 aa18.13■□□□□ 0.49
SCFD1-224ENST00000557713 HMGB1P09429 215 aaKnown RBP18.13■□□□□ 0.49
SCFD1-224ENST00000557713 SMAD4Q13485 552 aaKnown RBP18.13■□□□□ 0.49
SCFD1-224ENST00000557713 MIS18BP1Q6P0N0 1132 aa18.13■□□□□ 0.49
SCFD1-224ENST00000557713 PDXDC2PQ6P474 469 aa18.13■□□□□ 0.49
SCFD1-224ENST00000557713 ADGRD2Q7Z7M1 963 aa18.13■□□□□ 0.49
SCFD1-224ENST00000557713 POF1BQ8WVV4 589 aa18.13■□□□□ 0.49
SCFD1-224ENST00000557713 MSLNLQ96KJ4 702 aa18.13■□□□□ 0.49
SCFD1-224ENST00000557713 ZMYND12Q9H0C1 365 aa18.13■□□□□ 0.49
SCFD1-224ENST00000557713 TBC1D22BQ9NU19 505 aa18.13■□□□□ 0.49
SCFD1-224ENST00000557713 CD207Q9UJ71 328 aa18.13■□□□□ 0.49
SCFD1-224ENST00000557713 LRFN2Q9ULH4 789 aa18.13■□□□□ 0.49
SCFD1-224ENST00000557713 PCDHB7Q9Y5E2 793 aa18.13■□□□□ 0.49
SCFD1-224ENST00000557713 MAFBQ9Y5Q3 323 aaPredicted RBP18.13■□□□□ 0.49
SCFD1-224ENST00000557713 KIAA1671Q9BY89 1806 aa18.13■□□□□ 0.49
SCFD1-224ENST00000557713 ESYT2A0FGR8 921 aa18.12■□□□□ 0.49
SCFD1-224ENST00000557713 MCTP2Q6DN12 878 aa18.12■□□□□ 0.49
SCFD1-224ENST00000557713 EFHBQ8N7U6 833 aa18.12■□□□□ 0.49
SCFD1-224ENST00000557713 KCNB2Q92953 911 aa18.12■□□□□ 0.49
SCFD1-224ENST00000557713 UIMC1Q96RL1 719 aa18.12■□□□□ 0.49
SCFD1-224ENST00000557713 ADAM2Q99965 735 aa18.12■□□□□ 0.49
SCFD1-224ENST00000557713 UPF3BQ9BZI7 483 aaKnown RBP18.12■□□□□ 0.49
SCFD1-224ENST00000557713 CLEC1BQ9P126 229 aa18.12■□□□□ 0.49
SCFD1-224ENST00000557713 ST3GAL5Q9UNP4 418 aa18.12■□□□□ 0.49
SCFD1-224ENST00000557713 GINS2Q9Y248 185 aa18.12■□□□□ 0.49
SCFD1-224ENST00000557713 CCDC196A0A1B0GTZ2 297 aa18.11■□□□□ 0.49
SCFD1-224ENST00000557713 C9IYK1 514 aa18.11■□□□□ 0.49
SCFD1-224ENST00000557713 GPR182O15218 404 aa18.11■□□□□ 0.49
SCFD1-224ENST00000557713 C22orf31O95567 290 aa18.11■□□□□ 0.49
SCFD1-224ENST00000557713 EYA4O95677 639 aa18.11■□□□□ 0.49
SCFD1-224ENST00000557713 CPA1P15085 419 aa18.11■□□□□ 0.49
SCFD1-224ENST00000557713 METAP2P50579 478 aaKnown RBP eCLIP18.11■□□□□ 0.49
SCFD1-224ENST00000557713 APOBRQ0VD83 1088 aa18.11■□□□□ 0.49
SCFD1-224ENST00000557713 PKN1Q16512 942 aa18.11■□□□□ 0.49
SCFD1-224ENST00000557713 CSPP1Q1MSJ5 1256 aa18.11■□□□□ 0.49
SCFD1-224ENST00000557713 ODR4Q5SWX8 454 aa18.11■□□□□ 0.49
SCFD1-224ENST00000557713 ZNF746Q6NUN9 644 aaPredicted RBP18.11■□□□□ 0.49
SCFD1-224ENST00000557713 SLC24A5Q71RS6 500 aa18.11■□□□□ 0.49
SCFD1-224ENST00000557713 BBXQ8WY36 941 aaPredicted RBP18.11■□□□□ 0.49
SCFD1-224ENST00000557713 PPP2R3CQ969Q6 453 aa18.11■□□□□ 0.49
SCFD1-224ENST00000557713 POP1Q99575 1024 aaKnown RBP18.11■□□□□ 0.49
SCFD1-224ENST00000557713 ZNF577Q9BSK1 485 aa18.11■□□□□ 0.49
SCFD1-224ENST00000557713 C6orf50Q9HD87 102 aa18.11■□□□□ 0.49
SCFD1-224ENST00000557713 C1orf112Q9NSG2 853 aa18.11■□□□□ 0.49
SCFD1-224ENST00000557713 DENND3A2RUS2 1198 aa18.1■□□□□ 0.49
SCFD1-224ENST00000557713 PRPF3O43395 683 aaKnown RBP18.1■□□□□ 0.49
SCFD1-224ENST00000557713 GPR32O75388 356 aa18.1■□□□□ 0.49
SCFD1-224ENST00000557713 CDC45O75419 566 aa18.1■□□□□ 0.49
SCFD1-224ENST00000557713 NRIP1P48552 1158 aa18.1■□□□□ 0.49
SCFD1-224ENST00000557713 NDUFV1P49821 464 aa18.1■□□□□ 0.49
SCFD1-224ENST00000557713 CRYBB1P53674 252 aaPredicted RBP18.1■□□□□ 0.49
SCFD1-224ENST00000557713 FAM189BP81408 668 aa18.1■□□□□ 0.49
SCFD1-224ENST00000557713 FAM102BQ5T8I3 360 aa18.1■□□□□ 0.49
SCFD1-224ENST00000557713 CENPQQ7L2Z9 268 aaPredicted RBP18.1■□□□□ 0.49
SCFD1-224ENST00000557713 RNF216Q9NWF9 866 aaPredicted RBP18.1■□□□□ 0.49
SCFD1-224ENST00000557713 NAP1L2Q9ULW6 460 aaPredicted RBP18.1■□□□□ 0.49
SCFD1-224ENST00000557713 PPFIA3O75145 1194 aa18.09■□□□□ 0.49
SCFD1-224ENST00000557713 IBSPP21815 317 aaPredicted RBP18.09■□□□□ 0.49
SCFD1-224ENST00000557713 CIITAP33076 1130 aa18.09■□□□□ 0.49
SCFD1-224ENST00000557713 SETQ01105 290 aaPredicted RBP18.09■□□□□ 0.49
SCFD1-224ENST00000557713 UBE3AQ05086 875 aa18.09■□□□□ 0.49
SCFD1-224ENST00000557713 COASYQ13057 564 aa18.09■□□□□ 0.49
SCFD1-224ENST00000557713 DSC3Q14574 896 aa18.09■□□□□ 0.49
SCFD1-224ENST00000557713 KIZQ2M2Z5 673 aa18.09■□□□□ 0.49
SCFD1-224ENST00000557713 HERC4Q5GLZ8 1057 aaPredicted RBP18.09■□□□□ 0.49
SCFD1-224ENST00000557713 Q6ZUG5 572 aa18.09■□□□□ 0.49
SCFD1-224ENST00000557713 RBM23Q86U06 439 aaKnown RBP18.09■□□□□ 0.49
SCFD1-224ENST00000557713 FAM228AQ86W67 206 aa18.09■□□□□ 0.49
SCFD1-224ENST00000557713 RNF135Q8IUD6 432 aa18.09■□□□□ 0.49
SCFD1-224ENST00000557713 SMAP1Q8IYB5 467 aaPredicted RBP18.09■□□□□ 0.49
SCFD1-224ENST00000557713 REXO1Q8N1G1 1221 aaKnown RBP18.09■□□□□ 0.49
SCFD1-224ENST00000557713 CCDC12Q8WUD4 166 aaPredicted RBP18.09■□□□□ 0.49
SCFD1-224ENST00000557713 PCDHB12Q9Y5F1 795 aa18.09■□□□□ 0.49
SCFD1-224ENST00000557713 PCDHGC5Q9Y5F6 944 aa18.09■□□□□ 0.49
SCFD1-224ENST00000557713 PCDHA10Q9Y5I2 948 aa18.09■□□□□ 0.49
SCFD1-224ENST00000557713 C5orf42Q9H799 3197 aa18.09■□□□□ 0.49
SCFD1-224ENST00000557713 NID2Q14112 1375 aa18.08■□□□□ 0.49
SCFD1-224ENST00000557713 TBKBP1A7MCY6 615 aa18.08■□□□□ 0.48
SCFD1-224ENST00000557713 GLP2RO95838 553 aa18.08■□□□□ 0.48
SCFD1-224ENST00000557713 VTNP04004 478 aa18.08■□□□□ 0.48
SCFD1-224ENST00000557713 PSAPP07602 524 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms