RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 SAAL1Q96ER3 474 aa5.38□□□□□ -1.55
SYNE2-223ENST00000557005 PITPNM3Q9BZ71 974 aa5.38□□□□□ -1.55
SYNE2-223ENST00000557005 DDX20Q9UHI6 824 aaKnown RBP5.38□□□□□ -1.55
SYNE2-223ENST00000557005 L1RE1Q9UN81 338 aa5.38□□□□□ -1.55
SYNE2-223ENST00000557005 DIS3Q9Y2L1 958 aaKnown RBP5.38□□□□□ -1.55
SYNE2-223ENST00000557005 ZNF804BA4D1E1 1349 aa5.38□□□□□ -1.55
SYNE2-223ENST00000557005 XDHP47989 1333 aa5.38□□□□□ -1.55
SYNE2-223ENST00000557005 EXOC1LA0A1B0GW35 172 aa5.38□□□□□ -1.55
SYNE2-223ENST00000557005 POTEB3A0JP26 581 aa5.38□□□□□ -1.55
SYNE2-223ENST00000557005 POTECB2RU33 542 aa5.38□□□□□ -1.55
SYNE2-223ENST00000557005 IFNB1P01574 187 aa5.38□□□□□ -1.55
SYNE2-223ENST00000557005 CDC25CP30307 473 aa5.38□□□□□ -1.55
SYNE2-223ENST00000557005 TPD52P55327 224 aaPredicted RBP5.38□□□□□ -1.55
SYNE2-223ENST00000557005 BFSP1Q12934 665 aa5.38□□□□□ -1.55
SYNE2-223ENST00000557005 KRT81Q14533 505 aa5.38□□□□□ -1.55
SYNE2-223ENST00000557005 PPP2R5DQ14738 602 aa5.38□□□□□ -1.55
SYNE2-223ENST00000557005 GNPTABQ3T906 1256 aa5.38□□□□□ -1.55
SYNE2-223ENST00000557005 AGBL2Q5U5Z8 902 aa5.38□□□□□ -1.55
SYNE2-223ENST00000557005 RASIP1Q5U651 963 aa5.38□□□□□ -1.55
SYNE2-223ENST00000557005 NAIF1Q69YI7 327 aaPredicted RBP5.38□□□□□ -1.55
SYNE2-223ENST00000557005 POTEBQ6S5H4 581 aa5.38□□□□□ -1.55
SYNE2-223ENST00000557005 RGS9BPQ6ZS82 235 aa5.38□□□□□ -1.55
SYNE2-223ENST00000557005 ELOA2Q8IYF1 753 aaPredicted RBP5.38□□□□□ -1.55
SYNE2-223ENST00000557005 TSEN2Q8NCE0 465 aaKnown RBP5.38□□□□□ -1.55
SYNE2-223ENST00000557005 EPS8L3Q8TE67 593 aaKnown RBP5.38□□□□□ -1.55
SYNE2-223ENST00000557005 XPO6Q96QU8 1125 aaKnown RBP5.38□□□□□ -1.55
SYNE2-223ENST00000557005 BRIP1Q9BX63 1249 aa5.38□□□□□ -1.55
SYNE2-223ENST00000557005 ADAM33Q9BZ11 813 aa5.38□□□□□ -1.55
SYNE2-223ENST00000557005 ANGPTL2Q9UKU9 493 aa5.38□□□□□ -1.55
SYNE2-223ENST00000557005 RTCBQ9Y3I0 505 aaKnown RBP5.38□□□□□ -1.55
SYNE2-223ENST00000557005 PCDHB4Q9Y5E5 795 aa5.38□□□□□ -1.55
SYNE2-223ENST00000557005 CAPN6Q9Y6Q1 641 aa5.38□□□□□ -1.55
SYNE2-223ENST00000557005 TOM1O60784 492 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 TNNI1P19237 187 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 CDK8P49336 464 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 ERFP50548 548 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 DIXDC1Q155Q3 683 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 ZNF746Q6NUN9 644 aaPredicted RBP5.37□□□□□ -1.55
SYNE2-223ENST00000557005 ALKBH5Q6P6C2 394 aaKnown RBP5.37□□□□□ -1.55
SYNE2-223ENST00000557005 TMEM154Q6P9G4 183 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 CADPS2Q86UW7 1296 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 CNBD1Q8NA66 436 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 SLC44A5Q8NCS7 719 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 GSDMBQ8TAX9 411 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 FGD4Q96M96 766 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 TEKT3Q9BXF9 490 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 TRIM6Q9C030 488 aaPredicted RBP5.37□□□□□ -1.55
SYNE2-223ENST00000557005 ALG13Q9NP73 1137 aaKnown RBP5.37□□□□□ -1.55
SYNE2-223ENST00000557005 KLHL11Q9NVR0 708 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 EVI5O60447 810 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 PFDN1O60925 122 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 KRT19P08727 400 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 PCP11498 1178 aaKnown RBP5.37□□□□□ -1.55
SYNE2-223ENST00000557005 ZNF18P17022 549 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 KCNQ4P56696 695 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 YWHAGP61981 247 aaKnown RBP eCLIP5.37□□□□□ -1.55
SYNE2-223ENST00000557005 COG7P83436 770 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 KRT17Q04695 432 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 KIF22Q14807 665 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 PSMD6Q15008 389 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 EARS2Q5JPH6 523 aaKnown RBP5.37□□□□□ -1.55
SYNE2-223ENST00000557005 PAPD7Q5XG87 772 aaKnown RBP5.37□□□□□ -1.55
SYNE2-223ENST00000557005 SPATA21Q7Z572 469 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 USP38Q8NB14 1042 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 PIGOQ8TEQ8 1089 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 PIGBQ92521 554 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 CCDC127Q96BQ5 260 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 SH3GL3Q99963 347 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 FAM118BQ9BPY3 351 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 BARHL2Q9NY43 387 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 TMOD4Q9NZQ9 345 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 FRMD4AQ9P2Q2 1039 aaPredicted RBP5.37□□□□□ -1.55
SYNE2-223ENST00000557005 PPP1R9AQ9ULJ8 1098 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 ZNF148Q9UQR1 794 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 AGLP35573 1532 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 CNTNAP5Q8WYK1 1306 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 CEMIPQ8WUJ3 1361 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 NR3C1P04150 777 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 DOK7Q18PE1 504 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 BSPRYQ5W0U4 402 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 PHLDB3Q6NSJ2 640 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 FAM178BQ8IXR5 827 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 LRRC34Q8IZ02 419 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 PDCD7Q8N8D1 485 aaKnown RBP5.37□□□□□ -1.55
SYNE2-223ENST00000557005 ZKSCAN4Q969J2 545 aaPredicted RBP5.37□□□□□ -1.55
SYNE2-223ENST00000557005 SNF8Q96H20 258 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 TMEM60Q9H2L4 133 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 METTL14Q9HCE5 456 aaKnown RBP5.37□□□□□ -1.55
SYNE2-223ENST00000557005 TXNDC16Q9P2K2 825 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 CHORDC1Q9UHD1 332 aaPredicted RBP5.37□□□□□ -1.55
SYNE2-223ENST00000557005 RAB21Q9UL25 225 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 MAGED2Q9UNF1 606 aaPredicted RBP5.37□□□□□ -1.55
SYNE2-223ENST00000557005 POTEFA5A3E0 1075 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 CFAP73A6NFT4 308 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 ATMINO43313 823 aaPredicted RBP5.37□□□□□ -1.55
SYNE2-223ENST00000557005 POTEIP0CG38 1075 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 MYBP10242 640 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 FKBP3Q00688 224 aaKnown RBP5.37□□□□□ -1.55
SYNE2-223ENST00000557005 TRPC3Q13507 836 aa5.37□□□□□ -1.55
SYNE2-223ENST00000557005 KCNB1Q14721 858 aa5.37□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms