RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 ASCC2Q9H1I8 757 aaPredicted RBP14.93□□□□□ -0.02
SHMT2-226ENST00000556825 DHX36Q9H2U1 1008 aaKnown RBP14.93□□□□□ -0.02
SHMT2-226ENST00000556825 ATAD3AQ9NVI7 634 aa14.93□□□□□ -0.02
SHMT2-226ENST00000556825 FBXL5Q9UKA1 691 aa14.93□□□□□ -0.02
SHMT2-226ENST00000556825 DLG5Q8TDM6 1919 aa14.93□□□□□ -0.02
SHMT2-226ENST00000556825 SH2B2O14492 632 aaPredicted RBP14.93□□□□□ -0.02
SHMT2-226ENST00000556825 PDE5AO76074 875 aa14.93□□□□□ -0.02
SHMT2-226ENST00000556825 HOXD10P28358 340 aa14.93□□□□□ -0.02
SHMT2-226ENST00000556825 PDIA3P30101 505 aaKnown RBP14.93□□□□□ -0.02
SHMT2-226ENST00000556825 PTK7Q13308 1070 aa14.93□□□□□ -0.02
SHMT2-226ENST00000556825 TTF1Q15361 905 aaPredicted RBP14.93□□□□□ -0.02
SHMT2-226ENST00000556825 LRRC8BQ6P9F7 803 aa14.93□□□□□ -0.02
SHMT2-226ENST00000556825 CLASRPQ8N2M8 674 aaKnown RBP14.93□□□□□ -0.02
SHMT2-226ENST00000556825 GAB3Q8WWW8 586 aa14.93□□□□□ -0.02
SHMT2-226ENST00000556825 SELENOSQ9BQE4 189 aa14.93□□□□□ -0.02
SHMT2-226ENST00000556825 IRF2BPLQ9H1B7 796 aa14.93□□□□□ -0.02
SHMT2-226ENST00000556825 ADAM7Q9H2U9 754 aa14.93□□□□□ -0.02
SHMT2-226ENST00000556825 TPK1Q9H3S4 243 aa14.93□□□□□ -0.02
SHMT2-226ENST00000556825 TDRKHQ9Y2W6 561 aaKnown RBP14.93□□□□□ -0.02
SHMT2-226ENST00000556825 PASKQ96RG2 1323 aa14.93□□□□□ -0.02
SHMT2-226ENST00000556825 STRNO43815 780 aa14.92□□□□□ -0.02
SHMT2-226ENST00000556825 LCA5LO95447 670 aa14.92□□□□□ -0.02
SHMT2-226ENST00000556825 EIF3BP55884 814 aaKnown RBP14.92□□□□□ -0.02
SHMT2-226ENST00000556825 TBL3Q12788 808 aaKnown RBP14.92□□□□□ -0.02
SHMT2-226ENST00000556825 TTC39AQ5SRH9 613 aa14.92□□□□□ -0.02
SHMT2-226ENST00000556825 ST13P4Q8IZP2 240 aaPredicted RBP14.92□□□□□ -0.02
SHMT2-226ENST00000556825 PSMB7Q99436 277 aa14.92□□□□□ -0.02
SHMT2-226ENST00000556825 KRT12Q99456 494 aa14.92□□□□□ -0.02
SHMT2-226ENST00000556825 VPS16Q9H269 839 aa14.92□□□□□ -0.02
SHMT2-226ENST00000556825 EPB41L1Q9H4G0 881 aa14.92□□□□□ -0.02
SHMT2-226ENST00000556825 GPHNQ9NQX3 736 aaPredicted RBP14.92□□□□□ -0.02
SHMT2-226ENST00000556825 PAG1Q9NWQ8 432 aa14.92□□□□□ -0.02
SHMT2-226ENST00000556825 CAPN11Q9UMQ6 739 aa14.92□□□□□ -0.02
SHMT2-226ENST00000556825 SOCS7O14512 581 aa14.92□□□□□ -0.02
SHMT2-226ENST00000556825 OXSR1O95747 527 aaPredicted RBP14.92□□□□□ -0.02
SHMT2-226ENST00000556825 SPAG1Q07617 926 aa14.92□□□□□ -0.02
SHMT2-226ENST00000556825 AP1B1Q10567 949 aa14.92□□□□□ -0.02
SHMT2-226ENST00000556825 KLHL35Q6PF15 583 aa14.92□□□□□ -0.02
SHMT2-226ENST00000556825 Q6ZNX1 250 aa14.92□□□□□ -0.02
SHMT2-226ENST00000556825 TRIM67Q6ZTA4 783 aa14.92□□□□□ -0.02
SHMT2-226ENST00000556825 ZNF589Q86UQ0 364 aaPredicted RBP14.92□□□□□ -0.02
SHMT2-226ENST00000556825 ANKRD13BQ86YJ7 626 aa14.92□□□□□ -0.02
SHMT2-226ENST00000556825 CACTIN-AS1Q8N1I8 211 aa14.92□□□□□ -0.02
SHMT2-226ENST00000556825 PPFIBP2Q8ND30 876 aa14.92□□□□□ -0.02
SHMT2-226ENST00000556825 NRG4Q8WWG1 115 aa14.92□□□□□ -0.02
SHMT2-226ENST00000556825 INPP5DQ92835 1189 aa14.92□□□□□ -0.02
SHMT2-226ENST00000556825 NMD3Q96D46 503 aaKnown RBP14.92□□□□□ -0.02
SHMT2-226ENST00000556825 COG3Q96JB2 828 aa14.92□□□□□ -0.02
SHMT2-226ENST00000556825 SH2D4AQ9H788 454 aa14.92□□□□□ -0.02
SHMT2-226ENST00000556825 NHEJ1Q9H9Q4 299 aaPredicted RBP14.92□□□□□ -0.02
SHMT2-226ENST00000556825 PRKAG3Q9UGI9 489 aa14.92□□□□□ -0.02
SHMT2-226ENST00000556825 ADAMTSL3P82987 1691 aa14.91□□□□□ -0.02
SHMT2-226ENST00000556825 PLEKHG3A1L390 1219 aa14.91□□□□□ -0.02
SHMT2-226ENST00000556825 TESPA1A2RU30 521 aaPredicted RBP14.91□□□□□ -0.02
SHMT2-226ENST00000556825 MATN2O00339 956 aa14.91□□□□□ -0.02
SHMT2-226ENST00000556825 ZFYP08048 801 aaPredicted RBP14.91□□□□□ -0.02
SHMT2-226ENST00000556825 CD44P16070 742 aaKnown RBP14.91□□□□□ -0.02
SHMT2-226ENST00000556825 RELAQ04206 551 aa14.91□□□□□ -0.02
SHMT2-226ENST00000556825 FXNQ16595 210 aa14.91□□□□□ -0.02
SHMT2-226ENST00000556825 WDR72Q3MJ13 1102 aa14.91□□□□□ -0.02
SHMT2-226ENST00000556825 ZCWPW2Q504Y3 356 aa14.91□□□□□ -0.02
SHMT2-226ENST00000556825 ARHGAP27Q6ZUM4 889 aa14.91□□□□□ -0.02
SHMT2-226ENST00000556825 FAM133AQ8N9E0 248 aa14.91□□□□□ -0.02
SHMT2-226ENST00000556825 DNAJC1Q96KC8 554 aaKnown RBP14.91□□□□□ -0.02
SHMT2-226ENST00000556825 GBA3Q9H227 469 aa14.91□□□□□ -0.02
SHMT2-226ENST00000556825 SERTAD1Q9UHV2 236 aa14.91□□□□□ -0.02
SHMT2-226ENST00000556825 GRID2IPA4D2P6 1211 aa14.9□□□□□ -0.02
SHMT2-226ENST00000556825 STK10O94804 968 aaKnown RBP14.9□□□□□ -0.02
SHMT2-226ENST00000556825 MOCS3O95396 460 aa14.9□□□□□ -0.02
SHMT2-226ENST00000556825 DEPDC1Q5TB30 811 aa14.9□□□□□ -0.02
SHMT2-226ENST00000556825 B3GNT6Q6ZMB0 384 aa14.9□□□□□ -0.02
SHMT2-226ENST00000556825 LRRC74BQ6ZQY2 392 aa14.9□□□□□ -0.02
SHMT2-226ENST00000556825 BPHLQ86WA6 291 aaPredicted RBP14.9□□□□□ -0.02
SHMT2-226ENST00000556825 ZBED8Q8IZ13 594 aa14.9□□□□□ -0.02
SHMT2-226ENST00000556825 PPIL4Q8WUA2 492 aaKnown RBP eCLIP14.9□□□□□ -0.02
SHMT2-226ENST00000556825 MS4A14Q96JA4 679 aa14.9□□□□□ -0.02
SHMT2-226ENST00000556825 MAP3K14Q99558 947 aa14.9□□□□□ -0.02
SHMT2-226ENST00000556825 SLC39A3Q9BRY0 314 aa14.9□□□□□ -0.02
SHMT2-226ENST00000556825 DENND2DQ9H6A0 471 aaPredicted RBP14.9□□□□□ -0.02
SHMT2-226ENST00000556825 LRWD1Q9UFC0 647 aa14.9□□□□□ -0.02
SHMT2-226ENST00000556825 CCPG1Q9ULG6 757 aa14.9□□□□□ -0.02
SHMT2-226ENST00000556825 TOPAZ1Q8N9V7 1692 aa14.9□□□□□ -0.02
SHMT2-226ENST00000556825 E9PBE3 544 aa14.9□□□□□ -0.02
SHMT2-226ENST00000556825 RAD51CO43502 376 aa14.9□□□□□ -0.02
SHMT2-226ENST00000556825 CBFA2T3O75081 653 aa14.9□□□□□ -0.02
SHMT2-226ENST00000556825 ENTPD5O75356 428 aa14.9□□□□□ -0.02
SHMT2-226ENST00000556825 COL6A2P12110 1019 aa14.9□□□□□ -0.02
SHMT2-226ENST00000556825 ERVK-9P63128 1117 aa14.9□□□□□ -0.02
SHMT2-226ENST00000556825 EXOSC10Q01780 885 aaKnown RBP14.9□□□□□ -0.02
SHMT2-226ENST00000556825 GIT2Q14161 759 aa14.9□□□□□ -0.02
SHMT2-226ENST00000556825 BBS5Q8N3I7 341 aa14.9□□□□□ -0.02
SHMT2-226ENST00000556825 TMCO5AQ8N6Q1 288 aa14.9□□□□□ -0.02
SHMT2-226ENST00000556825 DGCR14Q96DF8 476 aaKnown RBP14.9□□□□□ -0.02
SHMT2-226ENST00000556825 ITPKCQ96DU7 683 aa14.9□□□□□ -0.02
SHMT2-226ENST00000556825 ACEP12821 1306 aa14.89□□□□□ -0.03
SHMT2-226ENST00000556825 IQCA1LA6NCM1 817 aa14.89□□□□□ -0.03
SHMT2-226ENST00000556825 MAP3K7O43318 606 aa14.89□□□□□ -0.03
SHMT2-226ENST00000556825 CYP21A2P08686 494 aa14.89□□□□□ -0.03
SHMT2-226ENST00000556825 KCNA2P16389 499 aa14.89□□□□□ -0.03
SHMT2-226ENST00000556825 UBXN1Q04323 297 aa14.89□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms